Wall clock time and date at job start Tue Mar 31 2020 20:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86802 * 120.00376 * 2 1 4 4 H 1.48498 * 109.47504 * 270.00313 * 3 2 1 5 5 H 1.48505 * 109.46893 * 30.00271 * 3 2 1 6 6 H 1.48498 * 109.47246 * 149.99616 * 3 2 1 7 7 C 1.38644 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00282 * 180.02562 * 7 2 1 9 9 O 1.34804 * 119.99457 * 0.02562 * 7 2 1 10 10 C 1.35784 * 116.99503 * 185.11537 * 9 7 2 11 11 C 1.38738 * 120.08739 * 353.72375 * 10 9 7 12 12 C 1.38343 * 119.97527 * 180.02562 * 11 10 9 13 13 F 1.35102 * 119.92586 * 179.97438 * 12 11 10 14 14 C 1.38542 * 120.15146 * 359.97438 * 12 11 10 15 15 C 1.38196 * 120.17807 * 0.02562 * 14 12 11 16 16 C 1.38699 * 120.02174 * 0.23567 * 15 14 12 17 17 N 1.40132 * 120.08047 * 179.74406 * 16 15 14 18 18 C 1.34776 * 119.99797 * 31.42752 * 17 16 15 19 19 O 1.21594 * 120.00294 * 4.46646 * 18 17 16 20 20 N 1.34774 * 119.99633 * 184.46170 * 18 17 16 21 21 C 1.46503 * 119.99672 * 174.87252 * 20 18 17 22 22 C 1.53002 * 110.43557 * 301.76614 * 21 20 18 23 23 O 1.42901 * 109.47044 * 304.59239 * 22 21 20 24 24 C 1.54888 * 110.48599 * 179.08212 * 21 20 18 25 25 C 1.54889 * 102.74910 * 279.26566 * 24 21 20 26 26 C 1.54262 * 104.19682 * 322.05826 * 25 24 21 27 27 C 1.53879 * 106.59679 * 23.60824 * 26 25 24 28 28 H 0.97001 * 119.99409 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.01390 * 0.02562 * 11 10 9 30 30 H 1.08007 * 119.91293 * 179.97438 * 14 12 11 31 31 H 1.08006 * 119.99231 * 179.97438 * 15 14 12 32 32 H 0.96998 * 119.99635 * 211.43357 * 17 16 15 33 33 H 0.96996 * 120.00318 * 354.87561 * 20 18 17 34 34 H 1.09000 * 109.46843 * 64.59752 * 22 21 20 35 35 H 1.08998 * 109.46542 * 184.59189 * 22 21 20 36 36 H 0.96703 * 113.99470 * 180.02562 * 23 22 21 37 37 H 1.08998 * 110.75608 * 37.57983 * 24 21 20 38 38 H 1.09000 * 110.76069 * 160.94721 * 24 21 20 39 39 H 1.09002 * 110.48604 * 203.37790 * 25 24 21 40 40 H 1.09000 * 110.48416 * 80.73565 * 25 24 21 41 41 H 1.09007 * 110.03063 * 264.32889 * 26 25 24 42 42 H 1.09000 * 110.03469 * 142.89577 * 26 25 24 43 43 H 1.09001 * 110.03184 * 240.71634 * 27 26 25 44 44 H 1.08998 * 110.02744 * 119.29015 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0465 -1.4000 5 1 1.4473 2.6527 0.7001 6 1 3.5473 1.4401 0.7001 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0001 9 8 1.3348 -2.3681 -0.0016 10 6 2.0701 -3.5045 0.1058 11 6 3.4557 -3.4415 0.0792 12 6 4.2026 -4.6009 0.1883 13 9 5.5519 -4.5384 0.1618 14 6 3.5701 -5.8259 0.3247 15 6 2.1902 -5.8960 0.3519 16 6 1.4342 -4.7388 0.2377 17 7 0.0348 -4.8090 0.2598 18 6 -0.5805 -5.7681 0.9795 19 8 0.0743 -6.5215 1.6738 20 7 -1.9216 -5.8920 0.9296 21 6 -2.5808 -7.0025 1.6215 22 6 -2.0494 -8.3424 1.1084 23 8 -2.2080 -8.4060 -0.3103 24 6 -4.1167 -6.9196 1.4391 25 6 -4.5307 -5.8699 2.5002 26 6 -3.6139 -6.1675 3.7046 27 6 -2.3741 -6.8877 3.1458 28 1 -0.4849 0.8401 -0.0004 29 1 3.9512 -2.4877 -0.0266 30 1 4.1570 -6.7286 0.4091 31 1 1.7002 -6.8526 0.4579 32 1 -0.4910 -4.1674 -0.2430 33 1 -2.4504 -5.2461 0.4356 34 1 -0.9930 -8.4348 1.3605 35 1 -2.6063 -9.1560 1.5732 36 1 -1.8919 -9.2303 -0.7048 37 1 -4.3685 -6.5750 0.4361 38 1 -4.5829 -7.8828 1.6462 39 1 -5.5772 -5.9989 2.7763 40 1 -4.3551 -4.8608 2.1273 41 1 -4.1302 -6.8112 4.4168 42 1 -3.3185 -5.2364 4.1881 43 1 -2.2888 -7.8808 3.5869 44 1 -1.4771 -6.3060 3.3583 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178159938.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:53 Heat of formation + Delta-G solvation = -125.564495 kcal Electronic energy + Delta-G solvation = -29994.545756 eV Core-core repulsion = 25634.156692 eV Total energy + Delta-G solvation = -4360.389065 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -48.21119 -40.58206 -39.29161 -37.98104 -36.24990 -36.16146 -33.96542 -33.15982 -32.37774 -29.63350 -29.27082 -28.86162 -27.78636 -25.47414 -24.45870 -22.69960 -21.80579 -20.81011 -20.57131 -19.42163 -18.31173 -18.06161 -17.60092 -17.28959 -16.64887 -15.82611 -15.70963 -15.20699 -15.16328 -14.94195 -14.74476 -14.59867 -14.28316 -14.26308 -13.70843 -13.60969 -13.47704 -13.25274 -13.06750 -12.50552 -12.32789 -12.10806 -11.82666 -11.63016 -11.52162 -11.33092 -11.30015 -11.18576 -10.96219 -10.86576 -10.68748 -10.54514 -10.50706 -10.15043 -9.76625 -9.55495 -9.34495 -8.93638 -8.82541 -7.83269 -7.01894 -6.57677 -4.15063 1.89669 2.16001 2.96566 3.07719 3.09597 3.14028 3.53915 3.87030 4.05130 4.39800 4.41034 4.51280 4.62598 4.82708 4.87635 5.00467 5.15733 5.16915 5.32606 5.35907 5.39242 5.46384 5.60156 5.62483 5.72705 5.77231 5.79048 5.84706 5.91424 6.06311 6.07555 6.15406 6.26044 6.34794 6.60095 6.72700 6.80394 6.95190 6.96913 7.12089 7.22152 7.38811 7.58010 7.70613 7.86675 8.36595 8.88183 8.95643 9.50470 10.59586 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010459 B = 0.003753 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.361962 B = 7459.045229 C = 9470.067355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.043 3.957 3 Si 0.942 3.058 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.391 4.391 8 H 0.094 0.906 9 O -0.170 6.170 10 C 0.155 3.845 11 C -0.257 4.257 12 C 0.125 3.875 13 F -0.152 7.152 14 C -0.226 4.226 15 C -0.053 4.053 16 C 0.086 3.914 17 N -0.665 5.665 18 C 0.710 3.290 19 O -0.587 6.587 20 N -0.725 5.725 21 C 0.199 3.801 22 C 0.066 3.934 23 O -0.566 6.566 24 C -0.118 4.118 25 C -0.127 4.127 26 C -0.123 4.123 27 C -0.128 4.128 28 H 0.271 0.729 29 H 0.142 0.858 30 H 0.121 0.879 31 H 0.140 0.860 32 H 0.411 0.589 33 H 0.397 0.603 34 H 0.070 0.930 35 H 0.047 0.953 36 H 0.375 0.625 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.802 -13.216 2.108 15.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.162 4.162 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.467 4.467 8 H 0.111 0.889 9 O -0.073 6.073 10 C 0.099 3.901 11 C -0.278 4.278 12 C 0.105 3.895 13 F -0.131 7.131 14 C -0.247 4.247 15 C -0.074 4.074 16 C -0.009 4.009 17 N -0.311 5.311 18 C 0.412 3.588 19 O -0.466 6.466 20 N -0.380 5.380 21 C 0.112 3.888 22 C -0.012 4.012 23 O -0.371 6.371 24 C -0.156 4.156 25 C -0.165 4.165 26 C -0.161 4.161 27 C -0.167 4.167 28 H 0.081 0.919 29 H 0.160 0.840 30 H 0.139 0.861 31 H 0.157 0.843 32 H 0.246 0.754 33 H 0.231 0.769 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.221 0.779 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.916 -13.085 2.812 15.550 hybrid contribution 0.541 0.992 -0.484 1.229 sum -7.375 -12.093 2.328 14.355 Atomic orbital electron populations 1.70012 1.05921 1.27885 1.45656 1.25268 0.95894 0.98801 0.96242 0.85692 0.79039 0.79839 0.78824 1.19769 1.20202 1.19067 1.21334 0.91943 0.80432 1.53013 0.88883 1.83913 1.33882 1.11223 1.78310 1.18769 0.89441 0.86983 0.94890 1.20831 0.93430 0.98419 1.15144 1.17438 0.75912 0.94377 1.01790 1.91406 1.30197 1.97385 1.94140 1.20457 0.94600 0.95847 1.13749 1.20559 0.92114 0.97095 0.97608 1.16645 0.81432 0.91108 1.11731 1.42249 1.05126 1.33327 1.50447 1.15794 0.81678 0.81489 0.79878 1.90827 1.64445 1.46737 1.44594 1.44904 1.05072 1.30732 1.57270 1.20872 0.91808 0.84700 0.91432 1.22646 1.01445 0.95797 0.81349 1.86475 1.86707 1.43254 1.20637 1.22713 0.92948 1.00087 0.99882 1.22414 0.99209 0.99327 0.95536 1.22129 0.95744 1.00551 0.97677 1.22492 0.99489 1.01472 0.93212 0.91909 0.84039 0.86067 0.84267 0.75393 0.76856 0.91206 0.93502 0.77915 0.90505 0.90118 0.91495 0.91274 0.91910 0.91664 0.91183 0.89582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.67 13.67 55.48 0.76 -22.91 16 2 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 3 Si 0.94 19.90 29.55 -169.99 -5.02 14.87 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.39 -10.43 9.49 30.88 0.29 -10.13 16 8 H 0.09 2.34 5.21 -52.49 -0.27 2.06 16 9 O -0.17 -4.49 9.27 0.02 0.00 -4.49 16 10 C 0.16 3.63 6.66 -38.94 -0.26 3.37 16 11 C -0.26 -5.70 9.14 -39.36 -0.36 -6.06 16 12 C 0.12 2.53 7.29 -39.43 -0.29 2.24 16 13 F -0.15 -2.96 17.26 2.25 0.04 -2.92 16 14 C -0.23 -4.26 10.02 -39.48 -0.40 -4.66 16 15 C -0.05 -1.03 8.66 -39.43 -0.34 -1.37 16 16 C 0.09 1.81 6.34 -83.43 -0.53 1.28 16 17 N -0.67 -12.60 5.23 -14.07 -0.07 -12.67 16 18 C 0.71 12.45 7.57 -86.92 -0.66 11.79 16 19 O -0.59 -11.31 10.77 5.28 0.06 -11.25 16 20 N -0.72 -10.10 4.92 -50.87 -0.25 -10.35 16 21 C 0.20 2.37 0.54 -130.16 -0.07 2.30 16 22 C 0.07 0.76 5.56 37.16 0.21 0.97 16 23 O -0.57 -6.50 13.32 -35.23 -0.47 -6.97 16 24 C -0.12 -1.13 5.72 -24.74 -0.14 -1.27 16 25 C -0.13 -1.19 6.79 -25.07 -0.17 -1.36 16 26 C -0.12 -1.25 6.80 -25.61 -0.17 -1.43 16 27 C -0.13 -1.54 5.67 -25.61 -0.15 -1.68 16 28 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 29 H 0.14 3.13 5.65 -52.49 -0.30 2.83 16 30 H 0.12 1.97 8.06 -52.48 -0.42 1.55 16 31 H 0.14 2.62 6.24 -52.48 -0.33 2.30 16 32 H 0.41 7.54 8.51 -40.82 -0.35 7.19 16 33 H 0.40 5.01 8.51 -40.82 -0.35 4.67 16 34 H 0.07 0.96 6.44 -51.93 -0.33 0.63 16 35 H 0.05 0.43 8.09 -51.93 -0.42 0.01 16 36 H 0.37 2.79 9.12 45.56 0.42 3.21 16 37 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 38 H 0.08 0.67 8.02 -51.93 -0.42 0.25 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.75 7.84 -51.93 -0.41 0.34 16 44 H 0.09 1.32 6.53 -51.93 -0.34 0.98 16 LS Contribution 364.24 15.07 5.49 5.49 Total: -1.00 -30.78 364.24 -7.36 -38.14 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: -4.76 Total: 18.04 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -3.13 Total: -4.99 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: 0.43 Total: -45.93 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.41 Total: -22.71 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.04 Total: -2.92 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.78 -7.36 -38.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178159938.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.420 kcal (2) G-P(sol) polarization free energy of solvation -30.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds