Wall clock time and date at job start Tue Mar 31 2020 20:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86805 * 119.99932 * 2 1 4 4 H 1.48500 * 109.47078 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47036 * 300.00169 * 3 2 1 6 6 H 1.48500 * 109.46989 * 60.00345 * 3 2 1 7 7 C 1.38634 * 120.00360 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00333 * 180.02562 * 7 2 1 9 9 O 1.34805 * 119.99674 * 359.97438 * 7 2 1 10 10 C 1.35780 * 116.99851 * 185.05189 * 9 7 2 11 11 C 1.38735 * 120.08796 * 354.55959 * 10 9 7 12 12 C 1.38345 * 119.97727 * 180.02562 * 11 10 9 13 13 F 1.35095 * 119.92358 * 179.72741 * 12 11 10 14 14 C 1.38546 * 120.14799 * 0.02562 * 12 11 10 15 15 C 1.38192 * 120.17887 * 0.02562 * 14 12 11 16 16 C 1.38691 * 120.01908 * 359.97438 * 15 14 12 17 17 N 1.40140 * 120.07516 * 179.97438 * 16 15 14 18 18 C 1.34785 * 119.99490 * 34.60610 * 17 16 15 19 19 O 1.21584 * 120.00113 * 355.63116 * 18 17 16 20 20 N 1.34777 * 119.99587 * 175.62318 * 18 17 16 21 21 C 1.46499 * 119.99635 * 179.97438 * 20 18 17 22 22 H 1.08993 * 109.54262 * 325.16817 * 21 20 18 23 23 C 1.54206 * 109.53774 * 205.00089 * 21 20 18 24 24 C 1.46285 * 111.98962 * 162.60988 * 23 21 20 25 25 C 1.54119 * 112.20586 * 61.40901 * 24 23 21 26 26 O 1.40324 * 108.70746 * 280.44798 * 25 24 23 27 27 C 1.43986 * 116.58244 * 95.03894 * 26 25 24 28 28 C 1.50626 * 109.53547 * 85.41690 * 21 20 18 29 29 H 0.97000 * 120.00158 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.01180 * 0.02562 * 11 10 9 31 31 H 1.08002 * 119.91045 * 179.97438 * 14 12 11 32 32 H 1.07997 * 119.99016 * 180.02562 * 15 14 12 33 33 H 0.96991 * 120.00373 * 214.60289 * 17 16 15 34 34 H 0.96997 * 119.99956 * 359.97438 * 20 18 17 35 35 H 1.09006 * 108.97699 * 283.25487 * 23 21 20 36 36 H 1.08998 * 108.97585 * 42.04382 * 23 21 20 37 37 H 1.08995 * 108.93977 * 182.11916 * 24 23 21 38 38 H 1.09005 * 108.93045 * 300.80361 * 24 23 21 39 39 H 1.09002 * 109.59254 * 40.21108 * 25 24 23 40 40 H 1.09000 * 109.59848 * 160.51920 * 25 24 23 41 41 H 1.08994 * 108.69234 * 78.90912 * 27 26 25 42 42 H 1.09002 * 108.69128 * 197.01014 * 27 26 25 43 43 H 1.08996 * 108.88277 * 330.96846 * 28 21 20 44 44 H 1.09000 * 108.88627 * 89.43487 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.7097 1.3464 0.0006 5 1 1.8909 2.3965 -1.2124 6 1 1.8910 2.3964 1.2125 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0001 9 8 1.3349 -2.3680 -0.0005 10 6 2.0704 -3.5044 0.1055 11 6 3.4562 -3.4396 0.0939 12 6 4.2034 -4.5989 0.2015 13 9 5.5527 -4.5351 0.1846 14 6 3.5709 -5.8259 0.3204 15 6 2.1909 -5.8978 0.3315 16 6 1.4348 -4.7401 0.2241 17 7 0.0353 -4.8118 0.2347 18 6 -0.5862 -5.7391 0.9900 19 8 0.0668 -6.5638 1.5997 20 7 -1.9316 -5.7520 1.0696 21 6 -2.6071 -6.7602 1.8901 22 1 -2.0518 -7.6971 1.8471 23 6 -4.0374 -6.9836 1.3588 24 6 -4.6159 -8.2335 1.8518 25 6 -4.7360 -8.2537 3.3881 26 8 -3.4795 -8.5579 3.9338 27 6 -2.6604 -7.4410 4.3273 28 6 -2.6813 -6.2816 3.3164 29 1 -0.4850 0.8400 0.0004 30 1 3.9515 -2.4844 0.0009 31 1 4.1579 -6.7285 0.4037 32 1 1.7010 -6.8558 0.4247 33 1 -0.4861 -4.1941 -0.3014 34 1 -2.4525 -5.0937 0.5836 35 1 -4.6672 -6.1523 1.6758 36 1 -4.0104 -7.0122 0.2695 37 1 -5.6077 -8.3598 1.4177 38 1 -3.9840 -9.0641 1.5368 39 1 -5.0612 -7.2754 3.7422 40 1 -5.4606 -9.0106 3.6883 41 1 -3.0129 -7.0713 5.2902 42 1 -1.6322 -7.7846 4.4408 43 1 -1.8326 -5.6267 3.5133 44 1 -3.6016 -5.7133 3.4505 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180538017.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:55 Heat of formation + Delta-G solvation = -139.333595 kcal Electronic energy + Delta-G solvation = -29431.030754 eV Core-core repulsion = 25070.044616 eV Total energy + Delta-G solvation = -4360.986138 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.82832 -41.85008 -40.78985 -39.94398 -38.13890 -36.76341 -35.54540 -34.31041 -34.24260 -32.63807 -31.06648 -29.78969 -27.59153 -27.35255 -26.28337 -24.15059 -23.34218 -22.22293 -21.77534 -21.41033 -20.14707 -19.69287 -19.16032 -18.40904 -17.80071 -17.36622 -17.12226 -16.95325 -16.58580 -16.39360 -16.12478 -15.95908 -15.78881 -15.47184 -15.28817 -15.19015 -14.92846 -14.84125 -14.36922 -14.03387 -13.96283 -13.81105 -13.45482 -13.41406 -13.02146 -12.67046 -12.57999 -12.35017 -12.19328 -12.12730 -11.80988 -11.66756 -11.65028 -11.39427 -11.31438 -11.00647 -10.83021 -10.49582 -10.10556 -9.55161 -8.73874 -8.51653 -6.17033 0.21337 0.46500 1.37024 1.42516 1.52744 1.57617 2.05506 2.13585 2.68709 2.89284 3.01530 3.16683 3.21175 3.46008 3.56137 3.83619 3.94124 3.97121 4.07553 4.16548 4.19971 4.29155 4.36754 4.52513 4.59279 4.63184 4.63697 4.79175 4.89614 4.95402 5.01933 5.06800 5.09097 5.14559 5.22633 5.24326 5.30271 5.34388 5.37083 5.53052 5.59172 5.91723 5.94809 6.08385 6.47111 6.93461 6.95649 7.47137 7.63195 8.69218 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011441 B = 0.003112 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.681561 B = 8994.946936 C =10797.219965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.008 4.008 3 Si 1.010 2.990 4 H -0.257 1.257 5 H -0.267 1.267 6 H -0.270 1.270 7 C -0.415 4.415 8 H 0.098 0.902 9 O -0.202 6.202 10 C 0.132 3.868 11 C -0.264 4.264 12 C 0.122 3.878 13 F -0.145 7.145 14 C -0.203 4.203 15 C -0.052 4.052 16 C 0.080 3.920 17 N -0.666 5.666 18 C 0.702 3.298 19 O -0.610 6.610 20 N -0.727 5.727 21 C 0.167 3.833 22 H 0.071 0.929 23 C -0.119 4.119 24 C -0.145 4.145 25 C 0.056 3.944 26 O -0.403 6.403 27 C 0.072 3.928 28 C -0.162 4.162 29 H 0.274 0.726 30 H 0.136 0.864 31 H 0.157 0.843 32 H 0.152 0.848 33 H 0.413 0.587 34 H 0.409 0.591 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.100 0.900 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.056 0.944 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.998 -11.873 2.856 15.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.208 4.208 3 Si 0.831 3.169 4 H -0.181 1.181 5 H -0.191 1.191 6 H -0.195 1.195 7 C -0.491 4.491 8 H 0.116 0.884 9 O -0.107 6.107 10 C 0.078 3.922 11 C -0.285 4.285 12 C 0.102 3.898 13 F -0.123 7.123 14 C -0.223 4.223 15 C -0.072 4.072 16 C -0.015 4.015 17 N -0.313 5.313 18 C 0.403 3.597 19 O -0.491 6.491 20 N -0.382 5.382 21 C 0.063 3.937 22 H 0.089 0.911 23 C -0.157 4.157 24 C -0.183 4.183 25 C -0.021 4.021 26 O -0.322 6.322 27 C -0.005 4.005 28 C -0.201 4.201 29 H 0.083 0.917 30 H 0.154 0.846 31 H 0.175 0.825 32 H 0.170 0.830 33 H 0.250 0.750 34 H 0.245 0.755 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.117 0.883 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.118 0.882 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.075 0.925 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.802 -12.600 3.417 16.325 hybrid contribution 0.369 1.980 -0.509 2.078 sum -9.434 -10.619 2.907 14.499 Atomic orbital electron populations 1.70117 1.07472 1.28845 1.47670 1.26348 0.96840 1.02019 0.95570 0.84629 0.78241 0.75455 0.78601 1.18111 1.19145 1.19511 1.21772 0.92498 0.81148 1.53674 0.88432 1.83894 1.34631 1.11756 1.80459 1.19122 0.90092 0.87085 0.95898 1.20920 0.93346 0.99056 1.15185 1.17448 0.76229 0.94244 1.01901 1.91425 1.29506 1.97353 1.94061 1.20873 0.94533 0.96513 1.10406 1.20863 0.92494 0.97141 0.96740 1.16880 0.82624 0.90723 1.11292 1.42214 1.04535 1.36708 1.47885 1.16017 0.82958 0.81418 0.79283 1.90842 1.65285 1.41805 1.51137 1.45151 1.03494 1.36521 1.53018 1.20602 0.93849 0.90388 0.88893 0.91103 1.20863 0.92874 0.99966 1.01960 1.21050 1.02735 0.97434 0.97079 1.22606 0.84974 1.02108 0.92384 1.87459 1.29733 1.32867 1.82131 1.22811 0.95162 0.86484 0.96007 1.22368 1.03230 0.99049 0.95449 0.91655 0.84639 0.82547 0.83039 0.75047 0.75477 0.89874 0.90303 0.88266 0.92144 0.91847 0.88187 0.91472 0.90648 0.92476 0.89696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.30 13.67 21.61 0.30 -50.01 16 2 C -0.01 -0.43 5.49 84.83 0.47 0.04 16 3 Si 1.01 40.58 29.55 68.60 2.03 42.61 16 4 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 5 H -0.27 -10.23 7.11 99.48 0.71 -9.53 16 6 H -0.27 -10.50 7.11 99.48 0.71 -9.80 16 7 C -0.42 -22.48 9.49 67.91 0.64 -21.84 16 8 H 0.10 5.00 5.20 -2.91 -0.02 4.98 16 9 O -0.20 -10.88 9.31 -22.82 -0.21 -11.10 16 10 C 0.13 6.20 6.66 22.68 0.15 6.35 16 11 C -0.26 -11.67 9.14 22.41 0.20 -11.46 16 12 C 0.12 4.75 7.29 22.37 0.16 4.91 16 13 F -0.14 -5.33 17.26 44.97 0.78 -4.55 16 14 C -0.20 -7.18 10.02 22.33 0.22 -6.96 16 15 C -0.05 -1.95 8.70 22.37 0.19 -1.76 16 16 C 0.08 3.36 6.33 38.22 0.24 3.60 16 17 N -0.67 -24.72 5.20 -316.69 -1.65 -26.37 16 18 C 0.70 24.28 8.22 179.05 1.47 25.75 16 19 O -0.61 -24.29 13.42 -3.98 -0.05 -24.34 16 20 N -0.73 -18.67 5.00 -459.55 -2.30 -20.96 16 21 C 0.17 3.76 2.15 44.63 0.10 3.86 16 22 H 0.07 1.98 7.26 -2.39 -0.02 1.96 16 23 C -0.12 -1.77 4.83 28.93 0.14 -1.63 16 24 C -0.14 -1.93 5.47 28.90 0.16 -1.77 16 25 C 0.06 0.80 6.38 72.36 0.46 1.26 16 26 O -0.40 -8.54 10.17 -143.47 -1.46 -10.00 16 27 C 0.07 1.52 6.67 72.26 0.48 2.00 16 28 C -0.16 -3.56 5.01 30.10 0.15 -3.41 16 29 H 0.27 14.02 8.31 -92.71 -0.77 13.24 16 30 H 0.14 6.07 5.64 -2.91 -0.02 6.05 16 31 H 0.16 4.48 8.06 -2.91 -0.02 4.45 16 32 H 0.15 5.54 6.19 -2.91 -0.02 5.53 16 33 H 0.41 14.66 8.58 -92.71 -0.80 13.86 16 34 H 0.41 8.64 8.63 -92.71 -0.80 7.84 16 35 H 0.08 1.00 7.60 -2.38 -0.02 0.99 16 36 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.10 0.86 8.14 -2.39 -0.02 0.85 16 38 H 0.06 1.00 8.13 -2.38 -0.02 0.98 16 39 H 0.06 0.77 6.98 -2.39 -0.02 0.75 16 40 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.06 1.59 7.82 -2.39 -0.02 1.57 16 44 H 0.08 1.50 6.84 -2.39 -0.02 1.48 16 Total: -1.00 -66.72 362.70 2.16 -64.56 By element: Atomic # 1 Polarization: 41.73 SS G_CDS: -0.52 Total: 41.21 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: 5.25 Total: -1.06 kcal Atomic # 7 Polarization: -93.69 SS G_CDS: -3.65 Total: -97.34 kcal Atomic # 8 Polarization: -43.71 SS G_CDS: -1.73 Total: -45.44 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 0.78 Total: -4.55 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Total: -66.72 2.16 -64.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180538017.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.769 kcal (2) G-P(sol) polarization free energy of solvation -66.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds