Wall clock time and date at job start Tue Mar 31 2020 20:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31580 * 1 3 3 Si 1.86808 * 119.99906 * 2 1 4 4 H 1.48496 * 109.46716 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47005 * 300.00092 * 3 2 1 6 6 H 1.48499 * 109.46713 * 60.00054 * 3 2 1 7 7 C 1.38628 * 119.99702 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99654 * 180.02562 * 7 2 1 9 9 O 1.34801 * 120.00515 * 359.97438 * 7 2 1 10 10 C 1.35783 * 117.00395 * 185.22793 * 9 7 2 11 11 C 1.38739 * 120.08239 * 5.79721 * 10 9 7 12 12 C 1.38349 * 119.97314 * 179.97438 * 11 10 9 13 13 F 1.35102 * 119.92141 * 179.97438 * 12 11 10 14 14 C 1.38540 * 120.15117 * 359.97438 * 12 11 10 15 15 C 1.38207 * 120.17484 * 359.75830 * 14 12 11 16 16 C 1.38689 * 120.02071 * 0.50071 * 15 14 12 17 17 N 1.40138 * 120.07630 * 179.77768 * 16 15 14 18 18 C 1.34770 * 120.00212 * 34.25696 * 17 16 15 19 19 O 1.21596 * 119.99937 * 355.41981 * 18 17 16 20 20 N 1.34774 * 120.00101 * 175.41687 * 18 17 16 21 21 C 1.46506 * 119.99931 * 179.97438 * 20 18 17 22 22 C 1.52996 * 109.46875 * 184.98803 * 21 20 18 23 23 C 1.53000 * 112.84852 * 64.93193 * 22 21 20 24 24 O 1.42905 * 109.46911 * 55.03834 * 23 22 21 25 25 C 1.53791 * 113.61378 * 196.12567 * 22 21 20 26 26 C 1.53951 * 87.01632 * 89.23109 * 25 22 21 27 27 C 1.53777 * 87.11605 * 25.36442 * 26 25 22 28 28 H 0.97000 * 119.99624 * 359.97438 * 1 2 3 29 29 H 1.07993 * 120.01667 * 359.94842 * 11 10 9 30 30 H 1.07996 * 119.91634 * 180.02562 * 14 12 11 31 31 H 1.08005 * 119.98628 * 180.25119 * 15 14 12 32 32 H 0.96997 * 119.99790 * 214.26333 * 17 16 15 33 33 H 0.96992 * 119.99978 * 359.97438 * 20 18 17 34 34 H 1.09013 * 109.46652 * 64.99405 * 21 20 18 35 35 H 1.08998 * 109.47718 * 304.99493 * 21 20 18 36 36 H 1.09000 * 109.46788 * 175.03911 * 23 22 21 37 37 H 1.08998 * 109.47035 * 295.03857 * 23 22 21 38 38 H 0.96701 * 113.99538 * 179.97438 * 24 23 22 39 39 H 1.09000 * 113.61162 * 203.75458 * 25 22 21 40 40 H 1.09001 * 113.60864 * 334.65459 * 25 22 21 41 41 H 1.09001 * 113.54183 * 270.80959 * 26 25 22 42 42 H 1.09003 * 113.74405 * 139.94503 * 26 25 22 43 43 H 1.09001 * 113.61681 * 220.08741 * 27 26 25 44 44 H 1.08999 * 113.69094 * 89.19157 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.7097 1.3464 -0.0006 5 1 1.8910 2.3965 -1.2124 6 1 1.8910 2.3964 1.2125 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0001 9 8 1.3349 -2.3680 -0.0005 10 6 2.0701 -3.5043 0.1092 11 6 3.4369 -3.4292 0.3353 12 6 4.1837 -4.5884 0.4472 13 9 5.5146 -4.5141 0.6669 14 6 3.5698 -5.8253 0.3345 15 6 2.2078 -5.9074 0.1148 16 6 1.4531 -4.7499 -0.0039 17 7 0.0727 -4.8317 -0.2314 18 6 -0.6414 -5.8371 0.3122 19 8 -0.0767 -6.7190 0.9303 20 7 -1.9814 -5.8652 0.1708 21 6 -2.7576 -6.9584 0.7613 22 6 -4.2255 -6.8204 0.3525 23 6 -4.4415 -6.9905 -1.1526 24 8 -3.8928 -8.2409 -1.5742 25 6 -5.1858 -7.6601 1.2115 26 6 -5.2800 -6.4443 2.1512 27 6 -4.9133 -5.5752 0.9367 28 1 -0.4849 0.8401 0.0004 29 1 3.9177 -2.4663 0.4235 30 1 4.1563 -6.7278 0.4229 31 1 1.7317 -6.8732 0.0315 32 1 -0.3688 -4.1648 -0.7802 33 1 -2.4319 -5.1615 -0.3219 34 1 -2.6774 -6.9155 1.8476 35 1 -2.3696 -7.9129 0.4058 36 1 -5.5092 -6.9701 -1.3709 37 1 -3.9462 -6.1784 -1.6848 38 1 -3.9944 -8.4161 -2.5198 39 1 -6.1241 -7.8989 0.7108 40 1 -4.7150 -8.5307 1.6682 41 1 -4.5230 -6.4405 2.9354 42 1 -6.2847 -6.2608 2.5320 43 1 -4.2231 -4.7651 1.1720 44 1 -5.7762 -5.2421 0.3600 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183895057.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:56 Heat of formation + Delta-G solvation = -124.515202 kcal Electronic energy + Delta-G solvation = -29261.258996 eV Core-core repulsion = 24900.915432 eV Total energy + Delta-G solvation = -4360.343564 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.82325 -41.83555 -40.92411 -40.08497 -38.07637 -37.03871 -35.55488 -35.35596 -34.30264 -31.12204 -30.40954 -29.29071 -27.44117 -27.10624 -26.50379 -24.13363 -23.37115 -22.96567 -21.90844 -20.19275 -19.93698 -19.59457 -18.88515 -18.23986 -18.16646 -17.24184 -16.99003 -16.78211 -16.62572 -16.41049 -16.15337 -15.97996 -15.82166 -15.44523 -15.24775 -15.22585 -15.03717 -14.81770 -14.18973 -13.98953 -13.86543 -13.66274 -13.42773 -13.22457 -13.02104 -12.84982 -12.58293 -12.40150 -12.32690 -12.12124 -11.68051 -11.49296 -11.35169 -11.23146 -11.22138 -11.02139 -10.82784 -10.75019 -10.12349 -9.54275 -8.73936 -8.50920 -6.16721 0.21570 0.46885 1.37692 1.43248 1.53545 1.58398 2.04730 2.14415 2.69112 3.03671 3.07614 3.19132 3.32969 3.45730 3.54645 3.62498 3.87864 3.95665 3.97015 4.17122 4.17999 4.37353 4.46330 4.56060 4.59515 4.63936 4.77733 4.83982 4.87060 4.93334 4.96201 5.02873 5.10098 5.14542 5.22751 5.30261 5.31390 5.34579 5.46119 5.50179 5.57793 5.90387 5.94437 6.08003 6.92113 6.93993 6.95400 7.45597 7.63701 8.69907 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010216 B = 0.003268 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2740.044733 B = 8565.094207 C =10653.671592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.008 4.008 3 Si 1.011 2.989 4 H -0.257 1.257 5 H -0.266 1.266 6 H -0.270 1.270 7 C -0.415 4.415 8 H 0.099 0.901 9 O -0.202 6.202 10 C 0.132 3.868 11 C -0.263 4.263 12 C 0.122 3.878 13 F -0.144 7.144 14 C -0.203 4.203 15 C -0.052 4.052 16 C 0.079 3.921 17 N -0.665 5.665 18 C 0.703 3.297 19 O -0.614 6.614 20 N -0.724 5.724 21 C 0.172 3.828 22 C -0.097 4.097 23 C 0.091 3.909 24 O -0.588 6.588 25 C -0.112 4.112 26 C -0.142 4.142 27 C -0.129 4.129 28 H 0.274 0.726 29 H 0.136 0.864 30 H 0.157 0.843 31 H 0.151 0.849 32 H 0.413 0.587 33 H 0.406 0.594 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.046 0.954 38 H 0.394 0.606 39 H 0.102 0.898 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.060 0.940 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.186 -11.128 -2.833 16.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.208 4.208 3 Si 0.831 3.169 4 H -0.181 1.181 5 H -0.191 1.191 6 H -0.196 1.196 7 C -0.491 4.491 8 H 0.116 0.884 9 O -0.107 6.107 10 C 0.078 3.922 11 C -0.284 4.284 12 C 0.102 3.898 13 F -0.123 7.123 14 C -0.223 4.223 15 C -0.073 4.073 16 C -0.016 4.016 17 N -0.312 5.312 18 C 0.403 3.597 19 O -0.495 6.495 20 N -0.379 5.379 21 C 0.048 3.952 22 C -0.097 4.097 23 C 0.014 3.986 24 O -0.396 6.396 25 C -0.150 4.150 26 C -0.180 4.180 27 C -0.166 4.166 28 H 0.084 0.916 29 H 0.154 0.846 30 H 0.175 0.825 31 H 0.169 0.831 32 H 0.249 0.751 33 H 0.242 0.758 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.243 0.757 39 H 0.120 0.880 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.079 0.921 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.991 -11.782 -1.652 16.197 hybrid contribution 0.276 1.676 -0.870 1.909 sum -10.715 -10.106 -2.522 14.944 Atomic orbital electron populations 1.70132 1.07513 1.28854 1.47652 1.26361 0.96825 1.02047 0.95538 0.84622 0.78251 0.75414 0.78595 1.18064 1.19110 1.19557 1.21777 0.92496 0.81168 1.53641 0.88412 1.83919 1.34552 1.11779 1.80437 1.19130 0.90472 0.87124 0.95496 1.20919 0.93863 0.98978 1.14620 1.17444 0.76921 0.94146 1.01297 1.91427 1.31213 1.97335 1.92343 1.20871 0.94916 0.96315 1.10203 1.20875 0.92178 0.97309 0.96942 1.16896 0.83125 0.90756 1.10859 1.42170 1.06023 1.29738 1.53277 1.15983 0.82370 0.81951 0.79359 1.90836 1.70538 1.39900 1.48230 1.44885 1.03770 1.29543 1.59703 1.20821 0.88906 0.88794 0.96636 1.22111 0.92992 0.99716 0.94925 1.22158 0.97882 0.85655 0.92947 1.86464 1.83261 1.38661 1.31178 1.22894 0.98859 0.96717 0.96544 1.22871 1.02463 0.96152 0.96474 1.23000 1.00688 0.95289 0.97618 0.91649 0.84591 0.82518 0.83105 0.75080 0.75781 0.92867 0.92028 0.91179 0.93616 0.75688 0.87979 0.91713 0.91131 0.89710 0.92102 0.87621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.53 13.67 21.61 0.30 -50.24 16 2 C -0.01 -0.43 5.49 84.82 0.47 0.04 16 3 Si 1.01 40.58 29.55 68.60 2.03 42.61 16 4 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 5 H -0.27 -10.19 7.11 99.48 0.71 -9.49 16 6 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 7 C -0.42 -22.52 9.44 67.91 0.64 -21.87 16 8 H 0.10 5.01 5.29 -2.91 -0.02 4.99 16 9 O -0.20 -10.94 9.31 -22.81 -0.21 -11.15 16 10 C 0.13 6.26 6.66 22.68 0.15 6.41 16 11 C -0.26 -11.71 9.11 22.42 0.20 -11.51 16 12 C 0.12 4.80 7.29 22.37 0.16 4.97 16 13 F -0.14 -5.36 17.26 44.97 0.78 -4.58 16 14 C -0.20 -7.29 10.02 22.33 0.22 -7.06 16 15 C -0.05 -2.02 8.70 22.37 0.19 -1.83 16 16 C 0.08 3.38 6.34 38.22 0.24 3.62 16 17 N -0.67 -25.39 5.20 -316.71 -1.65 -27.04 16 18 C 0.70 25.50 8.41 179.06 1.51 27.01 16 19 O -0.61 -25.70 13.73 -4.02 -0.06 -25.76 16 20 N -0.72 -20.04 5.18 -478.52 -2.48 -22.52 16 21 C 0.17 4.32 4.78 86.38 0.41 4.73 16 22 C -0.10 -1.70 0.66 -51.65 -0.03 -1.74 16 23 C 0.09 1.37 6.23 71.98 0.45 1.82 16 24 O -0.59 -10.26 12.97 -148.98 -1.93 -12.19 16 25 C -0.11 -1.69 7.24 31.18 0.23 -1.47 16 26 C -0.14 -2.17 7.74 31.18 0.24 -1.93 16 27 C -0.13 -2.02 7.02 31.12 0.22 -1.81 16 28 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 29 H 0.14 6.13 5.71 -2.91 -0.02 6.11 16 30 H 0.16 4.56 8.06 -2.91 -0.02 4.54 16 31 H 0.15 5.70 6.16 -2.91 -0.02 5.68 16 32 H 0.41 15.03 8.58 -92.71 -0.80 14.23 16 33 H 0.41 9.54 7.78 -92.71 -0.72 8.82 16 34 H 0.05 1.45 7.32 -2.38 -0.02 1.43 16 35 H 0.06 1.78 7.65 -2.39 -0.02 1.77 16 36 H 0.07 0.75 8.08 -2.39 -0.02 0.73 16 37 H 0.05 0.68 7.69 -2.39 -0.02 0.66 16 38 H 0.39 3.57 9.12 -74.06 -0.68 2.89 16 39 H 0.10 1.20 8.05 -2.39 -0.02 1.18 16 40 H 0.06 1.09 8.10 -2.39 -0.02 1.07 16 41 H 0.07 1.26 7.61 -2.39 -0.02 1.24 16 42 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.06 1.17 7.84 -2.39 -0.02 1.15 16 44 H 0.11 1.25 8.10 -2.39 -0.02 1.23 16 Total: -1.00 -68.83 370.93 0.97 -67.85 By element: Atomic # 1 Polarization: 44.73 SS G_CDS: -1.10 Total: 43.62 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 5.31 Total: -0.61 kcal Atomic # 7 Polarization: -95.96 SS G_CDS: -3.83 Total: -99.79 kcal Atomic # 8 Polarization: -46.90 SS G_CDS: -2.20 Total: -49.10 kcal Atomic # 9 Polarization: -5.36 SS G_CDS: 0.78 Total: -4.58 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Total: -68.83 0.97 -67.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183895057.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.663 kcal (2) G-P(sol) polarization free energy of solvation -68.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds