Wall clock time and date at job start Tue Mar 31 2020 21:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31518 * 119.65504 * 2 1 4 4 C 1.32766 * 121.77057 * 179.97438 * 3 2 1 5 5 C 1.48224 * 119.57252 * 180.02562 * 4 3 2 6 6 C 1.39430 * 120.12921 * 179.72602 * 5 4 3 7 7 C 1.37993 * 119.86857 * 179.74258 * 6 5 4 8 8 C 1.38350 * 120.12725 * 0.51384 * 7 6 5 9 9 C 1.38337 * 120.26055 * 359.76592 * 8 7 6 10 10 C 1.37988 * 120.13075 * 359.97329 * 9 8 7 11 11 C 1.39509 * 120.85832 * 359.97438 * 4 3 2 12 12 C 1.38047 * 119.21504 * 359.72473 * 11 4 3 13 13 C 1.39633 * 119.65396 * 179.97438 * 2 1 3 14 14 C 1.47705 * 120.45865 * 0.02769 * 13 2 1 15 15 O 1.21568 * 119.99731 * 328.22382 * 14 13 2 16 16 N 1.34772 * 120.00127 * 148.22201 * 14 13 2 17 17 C 1.47582 * 134.49481 * 175.03017 * 16 14 13 18 18 C 1.53948 * 86.11824 * 155.36071 * 17 16 14 19 19 O 1.42901 * 113.74059 * 269.15712 * 18 17 16 20 20 C 1.50699 * 113.74331 * 137.95516 * 18 17 16 21 21 H 1.08001 * 120.00144 * 1.92406 * 20 18 17 22 22 C 1.37876 * 119.99922 * 181.92726 * 20 18 17 23 23 N 1.31509 * 119.99741 * 179.97438 * 22 20 18 24 24 Si 1.86795 * 120.00069 * 359.97438 * 22 20 18 25 25 H 1.48500 * 109.47335 * 270.00010 * 24 22 20 26 26 H 1.48504 * 109.47265 * 30.00512 * 24 22 20 27 27 H 1.48506 * 109.47111 * 150.00117 * 24 22 20 28 28 C 1.47821 * 134.45630 * 354.90070 * 16 14 13 29 29 H 1.08997 * 109.47266 * 264.31385 * 1 2 3 30 30 H 1.09000 * 109.47204 * 24.31506 * 1 2 3 31 31 H 1.09000 * 109.47184 * 144.31251 * 1 2 3 32 32 H 1.07995 * 120.06911 * 0.02562 * 6 5 4 33 33 H 1.08002 * 119.94334 * 180.25264 * 7 6 5 34 34 H 1.07996 * 119.86579 * 179.73945 * 8 7 6 35 35 H 1.08007 * 119.93216 * 180.02562 * 9 8 7 36 36 H 1.08000 * 120.06706 * 180.02562 * 10 9 8 37 37 H 1.08006 * 120.39686 * 179.97438 * 11 4 3 38 38 H 1.07997 * 120.81088 * 180.27169 * 12 11 4 39 39 H 1.09003 * 113.76655 * 41.05929 * 17 16 14 40 40 H 1.08999 * 113.87277 * 269.67193 * 17 16 14 41 41 H 0.96701 * 114.00142 * 178.07474 * 19 18 17 42 42 H 0.97002 * 120.00440 * 179.97438 * 23 22 20 43 43 H 1.08994 * 113.76685 * 90.37365 * 28 16 14 44 44 H 1.08999 * 113.83296 * 318.91654 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1577 1.1429 0.0000 4 6 3.4845 1.1919 0.0005 5 6 4.1679 2.5072 0.0011 6 6 5.5607 2.5722 0.0074 7 6 6.1914 3.7996 0.0025 8 6 5.4445 4.9641 0.0021 9 6 4.0623 4.9058 0.0017 10 6 3.4206 3.6843 0.0011 11 6 4.2437 0.0216 0.0016 12 6 3.5997 -1.1994 0.0079 13 6 2.1978 -1.2135 0.0005 14 6 1.4618 -2.4941 0.0005 15 8 0.3827 -2.5749 0.5545 16 7 1.9865 -3.5729 -0.6137 17 6 1.5916 -4.9900 -0.7316 18 6 2.4131 -5.0020 -2.0335 19 8 1.6519 -4.6725 -3.1972 20 6 3.2505 -6.2422 -2.2111 21 1 3.2104 -7.0310 -1.4745 22 6 4.0681 -6.3699 -3.3140 23 7 4.7993 -7.4520 -3.4687 24 14 4.1371 -5.0060 -4.5884 25 1 3.1090 -5.2507 -5.6316 26 1 3.8744 -3.7005 -3.9310 27 1 5.4830 -4.9823 -5.2157 28 6 3.1877 -3.8105 -1.4418 29 1 -0.3633 -0.1018 1.0226 30 1 -0.3633 0.9365 -0.4231 31 1 -0.3633 -0.8347 -0.5995 32 1 6.1448 1.6638 0.0114 33 1 7.2702 3.8513 0.0032 34 1 5.9425 5.9224 0.0025 35 1 3.4845 5.8183 0.0009 36 1 2.3415 3.6400 0.0004 37 1 5.3227 0.0701 0.0016 38 1 4.1620 -2.1214 0.0133 39 1 0.5225 -5.1367 -0.8853 40 1 2.0003 -5.6284 0.0516 41 1 2.1704 -4.6502 -4.0131 42 1 5.3742 -7.5421 -4.2447 43 1 4.0673 -4.1002 -0.8669 44 1 3.3906 -3.0174 -2.1614 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186810226.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:23 Heat of formation + Delta-G solvation = 10.907796 kcal Electronic energy + Delta-G solvation = -28358.430485 eV Core-core repulsion = 24434.728527 eV Total energy + Delta-G solvation = -3923.701957 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.06480 -41.06672 -39.81574 -38.99918 -36.31731 -34.56801 -34.54584 -34.16110 -31.89752 -31.32876 -30.69665 -28.75845 -27.36004 -27.14802 -25.58589 -24.10803 -22.70541 -22.54908 -21.85147 -20.55471 -19.42366 -18.57598 -18.40768 -18.11858 -17.66780 -17.14578 -16.77780 -16.47965 -15.75592 -15.63343 -15.51737 -15.38056 -15.23588 -15.02991 -14.84753 -14.50585 -14.27930 -14.20471 -14.05788 -13.89583 -13.84219 -13.36007 -13.26966 -13.13349 -12.99740 -12.69189 -12.46830 -12.20634 -12.00650 -11.96038 -11.51471 -11.16886 -11.11837 -10.97836 -10.73859 -10.58619 -10.44563 -9.87310 -9.73003 -9.26316 -8.43335 -6.55631 -0.80465 0.06596 0.48881 0.55040 1.24888 1.26276 1.38630 1.66974 1.73881 2.16340 2.53035 2.75827 2.85195 3.02827 3.16043 3.37144 3.43309 3.59605 3.79009 3.84957 3.98418 4.10796 4.14472 4.27718 4.32043 4.38452 4.42468 4.50245 4.56330 4.60000 4.63692 4.64525 4.64833 4.75134 4.84860 4.88366 4.95397 4.99427 5.06765 5.16865 5.27565 5.39301 5.56540 5.57996 5.61452 6.03681 6.03831 6.52671 6.59432 6.67700 6.73659 6.96304 7.12745 8.71819 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.013661 B = 0.003110 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.174403 B = 9001.671649 C =10355.935205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.178 3.822 3 N -0.496 5.496 4 C 0.184 3.816 5 C -0.078 4.078 6 C -0.100 4.100 7 C -0.127 4.127 8 C -0.105 4.105 9 C -0.133 4.133 10 C -0.094 4.094 11 C -0.171 4.171 12 C -0.034 4.034 13 C -0.202 4.202 14 C 0.578 3.422 15 O -0.571 6.571 16 N -0.628 5.628 17 C 0.128 3.872 18 C 0.184 3.816 19 O -0.562 6.562 20 C -0.540 4.540 21 H 0.060 0.940 22 C 0.032 3.968 23 N -0.921 5.921 24 Si 0.912 3.088 25 H -0.260 1.260 26 H -0.232 1.232 27 H -0.280 1.280 28 C 0.074 3.926 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.146 0.854 33 H 0.154 0.846 34 H 0.151 0.849 35 H 0.144 0.856 36 H 0.124 0.876 37 H 0.178 0.822 38 H 0.156 0.844 39 H 0.072 0.928 40 H 0.109 0.891 41 H 0.356 0.644 42 H 0.274 0.726 43 H 0.114 0.886 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.012 23.902 5.413 25.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.038 3.962 3 N -0.205 5.205 4 C 0.048 3.952 5 C -0.079 4.079 6 C -0.119 4.119 7 C -0.144 4.144 8 C -0.123 4.123 9 C -0.151 4.151 10 C -0.113 4.113 11 C -0.191 4.191 12 C -0.060 4.060 13 C -0.207 4.207 14 C 0.369 3.631 15 O -0.453 6.453 16 N -0.361 5.361 17 C 0.006 3.994 18 C 0.144 3.856 19 O -0.374 6.374 20 C -0.578 4.578 21 H 0.078 0.922 22 C -0.170 4.170 23 N -0.559 5.559 24 Si 0.737 3.263 25 H -0.186 1.186 26 H -0.156 1.156 27 H -0.206 1.206 28 C -0.048 4.048 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.164 0.836 33 H 0.171 0.829 34 H 0.169 0.831 35 H 0.162 0.838 36 H 0.142 0.858 37 H 0.195 0.805 38 H 0.174 0.826 39 H 0.091 0.909 40 H 0.127 0.873 41 H 0.208 0.792 42 H 0.083 0.917 43 H 0.132 0.868 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.533 24.699 6.120 25.690 hybrid contribution 0.763 -1.179 -1.041 1.748 sum 4.296 23.520 5.079 24.442 Atomic orbital electron populations 1.20722 0.87306 1.03207 1.03808 1.21478 0.97814 0.86433 0.90451 1.67544 1.09646 1.28150 1.15193 1.20380 0.88827 0.93945 0.92024 1.18639 0.93803 0.90203 1.05272 1.21551 0.92323 0.99994 0.98024 1.21464 1.01581 0.91594 0.99805 1.21716 0.93849 0.99830 0.96892 1.21436 0.95551 0.97661 1.00411 1.21447 1.00623 0.92058 0.97154 1.22310 1.03151 0.90846 1.02744 1.22028 0.92242 1.00210 0.91509 1.20769 0.95601 0.93850 1.10504 1.17933 0.84759 0.83024 0.77427 1.90713 1.22402 1.85061 1.47135 1.50025 1.27075 1.08620 1.50406 1.23313 1.00528 0.79779 0.95785 1.20614 0.89331 0.91782 0.83911 1.86471 1.40476 1.92948 1.17463 1.21308 1.23966 1.03248 1.09309 0.92173 1.25751 0.94073 0.97652 0.99479 1.69981 1.27026 1.28627 1.30219 0.86439 0.78494 0.81066 0.80316 1.18615 1.15565 1.20602 1.24632 0.89708 0.98024 0.92475 0.89568 0.89336 0.91507 0.83616 0.82851 0.83088 0.83802 0.85822 0.80499 0.82619 0.90943 0.87290 0.79156 0.91672 0.86803 0.90125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.73 8.76 71.24 0.62 -2.11 16 2 C 0.18 5.60 6.81 42.94 0.29 5.90 16 3 N -0.50 -14.53 9.31 -172.05 -1.60 -16.13 16 4 C 0.18 4.68 6.73 41.97 0.28 4.97 16 5 C -0.08 -1.66 5.88 -20.05 -0.12 -1.78 16 6 C -0.10 -1.56 9.42 22.50 0.21 -1.35 16 7 C -0.13 -1.53 10.03 22.24 0.22 -1.30 16 8 C -0.10 -1.23 10.04 22.32 0.22 -1.01 16 9 C -0.13 -1.95 10.03 22.23 0.22 -1.73 16 10 C -0.09 -1.90 9.57 22.50 0.22 -1.68 16 11 C -0.17 -3.84 9.44 22.53 0.21 -3.63 16 12 C -0.03 -0.92 9.00 22.70 0.20 -0.71 16 13 C -0.20 -6.61 5.77 -19.96 -0.12 -6.73 16 14 C 0.58 22.05 7.28 86.75 0.63 22.68 16 15 O -0.57 -24.38 15.31 -3.93 -0.06 -24.44 16 16 N -0.63 -23.89 3.58 -843.13 -3.02 -26.91 16 17 C 0.13 5.11 8.23 86.49 0.71 5.82 16 18 C 0.18 7.97 1.06 -10.88 -0.01 7.96 16 19 O -0.56 -25.29 13.35 -148.98 -1.99 -27.27 16 20 C -0.54 -27.15 9.19 25.60 0.24 -26.91 16 21 H 0.06 3.32 8.06 -2.91 -0.02 3.30 16 22 C 0.03 1.63 5.47 84.66 0.46 2.09 16 23 N -0.92 -51.06 13.96 21.45 0.30 -50.76 16 24 Si 0.91 36.86 24.31 68.60 1.67 38.53 16 25 H -0.26 -10.26 7.05 99.48 0.70 -9.56 16 26 H -0.23 -8.37 5.16 99.48 0.51 -7.86 16 27 H -0.28 -11.19 7.11 99.48 0.71 -10.49 16 28 C 0.07 2.69 5.07 86.44 0.44 3.13 16 29 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.07 2.19 6.61 -2.39 -0.02 2.17 16 32 H 0.15 1.63 6.17 -2.91 -0.02 1.61 16 33 H 0.15 0.99 8.06 -2.91 -0.02 0.97 16 34 H 0.15 0.90 8.06 -2.91 -0.02 0.88 16 35 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 36 H 0.12 2.68 7.53 -2.91 -0.02 2.66 16 37 H 0.18 2.58 6.17 -2.91 -0.02 2.56 16 38 H 0.16 3.70 6.30 -2.91 -0.02 3.68 16 39 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 40 H 0.11 4.03 8.09 -2.39 -0.02 4.01 16 41 H 0.36 14.99 3.57 -74.06 -0.26 14.72 16 42 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 43 H 0.11 3.73 7.77 -2.39 -0.02 3.71 16 44 H 0.08 2.79 6.78 -2.39 -0.02 2.77 16 Total: -1.00 -66.68 360.87 0.84 -65.84 By element: Atomic # 1 Polarization: 36.94 SS G_CDS: 0.59 Total: 37.52 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: 4.95 Total: 3.61 kcal Atomic # 7 Polarization: -89.47 SS G_CDS: -4.32 Total: -93.79 kcal Atomic # 8 Polarization: -49.67 SS G_CDS: -2.05 Total: -51.71 kcal Atomic # 14 Polarization: 36.86 SS G_CDS: 1.67 Total: 38.53 kcal Total: -66.68 0.84 -65.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186810226.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.749 kcal (2) G-P(sol) polarization free energy of solvation -66.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds