Wall clock time and date at job start Tue Mar 31 2020 20:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31574 * 1 3 3 Si 1.86801 * 119.99987 * 2 1 4 4 H 1.48496 * 109.47253 * 270.00629 * 3 2 1 5 5 H 1.48498 * 109.46800 * 30.00162 * 3 2 1 6 6 H 1.48494 * 109.46855 * 149.99905 * 3 2 1 7 7 C 1.38634 * 120.00108 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00370 * 179.97438 * 7 2 1 9 9 O 1.34811 * 119.99907 * 359.97438 * 7 2 1 10 10 C 1.35782 * 116.99897 * 174.95113 * 9 7 2 11 11 C 1.38736 * 120.08877 * 5.44543 * 10 9 7 12 12 C 1.38344 * 119.97747 * 180.26844 * 11 10 9 13 13 F 1.35109 * 119.92309 * 179.76164 * 12 11 10 14 14 C 1.38544 * 120.15232 * 359.74175 * 12 11 10 15 15 C 1.38192 * 120.17120 * 359.97438 * 14 12 11 16 16 C 1.38692 * 120.02487 * 0.02562 * 15 14 12 17 17 N 1.40134 * 120.07672 * 179.97438 * 16 15 14 18 18 C 1.34777 * 120.00285 * 325.40795 * 17 16 15 19 19 O 1.21596 * 119.99680 * 4.36671 * 18 17 16 20 20 N 1.34778 * 120.00322 * 184.37228 * 18 17 16 21 21 C 1.46500 * 119.99685 * 179.97438 * 20 18 17 22 22 H 1.08998 * 109.63595 * 34.99988 * 21 20 18 23 23 C 1.50287 * 109.63012 * 155.39824 * 21 20 18 24 24 C 1.54355 * 113.09378 * 211.60561 * 23 21 20 25 25 C 1.54351 * 111.53457 * 319.30612 * 24 23 21 26 26 O 1.39962 * 112.56456 * 319.15634 * 25 24 23 27 27 C 1.44236 * 112.36754 * 97.11791 * 26 25 24 28 28 C 1.45984 * 112.10345 * 277.40696 * 27 26 25 29 29 H 0.96996 * 120.00405 * 359.97438 * 1 2 3 30 30 H 1.08011 * 120.01276 * 0.02562 * 11 10 9 31 31 H 1.07997 * 119.90882 * 180.02562 * 14 12 11 32 32 H 1.08006 * 119.98851 * 179.97438 * 15 14 12 33 33 H 0.97005 * 120.00369 * 145.67736 * 17 16 15 34 34 H 0.96994 * 119.99764 * 359.97438 * 20 18 17 35 35 H 1.08994 * 108.78851 * 332.67958 * 23 21 20 36 36 H 1.09005 * 108.78914 * 90.88846 * 23 21 20 37 37 H 1.09001 * 109.17518 * 198.69045 * 24 23 21 38 38 H 1.09001 * 108.86631 * 79.72194 * 24 23 21 39 39 H 1.08989 * 108.86793 * 198.36184 * 25 24 23 40 40 H 1.09002 * 108.86159 * 79.94315 * 25 24 23 41 41 H 1.09001 * 108.95162 * 156.72794 * 27 26 25 42 42 H 1.09003 * 108.88325 * 38.03633 * 27 26 25 43 43 H 1.08996 * 109.02911 * 299.48520 * 28 27 26 44 44 H 1.09004 * 108.96565 * 180.60696 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0465 -1.4000 5 1 1.4472 2.6526 0.7001 6 1 3.5472 1.4401 0.7000 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0010 9 8 1.3349 -2.3681 -0.0005 10 6 2.0703 -3.5045 -0.1075 11 6 3.4561 -3.4397 -0.0969 12 6 4.2032 -4.5984 -0.2116 13 9 5.5527 -4.5336 -0.2060 14 6 3.5707 -5.8252 -0.3320 15 6 2.1907 -5.8975 -0.3374 16 6 1.4346 -4.7404 -0.2228 17 7 0.0352 -4.8125 -0.2287 18 6 -0.5889 -5.7371 -0.9851 19 8 0.0622 -6.5594 -1.6002 20 7 -1.9345 -5.7501 -1.0599 21 6 -2.6127 -6.7548 -1.8826 22 1 -2.0597 -7.6933 -1.8445 23 6 -4.0084 -6.9700 -1.3684 24 6 -4.5155 -8.4125 -1.5790 25 6 -4.1004 -8.9631 -2.9599 26 8 -4.2224 -8.0095 -3.9771 27 6 -2.9709 -7.3542 -4.2681 28 6 -2.6950 -6.2604 -3.3415 29 1 -0.4850 0.8400 0.0004 30 1 3.9516 -2.4845 -0.0029 31 1 4.1578 -6.7273 -0.4209 32 1 1.7007 -6.8554 -0.4318 33 1 -0.4846 -4.1943 0.3086 34 1 -2.4538 -5.0943 -0.5690 35 1 -4.0291 -6.7413 -0.3029 36 1 -4.6821 -6.2862 -1.8849 37 1 -5.6028 -8.4245 -1.5028 38 1 -4.0970 -9.0505 -0.8005 39 1 -4.7303 -9.8190 -3.2019 40 1 -3.0631 -9.2942 -2.9099 41 1 -3.0063 -6.9582 -5.2830 42 1 -2.1658 -8.0860 -4.2019 43 1 -3.4895 -5.5184 -3.4211 44 1 -1.7470 -5.7963 -3.6136 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180538039.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:00 Heat of formation + Delta-G solvation = -117.831516 kcal Electronic energy + Delta-G solvation = -29428.774794 eV Core-core repulsion = 25068.721057 eV Total energy + Delta-G solvation = -4360.053738 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.24756 -40.53561 -39.63261 -38.63898 -36.55463 -35.61981 -34.04269 -33.01295 -32.41978 -31.99175 -29.40966 -28.30134 -26.92852 -25.52239 -25.02475 -22.58488 -21.87490 -21.52030 -20.55304 -20.38734 -18.35291 -18.24577 -17.64217 -17.05968 -16.53483 -16.31496 -15.61587 -15.37155 -15.25767 -15.16037 -14.97928 -14.73709 -14.34241 -14.26794 -13.99016 -13.60655 -13.52075 -13.41710 -13.23620 -12.99393 -12.57747 -12.33489 -12.14113 -11.82167 -11.68373 -11.44172 -11.38969 -11.17264 -10.96861 -10.76517 -10.74383 -10.59628 -10.54036 -9.89311 -9.81143 -9.78747 -9.44269 -8.98845 -8.96334 -7.88315 -7.10114 -6.61443 -4.19112 1.85115 2.12299 2.85849 3.05564 3.07318 3.11334 3.44713 3.68648 3.83868 4.34608 4.39255 4.50647 4.59735 4.74573 4.83647 4.87772 4.96734 4.97469 5.12741 5.14045 5.29817 5.33466 5.46876 5.52095 5.57638 5.61150 5.74004 5.80285 5.88063 5.92557 5.94827 6.03455 6.13901 6.21666 6.53599 6.64001 6.69966 6.90975 6.93221 7.05591 7.07170 7.14887 7.30570 7.66195 7.82819 8.25793 8.83056 8.85986 9.45976 10.55717 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011500 B = 0.003100 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.278799 B = 9031.080419 C =10822.639343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.043 3.957 3 Si 0.942 3.058 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.392 4.392 8 H 0.094 0.906 9 O -0.169 6.169 10 C 0.158 3.842 11 C -0.259 4.259 12 C 0.128 3.872 13 F -0.152 7.152 14 C -0.228 4.228 15 C -0.050 4.050 16 C 0.078 3.922 17 N -0.664 5.664 18 C 0.705 3.295 19 O -0.586 6.586 20 N -0.742 5.742 21 C 0.169 3.831 22 H 0.088 0.912 23 C -0.128 4.128 24 C -0.140 4.140 25 C 0.055 3.945 26 O -0.372 6.372 27 C 0.063 3.937 28 C -0.166 4.166 29 H 0.271 0.729 30 H 0.143 0.857 31 H 0.122 0.878 32 H 0.143 0.857 33 H 0.411 0.589 34 H 0.398 0.602 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.052 0.948 41 H 0.090 0.910 42 H 0.057 0.943 43 H 0.072 0.928 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.689 -12.722 -2.168 15.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.162 4.162 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.468 4.468 8 H 0.112 0.888 9 O -0.072 6.072 10 C 0.101 3.899 11 C -0.280 4.280 12 C 0.108 3.892 13 F -0.131 7.131 14 C -0.249 4.249 15 C -0.071 4.071 16 C -0.017 4.017 17 N -0.311 5.311 18 C 0.406 3.594 19 O -0.465 6.465 20 N -0.397 5.397 21 C 0.064 3.936 22 H 0.106 0.894 23 C -0.167 4.167 24 C -0.179 4.179 25 C -0.023 4.023 26 O -0.291 6.291 27 C -0.013 4.013 28 C -0.205 4.205 29 H 0.081 0.919 30 H 0.160 0.840 31 H 0.140 0.860 32 H 0.160 0.840 33 H 0.246 0.754 34 H 0.232 0.768 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.071 0.929 41 H 0.108 0.892 42 H 0.075 0.925 43 H 0.091 0.909 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.711 -13.184 -2.806 15.529 hybrid contribution 0.516 1.639 0.635 1.832 sum -7.195 -11.545 -2.170 13.775 Atomic orbital electron populations 1.70007 1.05925 1.27952 1.45540 1.25272 0.95902 0.98823 0.96177 0.85686 0.79019 0.79783 0.78883 1.19764 1.20168 1.19045 1.21342 0.91973 0.80410 1.53075 0.88845 1.83918 1.33898 1.11243 1.78155 1.18794 0.89458 0.86978 0.94627 1.20844 0.93420 0.98455 1.15277 1.17462 0.75927 0.94371 1.01421 1.91412 1.30159 1.97377 1.94112 1.20482 0.94631 0.95850 1.13918 1.20670 0.92114 0.97294 0.97034 1.16634 0.81264 0.91053 1.12714 1.42195 1.05217 1.36376 1.47314 1.15887 0.81796 0.82063 0.79666 1.90861 1.64499 1.41082 1.50018 1.45207 1.04913 1.36624 1.52907 1.20375 0.92501 0.91730 0.89042 0.89396 1.21590 0.95490 0.97816 1.01760 1.22491 1.01651 0.96028 0.97713 1.22359 1.01138 0.91234 0.87585 1.87774 1.32328 1.54858 1.54092 1.21524 0.85724 0.95029 0.99050 1.21615 1.03584 0.99772 0.95530 0.91868 0.83987 0.85983 0.83976 0.75381 0.76783 0.91172 0.90953 0.91091 0.91146 0.90365 0.92918 0.89198 0.92492 0.90887 0.89842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.33 13.67 55.48 0.76 -22.58 16 2 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 3 Si 0.94 19.65 29.55 -169.99 -5.02 14.63 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 7 C -0.39 -10.30 9.49 30.88 0.29 -10.00 16 8 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 9 O -0.17 -4.38 9.31 0.00 0.00 -4.38 16 10 C 0.16 3.61 6.66 -38.94 -0.26 3.35 16 11 C -0.26 -5.64 9.14 -39.36 -0.36 -6.00 16 12 C 0.13 2.56 7.29 -39.43 -0.29 2.27 16 13 F -0.15 -2.91 17.26 2.25 0.04 -2.87 16 14 C -0.23 -4.24 10.02 -39.49 -0.40 -4.63 16 15 C -0.05 -0.97 8.70 -39.43 -0.34 -1.31 16 16 C 0.08 1.61 6.33 -83.44 -0.53 1.08 16 17 N -0.66 -12.09 5.20 -14.07 -0.07 -12.16 16 18 C 0.71 12.01 8.32 -86.92 -0.72 11.28 16 19 O -0.59 -11.39 13.42 5.28 0.07 -11.32 16 20 N -0.74 -9.66 5.00 -59.35 -0.30 -9.95 16 21 C 0.17 1.94 2.12 -68.62 -0.15 1.79 16 22 H 0.09 1.12 6.54 -51.93 -0.34 0.78 16 23 C -0.13 -1.17 5.05 -27.37 -0.14 -1.31 16 24 C -0.14 -1.12 6.25 -25.31 -0.16 -1.28 16 25 C 0.05 0.47 6.09 37.87 0.23 0.70 16 26 O -0.37 -3.97 10.35 -32.83 -0.34 -4.31 16 27 C 0.06 0.65 6.12 33.83 0.21 0.86 16 28 C -0.17 -1.92 5.14 -29.39 -0.15 -2.07 16 29 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 30 H 0.14 3.09 5.64 -52.48 -0.30 2.80 16 31 H 0.12 1.95 8.06 -52.49 -0.42 1.53 16 32 H 0.14 2.65 6.19 -52.48 -0.32 2.32 16 33 H 0.41 7.07 8.58 -40.82 -0.35 6.72 16 34 H 0.40 4.43 8.55 -40.82 -0.35 4.08 16 35 H 0.07 0.60 7.89 -51.93 -0.41 0.19 16 36 H 0.07 0.68 7.35 -51.93 -0.38 0.30 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.56 8.14 -51.94 -0.42 0.14 16 40 H 0.05 0.45 6.54 -51.93 -0.34 0.11 16 41 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.58 7.34 -51.93 -0.38 0.19 16 43 H 0.07 0.82 7.55 -51.93 -0.39 0.43 16 44 H 0.08 1.15 8.06 -51.93 -0.42 0.73 16 LS Contribution 361.67 15.07 5.45 5.45 Total: -1.00 -30.00 361.67 -7.77 -37.77 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -5.50 Total: 13.96 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -2.86 Total: -4.25 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: 0.39 Total: -44.69 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.27 Total: -20.01 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.04 Total: -2.87 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.00 -7.77 -37.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180538039.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.058 kcal (2) G-P(sol) polarization free energy of solvation -30.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds