Wall clock time and date at job start Tue Mar 31 2020 20:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31574 * 1 3 3 Si 1.86801 * 119.99987 * 2 1 4 4 H 1.48496 * 109.47253 * 270.00629 * 3 2 1 5 5 H 1.48498 * 109.46800 * 30.00162 * 3 2 1 6 6 H 1.48494 * 109.46855 * 149.99905 * 3 2 1 7 7 C 1.38634 * 120.00108 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00370 * 179.97438 * 7 2 1 9 9 O 1.34811 * 119.99907 * 359.97438 * 7 2 1 10 10 C 1.35782 * 116.99897 * 174.95113 * 9 7 2 11 11 C 1.38736 * 120.08877 * 5.44543 * 10 9 7 12 12 C 1.38344 * 119.97747 * 180.26844 * 11 10 9 13 13 F 1.35109 * 119.92309 * 179.76164 * 12 11 10 14 14 C 1.38544 * 120.15232 * 359.74175 * 12 11 10 15 15 C 1.38192 * 120.17120 * 359.97438 * 14 12 11 16 16 C 1.38692 * 120.02487 * 0.02562 * 15 14 12 17 17 N 1.40134 * 120.07672 * 179.97438 * 16 15 14 18 18 C 1.34777 * 120.00285 * 325.40795 * 17 16 15 19 19 O 1.21596 * 119.99680 * 4.36671 * 18 17 16 20 20 N 1.34778 * 120.00322 * 184.37228 * 18 17 16 21 21 C 1.46500 * 119.99685 * 179.97438 * 20 18 17 22 22 H 1.08998 * 109.63595 * 34.99988 * 21 20 18 23 23 C 1.50287 * 109.63012 * 155.39824 * 21 20 18 24 24 C 1.54355 * 113.09378 * 211.60561 * 23 21 20 25 25 C 1.54351 * 111.53457 * 319.30612 * 24 23 21 26 26 O 1.39962 * 112.56456 * 319.15634 * 25 24 23 27 27 C 1.44236 * 112.36754 * 97.11791 * 26 25 24 28 28 C 1.45984 * 112.10345 * 277.40696 * 27 26 25 29 29 H 0.96996 * 120.00405 * 359.97438 * 1 2 3 30 30 H 1.08011 * 120.01276 * 0.02562 * 11 10 9 31 31 H 1.07997 * 119.90882 * 180.02562 * 14 12 11 32 32 H 1.08006 * 119.98851 * 179.97438 * 15 14 12 33 33 H 0.97005 * 120.00369 * 145.67736 * 17 16 15 34 34 H 0.96994 * 119.99764 * 359.97438 * 20 18 17 35 35 H 1.08994 * 108.78851 * 332.67958 * 23 21 20 36 36 H 1.09005 * 108.78914 * 90.88846 * 23 21 20 37 37 H 1.09001 * 109.17518 * 198.69045 * 24 23 21 38 38 H 1.09001 * 108.86631 * 79.72194 * 24 23 21 39 39 H 1.08989 * 108.86793 * 198.36184 * 25 24 23 40 40 H 1.09002 * 108.86159 * 79.94315 * 25 24 23 41 41 H 1.09001 * 108.95162 * 156.72794 * 27 26 25 42 42 H 1.09003 * 108.88325 * 38.03633 * 27 26 25 43 43 H 1.08996 * 109.02911 * 299.48520 * 28 27 26 44 44 H 1.09004 * 108.96565 * 180.60696 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0465 -1.4000 5 1 1.4472 2.6526 0.7001 6 1 3.5472 1.4401 0.7000 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0010 9 8 1.3349 -2.3681 -0.0005 10 6 2.0703 -3.5045 -0.1075 11 6 3.4561 -3.4397 -0.0969 12 6 4.2032 -4.5984 -0.2116 13 9 5.5527 -4.5336 -0.2060 14 6 3.5707 -5.8252 -0.3320 15 6 2.1907 -5.8975 -0.3374 16 6 1.4346 -4.7404 -0.2228 17 7 0.0352 -4.8125 -0.2287 18 6 -0.5889 -5.7371 -0.9851 19 8 0.0622 -6.5594 -1.6002 20 7 -1.9345 -5.7501 -1.0599 21 6 -2.6127 -6.7548 -1.8826 22 1 -2.0597 -7.6933 -1.8445 23 6 -4.0084 -6.9700 -1.3684 24 6 -4.5155 -8.4125 -1.5790 25 6 -4.1004 -8.9631 -2.9599 26 8 -4.2224 -8.0095 -3.9771 27 6 -2.9709 -7.3542 -4.2681 28 6 -2.6950 -6.2604 -3.3415 29 1 -0.4850 0.8400 0.0004 30 1 3.9516 -2.4845 -0.0029 31 1 4.1578 -6.7273 -0.4209 32 1 1.7007 -6.8554 -0.4318 33 1 -0.4846 -4.1943 0.3086 34 1 -2.4538 -5.0943 -0.5690 35 1 -4.0291 -6.7413 -0.3029 36 1 -4.6821 -6.2862 -1.8849 37 1 -5.6028 -8.4245 -1.5028 38 1 -4.0970 -9.0505 -0.8005 39 1 -4.7303 -9.8190 -3.2019 40 1 -3.0631 -9.2942 -2.9099 41 1 -3.0063 -6.9582 -5.2830 42 1 -2.1658 -8.0860 -4.2019 43 1 -3.4895 -5.5184 -3.4211 44 1 -1.7470 -5.7963 -3.6136 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180538039.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:59 Heat of formation + Delta-G solvation = -137.108484 kcal Electronic energy + Delta-G solvation = -29429.610706 eV Core-core repulsion = 25068.721057 eV Total energy + Delta-G solvation = -4360.889650 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -49.82225 -41.86155 -40.84718 -40.02142 -38.14627 -36.75072 -35.54334 -34.30902 -33.80198 -33.06575 -31.06822 -29.82358 -27.81948 -27.36704 -25.92125 -24.13770 -23.35230 -22.55962 -21.84200 -21.33998 -20.14241 -19.71045 -19.13804 -18.40781 -17.52589 -17.31263 -17.08811 -16.96487 -16.57988 -16.48004 -16.08050 -15.98917 -15.92622 -15.50145 -15.38869 -15.23146 -15.07509 -14.84712 -14.21008 -14.03425 -13.86486 -13.77915 -13.43718 -13.34203 -13.02313 -12.68296 -12.60147 -12.34733 -12.16796 -12.13608 -12.05078 -11.66956 -11.64738 -11.31694 -11.29634 -11.00355 -10.82420 -10.58828 -10.13198 -9.54890 -8.73826 -8.51518 -6.17118 0.21609 0.46982 1.36752 1.43506 1.51591 1.57151 2.05056 2.13655 2.68957 2.92457 3.01358 3.14050 3.21472 3.46311 3.62136 3.80312 3.95074 4.05309 4.07517 4.16925 4.21069 4.31730 4.36784 4.48701 4.57997 4.62345 4.65554 4.69694 4.87737 4.94728 5.00180 5.03236 5.10882 5.14096 5.21152 5.23173 5.26200 5.31877 5.34561 5.51712 5.59085 5.90962 5.94352 6.08415 6.30445 6.93337 6.94186 7.45863 7.63128 8.69098 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011500 B = 0.003100 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.278799 B = 9031.080419 C =10822.639343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.008 4.008 3 Si 1.010 2.990 4 H -0.267 1.267 5 H -0.269 1.269 6 H -0.257 1.257 7 C -0.416 4.416 8 H 0.099 0.901 9 O -0.202 6.202 10 C 0.131 3.869 11 C -0.265 4.265 12 C 0.122 3.878 13 F -0.145 7.145 14 C -0.203 4.203 15 C -0.051 4.051 16 C 0.080 3.920 17 N -0.667 5.667 18 C 0.704 3.296 19 O -0.610 6.610 20 N -0.727 5.727 21 C 0.168 3.832 22 H 0.079 0.921 23 C -0.124 4.124 24 C -0.137 4.137 25 C 0.047 3.953 26 O -0.382 6.382 27 C 0.066 3.934 28 C -0.161 4.161 29 H 0.274 0.726 30 H 0.136 0.864 31 H 0.158 0.842 32 H 0.154 0.846 33 H 0.413 0.587 34 H 0.408 0.592 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.051 0.949 41 H 0.099 0.901 42 H 0.057 0.943 43 H 0.075 0.925 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.670 -14.067 -2.171 16.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.208 4.208 3 Si 0.830 3.170 4 H -0.192 1.192 5 H -0.194 1.194 6 H -0.180 1.180 7 C -0.492 4.492 8 H 0.116 0.884 9 O -0.108 6.108 10 C 0.077 3.923 11 C -0.286 4.286 12 C 0.102 3.898 13 F -0.124 7.124 14 C -0.223 4.223 15 C -0.071 4.071 16 C -0.016 4.016 17 N -0.313 5.313 18 C 0.405 3.595 19 O -0.490 6.490 20 N -0.381 5.381 21 C 0.064 3.936 22 H 0.097 0.903 23 C -0.162 4.162 24 C -0.175 4.175 25 C -0.031 4.031 26 O -0.301 6.301 27 C -0.011 4.011 28 C -0.200 4.200 29 H 0.083 0.917 30 H 0.153 0.847 31 H 0.175 0.825 32 H 0.171 0.829 33 H 0.249 0.751 34 H 0.245 0.755 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.113 0.887 40 H 0.070 0.930 41 H 0.117 0.883 42 H 0.075 0.925 43 H 0.094 0.906 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.713 -14.571 -2.805 16.724 hybrid contribution 0.545 1.788 0.609 1.966 sum -7.168 -12.783 -2.196 14.820 Atomic orbital electron populations 1.70114 1.07491 1.28915 1.47609 1.26355 0.96830 1.02050 0.95565 0.84691 0.77991 0.75211 0.79086 1.19242 1.19369 1.18043 1.21733 0.92499 0.81158 1.53762 0.88406 1.83896 1.34651 1.11773 1.80456 1.19146 0.90116 0.87108 0.95899 1.20922 0.93345 0.99093 1.15204 1.17460 0.76222 0.94273 1.01882 1.91430 1.29508 1.97351 1.94075 1.20879 0.94548 0.96498 1.10381 1.20869 0.92444 0.97139 0.96676 1.16889 0.82586 0.90742 1.11359 1.42223 1.04561 1.36792 1.47774 1.15996 0.82862 0.81439 0.79232 1.90830 1.65377 1.41940 1.50869 1.45195 1.03569 1.36900 1.52477 1.20530 0.93562 0.90656 0.88881 0.90311 1.21553 0.93601 0.98914 1.02178 1.22491 1.02368 0.95082 0.97580 1.22549 1.01598 0.91390 0.87546 1.87763 1.32230 1.55269 1.54839 1.21479 0.85871 0.94614 0.99128 1.21565 1.02236 1.00279 0.95893 0.91662 0.84677 0.82471 0.82854 0.75082 0.75547 0.90223 0.91000 0.89933 0.90096 0.88679 0.93031 0.88308 0.92479 0.90614 0.92415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.59 13.67 21.61 0.30 -50.30 16 2 C -0.01 -0.44 5.49 84.83 0.47 0.03 16 3 Si 1.01 40.68 29.55 68.60 2.03 42.70 16 4 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 5 H -0.27 -10.37 7.11 99.48 0.71 -9.67 16 6 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 7 C -0.42 -22.53 9.49 67.91 0.64 -21.88 16 8 H 0.10 4.99 5.20 -2.91 -0.02 4.98 16 9 O -0.20 -10.90 9.31 -22.90 -0.21 -11.11 16 10 C 0.13 6.13 6.66 22.68 0.15 6.28 16 11 C -0.26 -11.61 9.14 22.41 0.20 -11.40 16 12 C 0.12 4.68 7.29 22.37 0.16 4.85 16 13 F -0.14 -5.27 17.26 44.97 0.78 -4.49 16 14 C -0.20 -7.02 10.02 22.33 0.22 -6.79 16 15 C -0.05 -1.87 8.70 22.37 0.19 -1.67 16 16 C 0.08 3.29 6.33 38.22 0.24 3.53 16 17 N -0.67 -24.44 5.20 -316.69 -1.65 -26.09 16 18 C 0.70 23.79 8.32 179.05 1.49 25.28 16 19 O -0.61 -23.35 13.42 -4.02 -0.05 -23.40 16 20 N -0.73 -18.54 5.00 -459.95 -2.30 -20.83 16 21 C 0.17 3.71 2.12 44.55 0.09 3.80 16 22 H 0.08 1.93 6.54 -2.39 -0.02 1.91 16 23 C -0.12 -2.06 5.05 30.18 0.15 -1.90 16 24 C -0.14 -1.86 6.25 31.51 0.20 -1.67 16 25 C 0.05 0.71 6.09 72.44 0.44 1.15 16 26 O -0.38 -7.58 10.35 -140.38 -1.45 -9.04 16 27 C 0.07 1.30 6.12 69.83 0.43 1.72 16 28 C -0.16 -3.66 5.14 28.87 0.15 -3.51 16 29 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 30 H 0.14 6.02 5.64 -2.90 -0.02 6.00 16 31 H 0.16 4.36 8.06 -2.91 -0.02 4.33 16 32 H 0.15 5.40 6.19 -2.91 -0.02 5.38 16 33 H 0.41 14.59 8.58 -92.70 -0.80 13.79 16 34 H 0.41 8.83 8.55 -92.71 -0.79 8.04 16 35 H 0.08 1.18 7.89 -2.39 -0.02 1.17 16 36 H 0.07 1.22 7.35 -2.38 -0.02 1.20 16 37 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.05 0.80 6.54 -2.39 -0.02 0.78 16 41 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.06 1.12 7.34 -2.39 -0.02 1.10 16 43 H 0.08 1.66 7.55 -2.39 -0.02 1.64 16 44 H 0.06 1.62 8.06 -2.38 -0.02 1.60 16 Total: -1.00 -65.35 361.67 2.16 -63.19 By element: Atomic # 1 Polarization: 42.06 SS G_CDS: -0.51 Total: 41.55 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: 5.24 Total: -2.18 kcal Atomic # 7 Polarization: -93.57 SS G_CDS: -3.65 Total: -97.22 kcal Atomic # 8 Polarization: -41.83 SS G_CDS: -1.72 Total: -43.55 kcal Atomic # 9 Polarization: -5.27 SS G_CDS: 0.78 Total: -4.49 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.70 kcal Total: -65.35 2.16 -63.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180538039.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.921 kcal (2) G-P(sol) polarization free energy of solvation -65.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds