Wall clock time and date at job start Tue Mar 31 2020 21:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31518 * 119.65504 * 2 1 4 4 C 1.32766 * 121.77057 * 179.97438 * 3 2 1 5 5 C 1.48224 * 119.57252 * 180.02562 * 4 3 2 6 6 C 1.39430 * 120.12921 * 179.72602 * 5 4 3 7 7 C 1.37993 * 119.86857 * 179.74258 * 6 5 4 8 8 C 1.38350 * 120.12725 * 0.51384 * 7 6 5 9 9 C 1.38337 * 120.26055 * 359.76592 * 8 7 6 10 10 C 1.37988 * 120.13075 * 359.97329 * 9 8 7 11 11 C 1.39509 * 120.85832 * 359.97438 * 4 3 2 12 12 C 1.38047 * 119.21504 * 359.72473 * 11 4 3 13 13 C 1.39633 * 119.65396 * 179.97438 * 2 1 3 14 14 C 1.47705 * 120.45865 * 0.02769 * 13 2 1 15 15 O 1.21568 * 119.99731 * 328.22382 * 14 13 2 16 16 N 1.34772 * 120.00127 * 148.22201 * 14 13 2 17 17 C 1.47582 * 134.49481 * 175.03017 * 16 14 13 18 18 C 1.53948 * 86.11824 * 155.36071 * 17 16 14 19 19 O 1.42901 * 113.74059 * 269.15712 * 18 17 16 20 20 C 1.50699 * 113.74331 * 137.95516 * 18 17 16 21 21 H 1.08001 * 120.00144 * 1.92406 * 20 18 17 22 22 C 1.37876 * 119.99922 * 181.92726 * 20 18 17 23 23 N 1.31509 * 119.99741 * 179.97438 * 22 20 18 24 24 Si 1.86795 * 120.00069 * 359.97438 * 22 20 18 25 25 H 1.48500 * 109.47335 * 270.00010 * 24 22 20 26 26 H 1.48504 * 109.47265 * 30.00512 * 24 22 20 27 27 H 1.48506 * 109.47111 * 150.00117 * 24 22 20 28 28 C 1.47821 * 134.45630 * 354.90070 * 16 14 13 29 29 H 1.08997 * 109.47266 * 264.31385 * 1 2 3 30 30 H 1.09000 * 109.47204 * 24.31506 * 1 2 3 31 31 H 1.09000 * 109.47184 * 144.31251 * 1 2 3 32 32 H 1.07995 * 120.06911 * 0.02562 * 6 5 4 33 33 H 1.08002 * 119.94334 * 180.25264 * 7 6 5 34 34 H 1.07996 * 119.86579 * 179.73945 * 8 7 6 35 35 H 1.08007 * 119.93216 * 180.02562 * 9 8 7 36 36 H 1.08000 * 120.06706 * 180.02562 * 10 9 8 37 37 H 1.08006 * 120.39686 * 179.97438 * 11 4 3 38 38 H 1.07997 * 120.81088 * 180.27169 * 12 11 4 39 39 H 1.09003 * 113.76655 * 41.05929 * 17 16 14 40 40 H 1.08999 * 113.87277 * 269.67193 * 17 16 14 41 41 H 0.96701 * 114.00142 * 178.07474 * 19 18 17 42 42 H 0.97002 * 120.00440 * 179.97438 * 23 22 20 43 43 H 1.08994 * 113.76685 * 90.37365 * 28 16 14 44 44 H 1.08999 * 113.83296 * 318.91654 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1577 1.1429 0.0000 4 6 3.4845 1.1919 0.0005 5 6 4.1679 2.5072 0.0011 6 6 5.5607 2.5722 0.0074 7 6 6.1914 3.7996 0.0025 8 6 5.4445 4.9641 0.0021 9 6 4.0623 4.9058 0.0017 10 6 3.4206 3.6843 0.0011 11 6 4.2437 0.0216 0.0016 12 6 3.5997 -1.1994 0.0079 13 6 2.1978 -1.2135 0.0005 14 6 1.4618 -2.4941 0.0005 15 8 0.3827 -2.5749 0.5545 16 7 1.9865 -3.5729 -0.6137 17 6 1.5916 -4.9900 -0.7316 18 6 2.4131 -5.0020 -2.0335 19 8 1.6519 -4.6725 -3.1972 20 6 3.2505 -6.2422 -2.2111 21 1 3.2104 -7.0310 -1.4745 22 6 4.0681 -6.3699 -3.3140 23 7 4.7993 -7.4520 -3.4687 24 14 4.1371 -5.0060 -4.5884 25 1 3.1090 -5.2507 -5.6316 26 1 3.8744 -3.7005 -3.9310 27 1 5.4830 -4.9823 -5.2157 28 6 3.1877 -3.8105 -1.4418 29 1 -0.3633 -0.1018 1.0226 30 1 -0.3633 0.9365 -0.4231 31 1 -0.3633 -0.8347 -0.5995 32 1 6.1448 1.6638 0.0114 33 1 7.2702 3.8513 0.0032 34 1 5.9425 5.9224 0.0025 35 1 3.4845 5.8183 0.0009 36 1 2.3415 3.6400 0.0004 37 1 5.3227 0.0701 0.0016 38 1 4.1620 -2.1214 0.0133 39 1 0.5225 -5.1367 -0.8853 40 1 2.0003 -5.6284 0.0516 41 1 2.1704 -4.6502 -4.0131 42 1 5.3742 -7.5421 -4.2447 43 1 4.0673 -4.1002 -0.8669 44 1 3.3906 -3.0174 -2.1614 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186810226.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:24 Heat of formation + Delta-G solvation = 30.312374 kcal Electronic energy + Delta-G solvation = -28357.589039 eV Core-core repulsion = 24434.728527 eV Total energy + Delta-G solvation = -3922.860512 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.87139 -39.73035 -38.88387 -37.55337 -34.61675 -33.55257 -33.05886 -32.61608 -31.21444 -30.40246 -29.18716 -27.48664 -25.84651 -25.52900 -24.45493 -23.26509 -21.83195 -21.49359 -20.38742 -19.08138 -17.66644 -17.60287 -17.03642 -16.67302 -16.28704 -16.02780 -15.67027 -15.07928 -14.79666 -14.53059 -14.42704 -14.16740 -13.76948 -13.68803 -13.54382 -13.30990 -13.13918 -13.00061 -12.86396 -12.49763 -12.32800 -12.29290 -12.14760 -11.93934 -11.53037 -11.34680 -11.33794 -11.02209 -10.68618 -10.20543 -10.11532 -9.96503 -9.64012 -9.61903 -9.37156 -9.21669 -9.08236 -8.77140 -8.41972 -8.10590 -6.48956 -4.55776 0.18965 1.13165 1.14689 1.41385 2.93518 2.95484 2.99398 3.08874 3.21245 3.50012 3.83946 3.91397 3.96564 4.36253 4.52396 4.61777 4.67210 4.69441 4.74646 4.78888 4.91037 5.01322 5.11627 5.25151 5.32537 5.39920 5.48336 5.60445 5.66091 5.76385 5.77913 5.88077 5.92325 5.97359 6.00463 6.10100 6.11236 6.18754 6.22929 6.26604 6.33189 6.34527 6.50427 6.56873 6.68275 7.12493 7.79082 7.95965 8.12641 8.41934 8.46877 8.55086 9.08262 10.63059 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.013661 B = 0.003110 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.174403 B = 9001.671649 C =10355.935205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.188 3.812 3 N -0.483 5.483 4 C 0.184 3.816 5 C -0.050 4.050 6 C -0.098 4.098 7 C -0.125 4.125 8 C -0.110 4.110 9 C -0.128 4.128 10 C -0.078 4.078 11 C -0.177 4.177 12 C -0.035 4.035 13 C -0.175 4.175 14 C 0.578 3.422 15 O -0.545 6.545 16 N -0.627 5.627 17 C 0.129 3.871 18 C 0.196 3.804 19 O -0.553 6.553 20 C -0.537 4.537 21 H 0.092 0.908 22 C 0.081 3.919 23 N -0.874 5.874 24 Si 0.855 3.145 25 H -0.266 1.266 26 H -0.256 1.256 27 H -0.282 1.282 28 C 0.058 3.942 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.136 0.864 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.079 0.921 40 H 0.097 0.903 41 H 0.353 0.647 42 H 0.271 0.729 43 H 0.096 0.904 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.846 20.483 5.657 21.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.049 3.951 3 N -0.193 5.193 4 C 0.048 3.952 5 C -0.051 4.051 6 C -0.117 4.117 7 C -0.143 4.143 8 C -0.129 4.129 9 C -0.145 4.145 10 C -0.096 4.096 11 C -0.197 4.197 12 C -0.061 4.061 13 C -0.180 4.180 14 C 0.367 3.633 15 O -0.425 6.425 16 N -0.360 5.360 17 C 0.008 3.992 18 C 0.155 3.845 19 O -0.363 6.363 20 C -0.575 4.575 21 H 0.110 0.890 22 C -0.124 4.124 23 N -0.510 5.510 24 Si 0.683 3.317 25 H -0.192 1.192 26 H -0.182 1.182 27 H -0.208 1.208 28 C -0.064 4.064 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.146 0.854 33 H 0.144 0.856 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.154 0.846 37 H 0.160 0.840 38 H 0.163 0.837 39 H 0.097 0.903 40 H 0.115 0.885 41 H 0.204 0.796 42 H 0.082 0.918 43 H 0.114 0.886 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.376 21.266 6.352 22.237 hybrid contribution 1.398 -0.205 -1.185 1.844 sum 2.774 21.061 5.166 21.862 Atomic orbital electron populations 1.20801 0.87516 1.03197 1.04124 1.21350 0.97343 0.86245 0.90206 1.67496 1.08572 1.28764 1.14437 1.19865 0.89147 0.92400 0.93763 1.18541 0.92722 0.91049 1.02741 1.21290 0.93213 0.98456 0.98779 1.21073 1.00065 0.92156 1.00987 1.21298 0.94196 0.98441 0.98931 1.21169 0.94677 0.97773 1.00931 1.21383 1.00926 0.91118 0.96205 1.21970 1.01478 0.92095 1.04155 1.21861 0.93228 0.98946 0.92044 1.20911 0.94527 0.95144 1.07377 1.17551 0.85050 0.82486 0.78247 1.90739 1.21126 1.84588 1.46029 1.50086 1.26978 1.08900 1.50043 1.23324 1.01008 0.78666 0.96221 1.20539 0.88734 0.91603 0.83581 1.86473 1.39882 1.92998 1.16968 1.21213 1.23634 1.02726 1.09908 0.88978 1.24995 0.94617 0.95386 0.97429 1.69848 1.25694 1.26289 1.29133 0.87392 0.78383 0.83014 0.82878 1.19217 1.18154 1.20847 1.24791 0.89644 0.99509 0.92491 0.89471 0.91002 0.89632 0.85373 0.85604 0.85929 0.85702 0.84628 0.84029 0.83721 0.90301 0.88465 0.79561 0.91819 0.88575 0.91121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.43 8.76 36.00 0.32 -1.11 16 2 C 0.19 2.99 6.81 -82.21 -0.56 2.43 16 3 N -0.48 -7.24 9.31 -5.73 -0.05 -7.29 16 4 C 0.18 2.50 6.73 -82.89 -0.56 1.94 16 5 C -0.05 -0.58 5.88 -104.91 -0.62 -1.19 16 6 C -0.10 -0.94 9.42 -39.23 -0.37 -1.31 16 7 C -0.12 -1.01 10.03 -39.63 -0.40 -1.41 16 8 C -0.11 -0.86 10.04 -39.50 -0.40 -1.26 16 9 C -0.13 -1.11 10.03 -39.64 -0.40 -1.50 16 10 C -0.08 -0.84 9.57 -39.23 -0.38 -1.21 16 11 C -0.18 -2.23 9.44 -39.18 -0.37 -2.60 16 12 C -0.04 -0.50 9.00 -38.92 -0.35 -0.85 16 13 C -0.17 -2.91 5.77 -104.78 -0.60 -3.51 16 14 C 0.58 11.04 7.28 -12.40 -0.09 10.95 16 15 O -0.54 -11.41 15.31 5.31 0.08 -11.33 16 16 N -0.63 -12.11 3.58 -179.26 -0.64 -12.75 16 17 C 0.13 2.57 8.23 -2.96 -0.02 2.55 16 18 C 0.20 4.30 1.06 -90.84 -0.10 4.20 16 19 O -0.55 -12.69 13.35 -35.23 -0.47 -13.16 16 20 C -0.54 -13.33 9.19 -34.44 -0.32 -13.64 16 21 H 0.09 2.45 8.06 -52.49 -0.42 2.02 16 22 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 23 N -0.87 -23.80 13.96 55.43 0.77 -23.03 16 24 Si 0.86 18.31 24.31 -169.99 -4.13 14.18 16 25 H -0.27 -5.61 7.05 56.52 0.40 -5.21 16 26 H -0.26 -5.13 5.16 56.52 0.29 -4.84 16 27 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 28 C 0.06 1.11 5.07 -2.83 -0.01 1.10 16 29 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.09 1.36 6.61 -51.93 -0.34 1.01 16 32 H 0.13 0.99 6.17 -52.49 -0.32 0.67 16 33 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 34 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 35 H 0.12 0.81 8.06 -52.48 -0.42 0.38 16 36 H 0.14 1.48 7.53 -52.49 -0.40 1.09 16 37 H 0.14 1.33 6.17 -52.48 -0.32 1.00 16 38 H 0.15 1.91 6.30 -52.49 -0.33 1.58 16 39 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 40 H 0.10 1.78 8.09 -51.93 -0.42 1.36 16 41 H 0.35 7.73 3.57 45.56 0.16 7.89 16 42 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 43 H 0.10 1.68 7.77 -51.93 -0.40 1.27 16 44 H 0.07 1.32 6.78 -51.93 -0.35 0.97 16 LS Contribution 360.87 15.07 5.44 5.44 Total: -1.00 -30.08 360.87 -9.26 -39.34 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -4.94 Total: 13.08 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -5.32 Total: -4.47 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 0.08 Total: -43.07 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.39 Total: -24.49 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -4.13 Total: 14.18 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.08 -9.26 -39.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186810226.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.650 kcal (2) G-P(sol) polarization free energy of solvation -30.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds