Wall clock time and date at job start Tue Mar 31 2020 20:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86805 * 119.99932 * 2 1 4 4 H 1.48500 * 109.47078 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47036 * 300.00169 * 3 2 1 6 6 H 1.48500 * 109.46989 * 60.00345 * 3 2 1 7 7 C 1.38634 * 120.00360 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00333 * 180.02562 * 7 2 1 9 9 O 1.34805 * 119.99674 * 359.97438 * 7 2 1 10 10 C 1.35780 * 116.99851 * 185.05189 * 9 7 2 11 11 C 1.38735 * 120.08796 * 354.55959 * 10 9 7 12 12 C 1.38345 * 119.97727 * 180.02562 * 11 10 9 13 13 F 1.35095 * 119.92358 * 179.72741 * 12 11 10 14 14 C 1.38546 * 120.14799 * 0.02562 * 12 11 10 15 15 C 1.38192 * 120.17887 * 0.02562 * 14 12 11 16 16 C 1.38691 * 120.01908 * 359.97438 * 15 14 12 17 17 N 1.40140 * 120.07516 * 179.97438 * 16 15 14 18 18 C 1.34785 * 119.99490 * 34.60610 * 17 16 15 19 19 O 1.21584 * 120.00113 * 355.63116 * 18 17 16 20 20 N 1.34777 * 119.99587 * 175.62318 * 18 17 16 21 21 C 1.46499 * 119.99635 * 179.97438 * 20 18 17 22 22 H 1.08993 * 109.54262 * 325.16817 * 21 20 18 23 23 C 1.54206 * 109.53774 * 205.00089 * 21 20 18 24 24 C 1.46285 * 111.98962 * 162.60988 * 23 21 20 25 25 C 1.54119 * 112.20586 * 61.40901 * 24 23 21 26 26 O 1.40324 * 108.70746 * 280.44798 * 25 24 23 27 27 C 1.43986 * 116.58244 * 95.03894 * 26 25 24 28 28 C 1.50626 * 109.53547 * 85.41690 * 21 20 18 29 29 H 0.97000 * 120.00158 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.01180 * 0.02562 * 11 10 9 31 31 H 1.08002 * 119.91045 * 179.97438 * 14 12 11 32 32 H 1.07997 * 119.99016 * 180.02562 * 15 14 12 33 33 H 0.96991 * 120.00373 * 214.60289 * 17 16 15 34 34 H 0.96997 * 119.99956 * 359.97438 * 20 18 17 35 35 H 1.09006 * 108.97699 * 283.25487 * 23 21 20 36 36 H 1.08998 * 108.97585 * 42.04382 * 23 21 20 37 37 H 1.08995 * 108.93977 * 182.11916 * 24 23 21 38 38 H 1.09005 * 108.93045 * 300.80361 * 24 23 21 39 39 H 1.09002 * 109.59254 * 40.21108 * 25 24 23 40 40 H 1.09000 * 109.59848 * 160.51920 * 25 24 23 41 41 H 1.08994 * 108.69234 * 78.90912 * 27 26 25 42 42 H 1.09002 * 108.69128 * 197.01014 * 27 26 25 43 43 H 1.08996 * 108.88277 * 330.96846 * 28 21 20 44 44 H 1.09000 * 108.88627 * 89.43487 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.7097 1.3464 0.0006 5 1 1.8909 2.3965 -1.2124 6 1 1.8910 2.3964 1.2125 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0001 9 8 1.3349 -2.3680 -0.0005 10 6 2.0704 -3.5044 0.1055 11 6 3.4562 -3.4396 0.0939 12 6 4.2034 -4.5989 0.2015 13 9 5.5527 -4.5351 0.1846 14 6 3.5709 -5.8259 0.3204 15 6 2.1909 -5.8978 0.3315 16 6 1.4348 -4.7401 0.2241 17 7 0.0353 -4.8118 0.2347 18 6 -0.5862 -5.7391 0.9900 19 8 0.0668 -6.5638 1.5997 20 7 -1.9316 -5.7520 1.0696 21 6 -2.6071 -6.7602 1.8901 22 1 -2.0518 -7.6971 1.8471 23 6 -4.0374 -6.9836 1.3588 24 6 -4.6159 -8.2335 1.8518 25 6 -4.7360 -8.2537 3.3881 26 8 -3.4795 -8.5579 3.9338 27 6 -2.6604 -7.4410 4.3273 28 6 -2.6813 -6.2816 3.3164 29 1 -0.4850 0.8400 0.0004 30 1 3.9515 -2.4844 0.0009 31 1 4.1579 -6.7285 0.4037 32 1 1.7010 -6.8558 0.4247 33 1 -0.4861 -4.1941 -0.3014 34 1 -2.4525 -5.0937 0.5836 35 1 -4.6672 -6.1523 1.6758 36 1 -4.0104 -7.0122 0.2695 37 1 -5.6077 -8.3598 1.4177 38 1 -3.9840 -9.0641 1.5368 39 1 -5.0612 -7.2754 3.7422 40 1 -5.4606 -9.0106 3.6883 41 1 -3.0129 -7.0713 5.2902 42 1 -1.6322 -7.7846 4.4408 43 1 -1.8326 -5.6267 3.5133 44 1 -3.6016 -5.7133 3.4505 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180538017.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:56 Heat of formation + Delta-G solvation = -119.685775 kcal Electronic energy + Delta-G solvation = -29430.178760 eV Core-core repulsion = 25070.044616 eV Total energy + Delta-G solvation = -4360.134144 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -48.23881 -40.49376 -39.54891 -38.59763 -36.53815 -35.65456 -34.02427 -33.38934 -32.41523 -31.59800 -29.39385 -28.23883 -26.73980 -25.55747 -25.32395 -22.56866 -21.75482 -21.27848 -20.69152 -20.28393 -18.34895 -18.20643 -17.63775 -17.01885 -17.00347 -16.28545 -15.57478 -15.36629 -15.23816 -14.99226 -14.77581 -14.69191 -14.32628 -14.22876 -13.93634 -13.68842 -13.52918 -13.44620 -13.22690 -13.18152 -12.63447 -12.29807 -12.12701 -11.77065 -11.67382 -11.47059 -11.37361 -11.04956 -10.96338 -10.85144 -10.72556 -10.62954 -10.52215 -9.86643 -9.77538 -9.69709 -9.42496 -8.98463 -8.96291 -7.87133 -7.08934 -6.61502 -4.18925 1.86348 2.13397 2.86639 3.04552 3.07356 3.12435 3.46894 3.67347 3.83942 4.35874 4.38012 4.44147 4.54879 4.74193 4.84412 4.88344 4.97043 4.97400 5.13767 5.15354 5.25455 5.31521 5.42490 5.55206 5.59872 5.71692 5.73574 5.75363 5.89447 5.97452 5.98488 6.04973 6.11148 6.23081 6.55531 6.65730 6.71367 6.91963 6.94823 7.08390 7.15802 7.21626 7.31841 7.67462 7.83132 8.27612 8.84149 8.87509 9.46630 10.55820 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011441 B = 0.003112 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.681561 B = 8994.946936 C =10797.219965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.043 3.957 3 Si 0.942 3.058 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.391 4.391 8 H 0.095 0.905 9 O -0.170 6.170 10 C 0.157 3.843 11 C -0.259 4.259 12 C 0.128 3.872 13 F -0.152 7.152 14 C -0.228 4.228 15 C -0.051 4.051 16 C 0.079 3.921 17 N -0.665 5.665 18 C 0.705 3.295 19 O -0.584 6.584 20 N -0.744 5.744 21 C 0.170 3.830 22 H 0.096 0.904 23 C -0.127 4.127 24 C -0.148 4.148 25 C 0.064 3.936 26 O -0.385 6.385 27 C 0.069 3.931 28 C -0.167 4.167 29 H 0.271 0.729 30 H 0.143 0.857 31 H 0.122 0.878 32 H 0.143 0.857 33 H 0.410 0.590 34 H 0.397 0.603 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.052 0.948 40 H 0.083 0.917 41 H 0.051 0.949 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.339 -11.161 2.745 14.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.162 4.162 3 Si 0.766 3.234 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.467 4.467 8 H 0.112 0.888 9 O -0.073 6.073 10 C 0.101 3.899 11 C -0.280 4.280 12 C 0.108 3.892 13 F -0.131 7.131 14 C -0.248 4.248 15 C -0.071 4.071 16 C -0.016 4.016 17 N -0.312 5.312 18 C 0.405 3.595 19 O -0.462 6.462 20 N -0.399 5.399 21 C 0.065 3.935 22 H 0.114 0.886 23 C -0.165 4.165 24 C -0.186 4.186 25 C -0.013 4.013 26 O -0.304 6.304 27 C -0.008 4.008 28 C -0.206 4.206 29 H 0.080 0.920 30 H 0.160 0.840 31 H 0.140 0.860 32 H 0.161 0.839 33 H 0.246 0.754 34 H 0.231 0.769 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.070 0.930 40 H 0.101 0.899 41 H 0.069 0.931 42 H 0.111 0.889 43 H 0.103 0.897 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.118 -11.850 3.311 15.314 hybrid contribution 0.146 2.027 -0.501 2.093 sum -8.971 -9.823 2.810 13.597 Atomic orbital electron populations 1.70015 1.05927 1.27802 1.45758 1.25269 0.95901 0.98819 0.96214 0.85624 0.79319 0.80103 0.78328 1.18944 1.20042 1.20065 1.21393 0.92001 0.80410 1.52902 0.88796 1.83916 1.33898 1.11242 1.78250 1.18789 0.89453 0.86974 0.94643 1.20843 0.93423 0.98441 1.15270 1.17460 0.75931 0.94365 1.01462 1.91408 1.30169 1.97381 1.94099 1.20492 0.94644 0.95844 1.13819 1.20685 0.92130 0.97330 0.96979 1.16636 0.81289 0.91042 1.12645 1.42196 1.05209 1.36312 1.47446 1.15881 0.81799 0.82070 0.79718 1.90872 1.64309 1.40827 1.50156 1.45198 1.04931 1.36251 1.53488 1.20433 0.92402 0.92077 0.88607 0.88646 1.20886 0.95131 0.98840 1.01612 1.21058 1.01748 0.98553 0.97224 1.22354 0.85907 1.00812 0.92227 1.87478 1.28492 1.32646 1.81754 1.22898 0.95678 0.86733 0.95484 1.22423 1.03527 0.99077 0.95554 0.91954 0.83993 0.85959 0.83920 0.75416 0.76908 0.91572 0.90972 0.90848 0.90728 0.92975 0.89896 0.93070 0.88886 0.89657 0.91737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.31 13.67 55.48 0.76 -22.56 16 2 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 3 Si 0.94 19.65 29.55 -169.99 -5.02 14.63 16 4 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.39 -10.28 9.49 30.88 0.29 -9.98 16 8 H 0.09 2.34 5.20 -52.49 -0.27 2.06 16 9 O -0.17 -4.41 9.31 0.03 0.00 -4.41 16 10 C 0.16 3.62 6.66 -38.94 -0.26 3.36 16 11 C -0.26 -5.66 9.14 -39.36 -0.36 -6.02 16 12 C 0.13 2.57 7.29 -39.43 -0.29 2.28 16 13 F -0.15 -2.92 17.26 2.25 0.04 -2.88 16 14 C -0.23 -4.26 10.02 -39.48 -0.40 -4.66 16 15 C -0.05 -0.98 8.70 -39.43 -0.34 -1.32 16 16 C 0.08 1.63 6.33 -83.43 -0.53 1.10 16 17 N -0.66 -12.16 5.20 -14.07 -0.07 -12.23 16 18 C 0.70 12.11 8.22 -86.91 -0.71 11.40 16 19 O -0.58 -11.54 13.42 5.29 0.07 -11.47 16 20 N -0.74 -9.69 5.00 -59.23 -0.30 -9.99 16 21 C 0.17 1.97 2.15 -68.49 -0.15 1.82 16 22 H 0.10 1.32 7.26 -51.93 -0.38 0.95 16 23 C -0.13 -1.08 4.83 -29.29 -0.14 -1.23 16 24 C -0.15 -1.16 5.47 -29.34 -0.16 -1.32 16 25 C 0.06 0.53 6.38 37.74 0.24 0.77 16 26 O -0.38 -4.28 10.17 -33.69 -0.34 -4.63 16 27 C 0.07 0.74 6.67 37.59 0.25 0.99 16 28 C -0.17 -1.88 5.01 -27.49 -0.14 -2.02 16 29 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 30 H 0.14 3.11 5.64 -52.48 -0.30 2.81 16 31 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 32 H 0.14 2.70 6.19 -52.49 -0.32 2.38 16 33 H 0.41 7.08 8.58 -40.82 -0.35 6.73 16 34 H 0.40 4.36 8.63 -40.82 -0.35 4.01 16 35 H 0.07 0.51 7.60 -51.93 -0.39 0.11 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 39 H 0.05 0.39 6.98 -51.93 -0.36 0.03 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.08 1.17 7.82 -51.93 -0.41 0.76 16 44 H 0.06 0.63 6.84 -51.93 -0.35 0.28 16 LS Contribution 362.70 15.07 5.47 5.47 Total: -1.00 -30.17 362.70 -7.77 -37.94 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -5.58 Total: 13.95 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -2.79 Total: -3.82 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: 0.39 Total: -44.78 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.27 Total: -20.50 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.04 Total: -2.88 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.17 -7.77 -37.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180538017.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.743 kcal (2) G-P(sol) polarization free energy of solvation -30.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds