Wall clock time and date at job start Tue Mar 31 2020 20:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99583 * 2 1 4 4 H 1.48502 * 109.47318 * 270.00041 * 3 2 1 5 5 H 1.48500 * 109.47150 * 30.00142 * 3 2 1 6 6 H 1.48498 * 109.47209 * 150.00122 * 3 2 1 7 7 C 1.37871 * 120.00396 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00055 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00283 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47061 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46824 * 180.02562 * 10 9 7 12 12 N 1.46503 * 109.47025 * 179.97438 * 11 10 9 13 13 C 1.34775 * 119.99937 * 179.97438 * 12 11 10 14 14 O 1.21366 * 119.99787 * 0.02562 * 13 12 11 15 15 C 1.49352 * 120.00377 * 180.02562 * 13 12 11 16 16 O 1.21381 * 119.99409 * 0.02562 * 15 13 12 17 17 N 1.34775 * 120.00377 * 179.97438 * 15 13 12 18 18 C 1.39717 * 119.99489 * 185.27638 * 17 15 13 19 19 C 1.38995 * 120.04444 * 213.34341 * 18 17 15 20 20 C 1.38098 * 120.03307 * 180.02562 * 19 18 17 21 21 C 1.38222 * 120.13402 * 359.68003 * 20 19 18 22 22 C 1.38779 * 120.08988 * 0.59860 * 21 20 19 23 23 O 1.35902 * 120.01221 * 179.69768 * 22 21 20 24 24 C 1.42898 * 117.00463 * 359.72824 * 23 22 21 25 25 C 1.53000 * 109.47365 * 180.02562 * 24 23 22 26 26 F 1.39897 * 109.47211 * 64.99799 * 25 24 23 27 27 C 1.38605 * 119.96616 * 359.42376 * 22 21 20 28 28 H 0.96997 * 120.00281 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.46690 * 60.00463 * 9 7 2 30 30 H 1.09002 * 109.47268 * 300.00809 * 9 7 2 31 31 H 1.08997 * 109.47245 * 60.00491 * 10 9 7 32 32 H 1.09002 * 109.47261 * 299.99860 * 10 9 7 33 33 H 1.09007 * 109.47108 * 59.99977 * 11 10 9 34 34 H 1.08992 * 109.47238 * 300.00310 * 11 10 9 35 35 H 0.96996 * 120.00007 * 0.02562 * 12 11 10 36 36 H 0.96995 * 119.99538 * 5.27826 * 17 15 13 37 37 H 1.08000 * 119.98042 * 0.03125 * 19 18 17 38 38 H 1.08011 * 119.93379 * 179.97438 * 20 19 18 39 39 H 1.07997 * 119.95549 * 180.30011 * 21 20 19 40 40 H 1.08999 * 109.46910 * 300.00129 * 24 23 22 41 41 H 1.08995 * 109.47263 * 60.00029 * 24 23 22 42 42 H 1.08999 * 109.47166 * 185.00228 * 25 24 23 43 43 H 1.09004 * 109.46732 * 304.99949 * 25 24 23 44 44 H 1.08007 * 120.06154 * 180.25009 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0216 -2.6364 0.0001 11 6 5.5517 -2.6363 0.0001 12 7 6.0401 -4.0175 0.0009 13 6 7.3652 -4.2637 0.0005 14 8 8.1538 -3.3412 0.0001 15 6 7.8632 -5.6717 0.0007 16 8 7.0744 -6.5943 0.0007 17 7 9.1883 -5.9179 -0.0002 18 6 9.6548 -7.2302 -0.1113 19 6 10.8238 -7.6105 0.5373 20 6 11.2850 -8.9075 0.4269 21 6 10.5827 -9.8322 -0.3228 22 6 9.4179 -9.4569 -0.9774 23 8 8.7319 -10.3659 -1.7191 24 6 9.2704 -11.6878 -1.7859 25 6 8.3687 -12.5623 -2.6595 26 9 8.3907 -12.0868 -3.9750 27 6 8.9517 -8.1561 -0.8696 28 1 -0.4850 0.8400 0.0004 29 1 3.8752 -0.6796 0.8895 30 1 3.8747 -0.6805 -0.8905 31 1 3.6581 -3.1504 -0.8897 32 1 3.6587 -3.1500 0.8903 33 1 5.9150 -2.1223 0.8901 34 1 5.9150 -2.1225 -0.8898 35 1 5.4098 -4.7548 0.0009 36 1 9.8179 -5.1841 0.0764 37 1 11.3717 -6.8912 1.1280 38 1 12.1939 -9.2011 0.9313 39 1 10.9434 -10.8470 -0.4032 40 1 10.2702 -11.6514 -2.2186 41 1 9.3241 -12.1095 -0.7823 42 1 8.7295 -13.5907 -2.6388 43 1 7.3484 -12.5274 -2.2775 44 1 8.0432 -7.8634 -1.3751 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177205368.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:54 Heat of formation + Delta-G solvation = -162.033907 kcal Electronic energy + Delta-G solvation = -27331.151237 eV Core-core repulsion = 22969.180739 eV Total energy + Delta-G solvation = -4361.970497 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.61746 -42.26117 -41.06995 -39.98534 -38.51267 -37.25556 -35.87370 -35.11160 -33.32853 -32.46832 -30.98750 -30.29132 -29.32584 -26.56800 -24.87048 -24.23487 -23.69038 -22.43145 -22.25758 -21.29611 -20.11257 -19.37079 -18.83590 -18.06484 -17.64604 -17.55825 -17.18181 -17.05420 -16.96113 -16.58270 -16.27085 -16.20810 -16.11141 -15.94353 -15.47342 -15.14111 -14.95848 -14.78148 -14.52214 -14.22092 -13.82936 -13.77195 -13.63003 -13.11207 -12.84274 -12.76135 -12.71592 -12.49496 -12.33393 -12.14567 -11.92273 -11.79590 -11.72666 -11.61438 -11.40131 -11.34103 -10.82065 -10.75707 -10.34985 -9.56574 -9.15220 -8.28570 -6.33215 -0.18452 0.39296 0.49753 1.09752 1.38552 1.40023 1.51834 1.94369 2.04708 2.37352 2.51484 2.73477 3.07115 3.24296 3.54046 3.81203 3.88549 3.99267 4.01681 4.07865 4.15893 4.16187 4.22073 4.27818 4.44054 4.46351 4.47953 4.62371 4.78139 4.84560 4.85257 5.00570 5.10070 5.14232 5.15427 5.24855 5.41219 5.45430 5.54740 5.64033 5.68104 5.82293 6.19720 6.27617 6.36488 6.55620 6.74815 6.76467 7.31511 8.87978 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016221 B = 0.001757 C = 0.001614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.698492 B =15932.675484 C =17344.229049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.001 3.999 3 Si 0.951 3.049 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.243 1.243 7 C -0.533 4.533 8 H 0.034 0.966 9 C -0.011 4.011 10 C -0.106 4.106 11 C 0.124 3.876 12 N -0.686 5.686 13 C 0.510 3.490 14 O -0.538 6.538 15 C 0.512 3.488 16 O -0.516 6.516 17 N -0.633 5.633 18 C 0.165 3.835 19 C -0.173 4.173 20 C -0.053 4.053 21 C -0.216 4.216 22 C 0.134 3.866 23 O -0.337 6.337 24 C 0.016 3.984 25 C 0.057 3.943 26 F -0.237 7.237 27 C -0.184 4.184 28 H 0.266 0.734 29 H 0.027 0.973 30 H 0.024 0.976 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.419 0.581 36 H 0.435 0.565 37 H 0.156 0.844 38 H 0.169 0.831 39 H 0.159 0.841 40 H 0.086 0.914 41 H 0.109 0.891 42 H 0.138 0.862 43 H 0.088 0.912 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.004 -25.913 0.440 39.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.195 4.195 3 Si 0.774 3.226 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.166 1.166 7 C -0.571 4.571 8 H 0.052 0.948 9 C -0.049 4.049 10 C -0.144 4.144 11 C 0.001 3.999 12 N -0.338 5.338 13 C 0.290 3.710 14 O -0.416 6.416 15 C 0.294 3.706 16 O -0.391 6.391 17 N -0.281 5.281 18 C 0.071 3.929 19 C -0.193 4.193 20 C -0.071 4.071 21 C -0.235 4.235 22 C 0.088 3.912 23 O -0.252 6.252 24 C -0.059 4.059 25 C 0.003 3.997 26 F -0.219 7.219 27 C -0.205 4.205 28 H 0.075 0.925 29 H 0.045 0.955 30 H 0.043 0.957 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.256 0.744 36 H 0.275 0.725 37 H 0.174 0.826 38 H 0.187 0.813 39 H 0.177 0.823 40 H 0.104 0.896 41 H 0.127 0.873 42 H 0.155 0.845 43 H 0.106 0.894 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 29.620 -25.708 0.285 39.222 hybrid contribution -0.660 0.864 -0.191 1.104 sum 28.960 -24.844 0.094 38.156 Atomic orbital electron populations 1.70071 1.08364 1.28160 1.52660 1.26046 0.95638 1.03668 0.94167 0.85643 0.79616 0.78109 0.79198 1.19252 1.21205 1.16582 1.21481 0.92093 0.93178 1.50381 0.94801 1.19462 0.93908 0.94257 0.97256 1.21532 0.92013 0.98541 1.02268 1.21601 0.94547 0.80741 1.02997 1.45891 1.06244 1.10890 1.70739 1.19866 0.83788 0.88775 0.78591 1.90769 1.55520 1.45744 1.49593 1.20267 0.83504 0.89507 0.77294 1.90817 1.55695 1.45880 1.46674 1.43052 1.06794 1.08469 1.69750 1.17541 0.95425 0.83491 0.96432 1.21191 0.96876 0.98744 1.02458 1.21194 0.99414 0.91118 0.95403 1.21600 0.95984 1.02801 1.03144 1.18826 0.91818 0.88692 0.91886 1.86095 1.50970 1.21351 1.66761 1.23831 0.98937 0.80213 1.02876 1.22433 1.02722 0.98671 0.75863 1.92760 1.98054 1.90869 1.40209 1.20265 1.03300 0.92493 1.04400 0.92539 0.95501 0.95734 0.91899 0.91782 0.90529 0.90651 0.74399 0.72469 0.82621 0.81325 0.82348 0.89563 0.87329 0.84476 0.89413 0.86759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.81 13.96 21.45 0.30 -59.51 16 2 C 0.00 0.08 5.47 84.65 0.46 0.55 16 3 Si 0.95 43.88 27.47 68.60 1.88 45.77 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 5 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.24 -10.24 6.54 99.48 0.65 -9.59 16 7 C -0.53 -30.33 9.66 25.60 0.25 -30.08 16 8 H 0.03 2.11 7.99 -2.91 -0.02 2.09 16 9 C -0.01 -0.48 4.04 29.85 0.12 -0.36 16 10 C -0.11 -3.78 5.27 30.59 0.16 -3.62 16 11 C 0.12 3.69 5.67 86.38 0.49 4.18 16 12 N -0.69 -18.49 5.55 -464.49 -2.58 -21.06 16 13 C 0.51 13.71 7.89 87.24 0.69 14.40 16 14 O -0.54 -16.07 16.48 -3.30 -0.05 -16.13 16 15 C 0.51 12.89 7.62 87.24 0.66 13.55 16 16 O -0.52 -15.32 14.16 -3.34 -0.05 -15.37 16 17 N -0.63 -12.57 5.32 -304.88 -1.62 -14.20 16 18 C 0.17 3.26 6.27 38.20 0.24 3.50 16 19 C -0.17 -2.23 9.96 22.42 0.22 -2.01 16 20 C -0.05 -0.52 10.03 22.23 0.22 -0.29 16 21 C -0.22 -2.62 9.04 22.40 0.20 -2.42 16 22 C 0.13 2.63 6.68 22.49 0.15 2.78 16 23 O -0.34 -6.74 10.13 -92.44 -0.94 -7.67 16 24 C 0.02 0.15 5.20 71.98 0.37 0.52 16 25 C 0.06 0.48 7.92 71.98 0.57 1.05 16 26 F -0.24 -4.30 17.35 44.97 0.78 -3.52 16 27 C -0.18 -4.40 8.59 22.49 0.19 -4.20 16 28 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 29 H 0.03 1.17 7.20 -2.39 -0.02 1.15 16 30 H 0.02 1.05 7.57 -2.39 -0.02 1.04 16 31 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.06 2.28 8.14 -2.39 -0.02 2.27 16 33 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 34 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.42 10.55 7.94 -92.71 -0.74 9.82 16 36 H 0.43 6.69 8.30 -92.71 -0.77 5.92 16 37 H 0.16 1.19 8.06 -2.91 -0.02 1.16 16 38 H 0.17 0.41 8.06 -2.90 -0.02 0.39 16 39 H 0.16 0.87 6.29 -2.91 -0.02 0.85 16 40 H 0.09 0.59 7.67 -2.39 -0.02 0.57 16 41 H 0.11 0.39 7.65 -2.39 -0.02 0.37 16 42 H 0.14 0.03 8.14 -2.39 -0.02 0.01 16 43 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 44 H 0.11 3.34 6.41 -2.91 -0.02 3.32 16 Total: -1.00 -78.33 380.78 2.23 -76.10 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -0.51 Total: 18.05 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: 5.01 Total: -2.45 kcal Atomic # 7 Polarization: -90.87 SS G_CDS: -3.90 Total: -94.77 kcal Atomic # 8 Polarization: -38.13 SS G_CDS: -1.04 Total: -39.17 kcal Atomic # 9 Polarization: -4.30 SS G_CDS: 0.78 Total: -3.52 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.88 Total: 45.77 kcal Total: -78.33 2.23 -76.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177205368.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.930 kcal (2) G-P(sol) polarization free energy of solvation -78.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds