Wall clock time and date at job start Tue Mar 31 2020 21:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.45103 * 2 1 4 4 C 1.53044 * 109.46032 * 240.03204 * 2 1 3 5 5 C 1.53195 * 109.31023 * 178.61390 * 4 2 1 6 6 N 1.46928 * 108.77643 * 54.63869 * 5 4 2 7 7 C 1.34777 * 120.63269 * 126.36747 * 6 5 4 8 8 O 1.21585 * 119.99768 * 354.92142 * 7 6 5 9 9 N 1.34773 * 119.99841 * 174.91752 * 7 6 5 10 10 C 1.40135 * 119.99815 * 184.51440 * 9 7 6 11 11 C 1.38688 * 120.07932 * 17.86857 * 10 9 7 12 12 C 1.38195 * 120.02434 * 180.25425 * 11 10 9 13 13 C 1.38541 * 120.17349 * 359.45049 * 12 11 10 14 14 F 1.35102 * 119.92243 * 180.27806 * 13 12 11 15 15 C 1.38344 * 120.15424 * 0.29778 * 13 12 11 16 16 C 1.38742 * 119.97029 * 359.97438 * 15 13 12 17 17 O 1.35787 * 120.08071 * 179.97438 * 16 15 13 18 18 C 1.34803 * 117.00322 * 354.37979 * 17 16 15 19 19 H 1.08004 * 119.99790 * 5.09012 * 18 17 16 20 20 C 1.38635 * 120.00103 * 185.08521 * 18 17 16 21 21 N 1.31571 * 119.99895 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99808 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47071 * 90.00063 * 22 20 18 24 24 H 1.48496 * 109.46752 * 209.99796 * 22 20 18 25 25 H 1.48494 * 109.47345 * 330.00017 * 22 20 18 26 26 C 1.46926 * 118.73624 * 306.63795 * 6 5 4 27 27 C 1.52761 * 109.00651 * 53.31228 * 26 6 5 28 28 H 1.09001 * 109.46912 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47004 * 299.96498 * 1 2 3 30 30 H 1.08998 * 109.47007 * 59.96971 * 1 2 3 31 31 H 0.96693 * 114.00110 * 60.02643 * 3 2 1 32 32 H 1.08996 * 109.50097 * 58.66687 * 4 2 1 33 33 H 1.08994 * 109.52459 * 298.57965 * 4 2 1 34 34 H 1.08996 * 109.58925 * 294.84496 * 5 4 2 35 35 H 1.09006 * 109.58362 * 174.42301 * 5 4 2 36 36 H 0.97003 * 120.00321 * 4.52315 * 9 7 6 37 37 H 1.08006 * 119.98718 * 359.97438 * 11 10 9 38 38 H 1.07999 * 119.91511 * 179.72705 * 12 11 10 39 39 H 1.08000 * 120.01519 * 179.97438 * 15 13 12 40 40 H 0.97000 * 120.00028 * 180.02562 * 21 20 18 41 41 H 1.08994 * 109.58906 * 173.14353 * 26 6 5 42 42 H 1.08998 * 109.58771 * 293.57259 * 26 6 5 43 43 H 1.09001 * 109.56491 * 185.55340 * 27 26 6 44 44 H 1.08999 * 109.36314 * 65.49976 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0058 1.3474 0.0000 4 6 2.0399 -0.7208 -1.2501 5 6 3.5714 -0.6886 -1.2642 6 7 4.0679 -1.2488 0.0001 7 6 4.9615 -2.2578 0.0001 8 8 5.2946 -2.7748 -1.0487 9 7 5.4857 -2.6935 1.1627 10 6 6.4840 -3.6770 1.1561 11 6 7.1939 -3.9391 -0.0061 12 6 8.1745 -4.9128 -0.0127 13 6 8.4596 -5.6219 1.1429 14 9 9.4231 -6.5688 1.1322 15 6 7.7595 -5.3628 2.3077 16 6 6.7699 -4.3905 2.3198 17 8 6.0810 -4.1347 3.4617 18 6 6.3247 -4.9380 4.5165 19 1 7.0990 -5.6885 4.4561 20 6 5.5815 -4.8006 5.6787 21 7 5.8197 -5.5844 6.7083 22 14 4.2419 -3.5029 5.7828 23 1 2.9543 -4.0826 5.3231 24 1 4.1047 -3.0449 7.1887 25 1 4.6017 -2.3496 4.9193 26 6 3.5672 -0.6923 1.2643 27 6 2.0399 -0.7207 1.2501 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5133 0.8903 30 1 -0.3633 0.5143 -0.8897 31 1 1.7207 1.8653 0.7652 32 1 1.6573 -0.2208 -2.1399 33 1 1.6979 -1.7556 -1.2388 34 1 3.9143 0.3409 -1.3674 35 1 3.9417 -1.2846 -2.0984 36 1 5.1720 -2.3265 2.0040 37 1 6.9772 -3.3852 -0.9076 38 1 8.7232 -5.1186 -0.9199 39 1 7.9833 -5.9172 3.2071 40 1 5.2995 -5.4885 7.5214 41 1 3.9346 -1.2906 2.0979 42 1 3.9097 0.3369 1.3715 43 1 1.6572 -0.2206 2.1398 44 1 1.6978 -1.7556 1.2384 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178152288.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:46 Heat of formation + Delta-G solvation = -108.400921 kcal Electronic energy + Delta-G solvation = -30100.423645 eV Core-core repulsion = 25740.778848 eV Total energy + Delta-G solvation = -4359.644796 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -48.23720 -40.87552 -39.57529 -38.60888 -36.59091 -35.51632 -34.38978 -32.55802 -32.49021 -31.35665 -29.59369 -29.05390 -27.83344 -25.43700 -23.86642 -23.72895 -22.34976 -21.65058 -20.80432 -19.53521 -18.64416 -18.20848 -17.62388 -16.88606 -16.61779 -15.78543 -15.51802 -15.42066 -15.14381 -15.09116 -14.98333 -14.67472 -14.17579 -14.16100 -13.97226 -13.76216 -13.56873 -13.47328 -13.23869 -12.89379 -12.52333 -12.39527 -12.22401 -12.17806 -12.09086 -11.86062 -11.54277 -11.51304 -11.40840 -11.00442 -10.83628 -10.64252 -10.51255 -10.23040 -9.96790 -9.74930 -9.44023 -9.01520 -8.70260 -7.93402 -7.13312 -6.54825 -4.21709 1.79627 2.04496 2.63789 3.06220 3.09429 3.16361 3.26567 3.83748 3.91192 4.05874 4.30128 4.33646 4.43057 4.53562 4.54802 4.79873 4.94254 5.02787 5.03751 5.12401 5.19410 5.28070 5.36688 5.41394 5.50324 5.53990 5.64162 5.71900 5.72635 5.75297 5.79553 5.93008 6.03412 6.07565 6.35867 6.56796 6.64222 6.84031 6.92258 7.00924 7.10447 7.34257 7.48645 7.66374 7.87707 8.03161 8.65469 8.78343 9.33630 10.52762 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009956 B = 0.004286 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.656265 B = 6531.582604 C = 9067.297453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.131 3.869 3 O -0.556 6.556 4 C -0.120 4.120 5 C 0.135 3.865 6 N -0.626 5.626 7 C 0.707 3.293 8 O -0.578 6.578 9 N -0.666 5.666 10 C 0.085 3.915 11 C -0.077 4.077 12 C -0.214 4.214 13 C 0.120 3.880 14 F -0.150 7.150 15 C -0.241 4.241 16 C 0.157 3.843 17 O -0.216 6.216 18 C -0.389 4.389 19 H 0.109 0.891 20 C 0.065 3.935 21 N -0.873 5.873 22 Si 0.905 3.095 23 H -0.273 1.273 24 H -0.280 1.280 25 H -0.262 1.262 26 C 0.113 3.887 27 C -0.163 4.163 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.375 0.625 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.409 0.591 37 H 0.165 0.835 38 H 0.124 0.876 39 H 0.149 0.851 40 H 0.281 0.719 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.246 12.824 -11.126 19.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.090 3.910 3 O -0.362 6.362 4 C -0.159 4.159 5 C 0.012 3.988 6 N -0.364 5.364 7 C 0.410 3.590 8 O -0.457 6.457 9 N -0.313 5.313 10 C -0.010 4.010 11 C -0.097 4.097 12 C -0.234 4.234 13 C 0.100 3.900 14 F -0.129 7.129 15 C -0.262 4.262 16 C 0.103 3.897 17 O -0.121 6.121 18 C -0.464 4.464 19 H 0.126 0.874 20 C -0.139 4.139 21 N -0.510 5.510 22 Si 0.730 3.270 23 H -0.198 1.198 24 H -0.206 1.206 25 H -0.186 1.186 26 C -0.011 4.011 27 C -0.202 4.202 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.222 0.778 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.113 0.887 36 H 0.247 0.753 37 H 0.182 0.818 38 H 0.142 0.858 39 H 0.166 0.834 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.098 0.902 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.957 12.373 -12.126 19.503 hybrid contribution -0.909 0.417 1.543 1.839 sum -9.867 12.790 -10.584 19.312 Atomic orbital electron populations 1.22481 0.95564 1.02920 1.02534 1.21138 0.92368 0.82411 0.95053 1.86556 1.77197 1.22973 1.49449 1.21945 0.96482 1.00497 0.96931 1.21373 0.92583 0.99059 0.85765 1.47236 1.45271 1.36463 1.07393 1.15757 0.79385 0.79898 0.83970 1.90749 1.64591 1.59402 1.30963 1.42492 1.39498 1.41028 1.08310 1.16806 0.94992 0.95921 0.93263 1.21262 0.92950 0.97517 0.97975 1.20620 1.03802 1.01739 0.97247 1.17491 0.88638 0.89143 0.94747 1.91421 1.61414 1.62752 1.97291 1.20933 1.01287 1.04824 0.99114 1.18349 0.92452 0.92960 0.85932 1.83467 1.58298 1.52626 1.17687 1.20745 1.21045 1.15299 0.89339 0.87372 1.24453 0.97856 0.97591 0.93986 1.69642 1.40391 1.37175 1.03837 0.86213 0.81394 0.81633 0.77745 1.19808 1.20570 1.18644 1.21478 0.93805 0.99865 0.85936 1.22564 0.96303 1.02664 0.98648 0.91489 0.92238 0.91676 0.77814 0.90026 0.90149 0.90892 0.88723 0.75346 0.81817 0.85767 0.83364 0.90867 0.90313 0.90504 0.90191 0.90222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.17 8.81 37.16 0.33 -0.84 16 2 C 0.13 1.05 0.98 -90.58 -0.09 0.96 16 3 O -0.56 -4.42 11.71 -35.23 -0.41 -4.83 16 4 C -0.12 -1.09 5.11 -26.61 -0.14 -1.23 16 5 C 0.14 1.51 6.20 -3.71 -0.02 1.49 16 6 N -0.63 -8.17 2.98 -178.76 -0.53 -8.70 16 7 C 0.71 11.81 8.17 -86.92 -0.71 11.10 16 8 O -0.58 -10.88 12.55 5.29 0.07 -10.82 16 9 N -0.67 -11.82 5.26 -14.08 -0.07 -11.89 16 10 C 0.09 1.71 6.55 -83.44 -0.55 1.17 16 11 C -0.08 -1.45 8.82 -39.43 -0.35 -1.80 16 12 C -0.21 -3.93 10.02 -39.49 -0.40 -4.33 16 13 C 0.12 2.40 7.29 -39.43 -0.29 2.11 16 14 F -0.15 -2.92 17.26 2.25 0.04 -2.88 16 15 C -0.24 -5.27 9.14 -39.36 -0.36 -5.63 16 16 C 0.16 3.50 6.66 -38.94 -0.26 3.24 16 17 O -0.22 -5.20 7.92 0.01 0.00 -5.20 16 18 C -0.39 -10.35 9.95 30.88 0.31 -10.04 16 19 H 0.11 3.00 5.44 -52.48 -0.29 2.71 16 20 C 0.07 1.72 5.49 -17.52 -0.10 1.63 16 21 N -0.87 -24.16 13.96 55.48 0.77 -23.38 16 22 Si 0.90 19.75 28.62 -169.99 -4.86 14.89 16 23 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 24 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 25 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 26 C 0.11 1.23 6.12 -3.93 -0.02 1.20 16 27 C -0.16 -1.45 5.07 -26.83 -0.14 -1.58 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.37 1.72 9.04 45.56 0.41 2.13 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.79 7.81 -51.93 -0.41 0.39 16 35 H 0.09 1.16 7.00 -51.93 -0.36 0.80 16 36 H 0.41 6.87 5.71 -40.82 -0.23 6.64 16 37 H 0.16 3.07 5.25 -52.55 -0.28 2.80 16 38 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 39 H 0.15 3.39 5.64 -52.49 -0.30 3.09 16 40 H 0.28 7.16 8.31 -40.82 -0.34 6.83 16 41 H 0.08 0.93 5.65 -51.93 -0.29 0.64 16 42 H 0.08 0.75 7.81 -51.93 -0.41 0.35 16 43 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 358.67 15.07 5.41 5.41 Total: -1.00 -30.05 358.67 -7.04 -37.09 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -4.66 Total: 12.90 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -2.78 Total: -2.57 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 0.17 Total: -43.98 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.35 Total: -20.85 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.04 Total: -2.88 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -4.86 Total: 14.89 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.05 -7.04 -37.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178152288.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.315 kcal (2) G-P(sol) polarization free energy of solvation -30.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds