Wall clock time and date at job start Tue Mar 31 2020 21:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.45103 * 2 1 4 4 C 1.53044 * 109.46032 * 240.03204 * 2 1 3 5 5 C 1.53195 * 109.31023 * 178.61390 * 4 2 1 6 6 N 1.46928 * 108.77643 * 54.63869 * 5 4 2 7 7 C 1.34777 * 120.63269 * 126.36747 * 6 5 4 8 8 O 1.21585 * 119.99768 * 354.92142 * 7 6 5 9 9 N 1.34773 * 119.99841 * 174.91752 * 7 6 5 10 10 C 1.40135 * 119.99815 * 184.51440 * 9 7 6 11 11 C 1.38688 * 120.07932 * 17.86857 * 10 9 7 12 12 C 1.38195 * 120.02434 * 180.25425 * 11 10 9 13 13 C 1.38541 * 120.17349 * 359.45049 * 12 11 10 14 14 F 1.35102 * 119.92243 * 180.27806 * 13 12 11 15 15 C 1.38344 * 120.15424 * 0.29778 * 13 12 11 16 16 C 1.38742 * 119.97029 * 359.97438 * 15 13 12 17 17 O 1.35787 * 120.08071 * 179.97438 * 16 15 13 18 18 C 1.34803 * 117.00322 * 354.37979 * 17 16 15 19 19 H 1.08004 * 119.99790 * 5.09012 * 18 17 16 20 20 C 1.38635 * 120.00103 * 185.08521 * 18 17 16 21 21 N 1.31571 * 119.99895 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99808 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47071 * 90.00063 * 22 20 18 24 24 H 1.48496 * 109.46752 * 209.99796 * 22 20 18 25 25 H 1.48494 * 109.47345 * 330.00017 * 22 20 18 26 26 C 1.46926 * 118.73624 * 306.63795 * 6 5 4 27 27 C 1.52761 * 109.00651 * 53.31228 * 26 6 5 28 28 H 1.09001 * 109.46912 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47004 * 299.96498 * 1 2 3 30 30 H 1.08998 * 109.47007 * 59.96971 * 1 2 3 31 31 H 0.96693 * 114.00110 * 60.02643 * 3 2 1 32 32 H 1.08996 * 109.50097 * 58.66687 * 4 2 1 33 33 H 1.08994 * 109.52459 * 298.57965 * 4 2 1 34 34 H 1.08996 * 109.58925 * 294.84496 * 5 4 2 35 35 H 1.09006 * 109.58362 * 174.42301 * 5 4 2 36 36 H 0.97003 * 120.00321 * 4.52315 * 9 7 6 37 37 H 1.08006 * 119.98718 * 359.97438 * 11 10 9 38 38 H 1.07999 * 119.91511 * 179.72705 * 12 11 10 39 39 H 1.08000 * 120.01519 * 179.97438 * 15 13 12 40 40 H 0.97000 * 120.00028 * 180.02562 * 21 20 18 41 41 H 1.08994 * 109.58906 * 173.14353 * 26 6 5 42 42 H 1.08998 * 109.58771 * 293.57259 * 26 6 5 43 43 H 1.09001 * 109.56491 * 185.55340 * 27 26 6 44 44 H 1.08999 * 109.36314 * 65.49976 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0058 1.3474 0.0000 4 6 2.0399 -0.7208 -1.2501 5 6 3.5714 -0.6886 -1.2642 6 7 4.0679 -1.2488 0.0001 7 6 4.9615 -2.2578 0.0001 8 8 5.2946 -2.7748 -1.0487 9 7 5.4857 -2.6935 1.1627 10 6 6.4840 -3.6770 1.1561 11 6 7.1939 -3.9391 -0.0061 12 6 8.1745 -4.9128 -0.0127 13 6 8.4596 -5.6219 1.1429 14 9 9.4231 -6.5688 1.1322 15 6 7.7595 -5.3628 2.3077 16 6 6.7699 -4.3905 2.3198 17 8 6.0810 -4.1347 3.4617 18 6 6.3247 -4.9380 4.5165 19 1 7.0990 -5.6885 4.4561 20 6 5.5815 -4.8006 5.6787 21 7 5.8197 -5.5844 6.7083 22 14 4.2419 -3.5029 5.7828 23 1 2.9543 -4.0826 5.3231 24 1 4.1047 -3.0449 7.1887 25 1 4.6017 -2.3496 4.9193 26 6 3.5672 -0.6923 1.2643 27 6 2.0399 -0.7207 1.2501 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5133 0.8903 30 1 -0.3633 0.5143 -0.8897 31 1 1.7207 1.8653 0.7652 32 1 1.6573 -0.2208 -2.1399 33 1 1.6979 -1.7556 -1.2388 34 1 3.9143 0.3409 -1.3674 35 1 3.9417 -1.2846 -2.0984 36 1 5.1720 -2.3265 2.0040 37 1 6.9772 -3.3852 -0.9076 38 1 8.7232 -5.1186 -0.9199 39 1 7.9833 -5.9172 3.2071 40 1 5.2995 -5.4885 7.5214 41 1 3.9346 -1.2906 2.0979 42 1 3.9097 0.3369 1.3715 43 1 1.6572 -0.2206 2.1398 44 1 1.6978 -1.7556 1.2384 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178152288.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:45 Heat of formation + Delta-G solvation = -128.225972 kcal Electronic energy + Delta-G solvation = -30101.283323 eV Core-core repulsion = 25740.778848 eV Total energy + Delta-G solvation = -4360.504475 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.83954 -42.14077 -40.90143 -39.78807 -38.16818 -36.51180 -35.80530 -34.47700 -33.28407 -32.19228 -31.22873 -30.29520 -28.93151 -27.32803 -24.92966 -24.54503 -23.83230 -23.15992 -21.77942 -20.62949 -20.21010 -19.86354 -19.12899 -18.33353 -17.35004 -17.26157 -16.97972 -16.68078 -16.52318 -16.46819 -15.89402 -15.83516 -15.72329 -15.47813 -15.21436 -15.13131 -15.00467 -14.76800 -14.30150 -14.27004 -13.96631 -13.64462 -13.46529 -13.22216 -12.95882 -12.82739 -12.78823 -12.63350 -12.45079 -12.25611 -12.16099 -12.15398 -11.65978 -11.47218 -11.32772 -10.99848 -10.92183 -10.77147 -9.78091 -9.59095 -8.72884 -8.51625 -6.25885 0.17146 0.39193 1.30831 1.36945 1.44437 1.49910 1.92377 2.25739 2.62333 2.66606 2.81409 3.01365 3.31096 3.38596 3.63859 3.74203 3.87013 3.91180 4.02734 4.12541 4.22771 4.29785 4.35519 4.47769 4.49345 4.62153 4.74602 4.74946 4.82794 4.89604 4.95697 4.98184 5.03187 5.08801 5.16964 5.28695 5.30285 5.33329 5.44737 5.49072 5.62390 5.79873 5.84024 6.08705 6.73407 6.79713 6.94482 7.31371 7.43717 8.59445 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009956 B = 0.004286 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.656265 B = 6531.582604 C = 9067.297453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.137 3.863 3 O -0.566 6.566 4 C -0.119 4.119 5 C 0.134 3.866 6 N -0.617 5.617 7 C 0.704 3.296 8 O -0.602 6.602 9 N -0.667 5.667 10 C 0.096 3.904 11 C -0.077 4.077 12 C -0.187 4.187 13 C 0.110 3.890 14 F -0.147 7.147 15 C -0.251 4.251 16 C 0.132 3.868 17 O -0.224 6.224 18 C -0.402 4.402 19 H 0.079 0.921 20 C 0.012 3.988 21 N -0.920 5.920 22 Si 0.969 3.031 23 H -0.266 1.266 24 H -0.271 1.271 25 H -0.243 1.243 26 C 0.106 3.894 27 C -0.161 4.161 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.391 0.609 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.413 0.587 37 H 0.175 0.825 38 H 0.160 0.840 39 H 0.128 0.872 40 H 0.286 0.714 41 H 0.068 0.932 42 H 0.093 0.907 43 H 0.104 0.896 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.948 15.332 -12.749 22.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.096 3.904 3 O -0.374 6.374 4 C -0.157 4.157 5 C 0.012 3.988 6 N -0.354 5.354 7 C 0.406 3.594 8 O -0.483 6.483 9 N -0.315 5.315 10 C 0.000 4.000 11 C -0.098 4.098 12 C -0.206 4.206 13 C 0.090 3.910 14 F -0.126 7.126 15 C -0.271 4.271 16 C 0.080 3.920 17 O -0.131 6.131 18 C -0.478 4.478 19 H 0.096 0.904 20 C -0.188 4.188 21 N -0.560 5.560 22 Si 0.789 3.211 23 H -0.191 1.191 24 H -0.196 1.196 25 H -0.166 1.166 26 C -0.017 4.017 27 C -0.199 4.199 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.240 0.760 32 H 0.113 0.887 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.252 0.748 37 H 0.192 0.808 38 H 0.177 0.823 39 H 0.145 0.855 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.111 0.889 43 H 0.122 0.878 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.674 14.925 -13.775 22.944 hybrid contribution -0.273 -0.358 1.825 1.880 sum -10.947 14.567 -11.950 21.791 Atomic orbital electron populations 1.22424 0.94204 1.03028 1.03365 1.21023 0.93227 0.82389 0.93779 1.86523 1.77472 1.22822 1.50631 1.21940 0.94683 1.00660 0.98443 1.21493 0.94121 0.98810 0.84402 1.47343 1.43902 1.35065 1.09067 1.15882 0.79870 0.80491 0.83139 1.90714 1.65636 1.60461 1.31509 1.42509 1.39231 1.40636 1.09123 1.16950 0.95025 0.95443 0.92580 1.21483 0.92785 0.97712 0.97802 1.20998 1.02434 0.99617 0.97573 1.17517 0.88943 0.89854 0.94705 1.91427 1.61201 1.62670 1.97263 1.20938 1.01957 1.04917 0.99334 1.18620 0.92994 0.94034 0.86327 1.83417 1.59328 1.52664 1.17688 1.20636 1.20904 1.15515 0.90702 0.90381 1.25350 1.00252 0.99896 0.93260 1.69744 1.42158 1.39379 1.04693 0.85255 0.78076 0.79269 0.78459 1.19066 1.19596 1.16603 1.21700 0.95371 1.00222 0.84369 1.22580 0.94541 1.02508 1.00283 0.91746 0.90861 0.91446 0.75960 0.88679 0.90790 0.90195 0.90091 0.74839 0.80798 0.82271 0.85450 0.90449 0.91332 0.88925 0.87803 0.91380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.72 8.81 71.98 0.63 -1.09 16 2 C 0.14 1.78 0.98 -10.77 -0.01 1.77 16 3 O -0.57 -7.02 11.71 -148.98 -1.74 -8.76 16 4 C -0.12 -1.90 5.11 30.67 0.16 -1.74 16 5 C 0.13 2.75 6.20 86.36 0.54 3.29 16 6 N -0.62 -15.02 2.98 -837.74 -2.50 -17.51 16 7 C 0.70 22.56 8.17 179.06 1.46 24.03 16 8 O -0.60 -21.90 12.55 -3.98 -0.05 -21.95 16 9 N -0.67 -23.01 5.26 -316.71 -1.66 -24.68 16 10 C 0.10 3.80 6.55 38.22 0.25 4.05 16 11 C -0.08 -2.81 8.82 22.37 0.20 -2.61 16 12 C -0.19 -6.45 10.02 22.33 0.22 -6.22 16 13 C 0.11 4.35 7.29 22.37 0.16 4.51 16 14 F -0.15 -5.63 17.26 44.97 0.78 -4.86 16 15 C -0.25 -11.33 9.14 22.42 0.20 -11.12 16 16 C 0.13 5.99 6.66 22.69 0.15 6.14 16 17 O -0.22 -11.06 7.92 -22.87 -0.18 -11.24 16 18 C -0.40 -22.33 9.95 67.91 0.68 -21.65 16 19 H 0.08 4.67 5.44 -2.91 -0.02 4.66 16 20 C 0.01 0.62 5.49 84.83 0.47 1.09 16 21 N -0.92 -52.78 13.96 21.61 0.30 -52.48 16 22 Si 0.97 40.48 28.62 68.60 1.96 42.45 16 23 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 24 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 25 H -0.24 -9.25 7.11 99.48 0.71 -8.54 16 26 C 0.11 2.05 6.12 86.22 0.53 2.57 16 27 C -0.16 -2.37 5.07 30.53 0.15 -2.22 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 0.54 8.14 -2.39 -0.02 0.53 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.39 2.06 9.04 -74.06 -0.67 1.39 16 32 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.08 1.56 7.81 -2.39 -0.02 1.54 16 35 H 0.08 1.90 7.00 -2.38 -0.02 1.88 16 36 H 0.41 13.46 5.71 -92.71 -0.53 12.93 16 37 H 0.18 6.14 5.25 -3.91 -0.02 6.12 16 38 H 0.16 4.42 8.06 -2.91 -0.02 4.40 16 39 H 0.13 6.26 5.64 -2.91 -0.02 6.25 16 40 H 0.29 15.01 8.31 -92.71 -0.77 14.24 16 41 H 0.07 1.48 5.65 -2.39 -0.01 1.47 16 42 H 0.09 1.53 7.81 -2.39 -0.02 1.51 16 43 H 0.10 1.06 8.14 -2.39 -0.02 1.05 16 44 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -66.51 358.67 2.57 -63.94 By element: Atomic # 1 Polarization: 34.42 SS G_CDS: -0.13 Total: 34.29 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 5.79 Total: 0.80 kcal Atomic # 7 Polarization: -90.81 SS G_CDS: -3.86 Total: -94.67 kcal Atomic # 8 Polarization: -39.98 SS G_CDS: -1.98 Total: -41.96 kcal Atomic # 9 Polarization: -5.63 SS G_CDS: 0.78 Total: -4.86 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 1.96 Total: 42.45 kcal Total: -66.51 2.57 -63.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178152288.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.286 kcal (2) G-P(sol) polarization free energy of solvation -66.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds