Wall clock time and date at job start Tue Mar 31 2020 21:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 112.90582 * 2 1 4 4 C 1.53779 * 113.61469 * 131.24783 * 2 1 3 5 5 H 1.09003 * 113.61509 * 25.34722 * 4 2 1 6 6 N 1.46499 * 113.61589 * 254.53179 * 4 2 1 7 7 C 1.34779 * 120.00219 * 154.99777 * 6 4 2 8 8 O 1.21594 * 119.99871 * 0.02562 * 7 6 4 9 9 N 1.34774 * 120.00260 * 180.02562 * 7 6 4 10 10 C 1.40131 * 120.00342 * 175.63392 * 9 7 6 11 11 C 1.38699 * 120.07527 * 34.58670 * 10 9 7 12 12 C 1.38195 * 120.01961 * 180.25772 * 11 10 9 13 13 C 1.38545 * 120.17656 * 359.75331 * 12 11 10 14 14 F 1.35103 * 119.92689 * 179.97438 * 13 12 11 15 15 C 1.38351 * 120.15080 * 359.97438 * 13 12 11 16 16 C 1.38741 * 119.97280 * 0.02562 * 15 13 12 17 17 O 1.35780 * 120.08273 * 179.97438 * 16 15 13 18 18 C 1.34807 * 116.99984 * 5.44080 * 17 16 15 19 19 H 1.07998 * 120.00474 * 354.94334 * 18 17 16 20 20 C 1.38630 * 119.99885 * 174.95143 * 18 17 16 21 21 N 1.31573 * 120.00409 * 359.97438 * 20 18 17 22 22 Si 1.86809 * 120.00007 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46824 * 269.99628 * 22 20 18 24 24 H 1.48498 * 109.47116 * 29.99424 * 22 20 18 25 25 H 1.48500 * 109.47180 * 149.99952 * 22 20 18 26 26 C 1.53774 * 87.08154 * 139.98145 * 4 2 1 27 27 C 1.53776 * 113.61356 * 228.74628 * 2 1 3 28 28 H 1.08993 * 113.61657 * 334.56528 * 27 2 1 29 29 O 1.42909 * 113.61339 * 105.39150 * 27 2 1 30 30 H 1.08997 * 109.47097 * 288.75357 * 1 2 3 31 31 H 1.09007 * 109.46992 * 48.75121 * 1 2 3 32 32 H 1.09003 * 109.46845 * 168.75035 * 1 2 3 33 33 H 1.09001 * 109.47050 * 191.25292 * 3 2 1 34 34 H 1.09007 * 109.46959 * 311.24680 * 3 2 1 35 35 H 1.08996 * 109.46960 * 71.24666 * 3 2 1 36 36 H 0.97002 * 119.99701 * 335.00145 * 6 4 2 37 37 H 0.97005 * 119.99632 * 355.62761 * 9 7 6 38 38 H 1.07998 * 119.98970 * 0.02562 * 11 10 9 39 39 H 1.08001 * 119.91147 * 179.72404 * 12 11 10 40 40 H 1.07998 * 120.00806 * 180.02562 * 15 13 12 41 41 H 0.97002 * 119.99328 * 0.02562 * 21 20 18 42 42 H 1.09003 * 113.61796 * 89.11705 * 26 4 2 43 43 H 1.08999 * 113.61779 * 220.02184 * 26 4 2 44 44 H 0.96698 * 113.99937 * 179.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1256 1.4094 0.0000 4 6 2.1461 -0.9290 1.0594 5 1 1.4940 -1.7526 1.3502 6 7 2.7092 -0.2163 2.2088 7 6 2.8173 -0.8375 3.4000 8 8 2.4479 -1.9897 3.5205 9 7 3.3349 -0.1817 4.4576 10 6 3.3633 -0.7953 5.7171 11 6 3.5651 -2.1637 5.8193 12 6 3.5876 -2.7683 7.0618 13 6 3.4140 -2.0104 8.2084 14 9 3.4364 -2.6068 9.4205 15 6 3.2177 -0.6440 8.1151 16 6 3.1940 -0.0305 6.8709 17 8 3.0010 1.3102 6.7768 18 6 2.9517 2.0040 7.9315 19 1 2.9817 1.4824 8.8767 20 6 2.8624 3.3872 7.9058 21 7 2.8263 4.0229 6.7544 22 14 2.7934 4.3486 9.5060 23 1 1.3779 4.5131 9.9239 24 1 3.5378 3.6119 10.5587 25 1 3.4093 5.6852 9.3074 26 6 3.1923 -1.3136 0.0001 27 6 2.1460 -0.9291 -1.0593 28 1 1.4946 -1.7536 -1.3488 29 8 2.6938 -0.2340 -2.1814 30 1 -0.3633 0.3304 0.9731 31 1 -0.3633 0.6776 -0.7727 32 1 -0.3633 -1.0080 -0.2005 33 1 3.1954 1.3518 -0.2005 34 1 1.6428 2.0078 -0.7727 35 1 1.9626 1.8726 0.9731 36 1 3.0042 0.7027 2.1126 37 1 3.6878 0.7150 4.3468 38 1 3.7010 -2.7574 4.9275 39 1 3.7405 -3.8347 7.1391 40 1 3.0830 -0.0553 9.0105 41 1 2.8618 3.5236 5.9235 42 1 4.0711 -0.6687 0.0000 43 1 3.4444 -2.3740 0.0001 44 1 3.0830 -0.8130 -2.8509 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189146740.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:36 Heat of formation + Delta-G solvation = -128.331519 kcal Electronic energy + Delta-G solvation = -29439.063170 eV Core-core repulsion = 25078.554118 eV Total energy + Delta-G solvation = -4360.509052 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.88259 -42.05795 -41.21869 -40.14386 -38.20224 -36.47376 -35.63546 -34.35095 -34.25450 -31.52424 -31.12268 -29.79714 -28.46646 -27.05612 -25.50708 -24.02003 -23.61079 -23.23934 -21.91872 -20.59353 -20.07199 -19.67290 -18.94671 -18.59732 -18.08960 -17.45899 -16.78689 -16.67775 -16.52705 -16.39991 -16.07975 -15.73819 -15.68020 -15.55601 -15.38172 -15.34436 -15.11405 -14.29128 -14.15967 -13.88304 -13.83935 -13.55820 -13.26312 -13.08306 -13.05012 -12.68763 -12.62355 -12.51881 -12.42415 -12.08852 -11.93944 -11.76210 -11.66490 -11.46758 -11.30264 -11.06773 -10.78962 -10.66752 -10.08460 -9.62237 -8.96400 -8.82992 -6.26345 0.13655 0.39021 1.49815 1.51357 1.61281 1.77713 1.95816 2.29339 2.63880 2.98663 3.03673 3.07297 3.27318 3.31680 3.36846 3.64792 3.78182 3.86666 3.89935 4.10286 4.20023 4.28615 4.41131 4.47106 4.54316 4.62139 4.72958 4.86183 4.89677 4.90778 4.98848 5.01654 5.02570 5.08572 5.14043 5.24251 5.32879 5.36538 5.38358 5.47825 5.56082 5.84573 5.95542 6.21652 6.79077 6.84546 6.95141 7.37575 7.48881 8.48769 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010836 B = 0.003266 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.315959 B = 8570.275220 C =10738.471282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.083 4.083 3 C -0.123 4.123 4 C 0.141 3.859 5 H 0.107 0.893 6 N -0.717 5.717 7 C 0.704 3.296 8 O -0.609 6.609 9 N -0.668 5.668 10 C 0.080 3.920 11 C -0.050 4.050 12 C -0.199 4.199 13 C 0.122 3.878 14 F -0.143 7.143 15 C -0.262 4.262 16 C 0.133 3.867 17 O -0.223 6.223 18 C -0.489 4.489 19 H 0.089 0.911 20 C -0.031 4.031 21 N -0.907 5.907 22 Si 1.141 2.859 23 H -0.268 1.268 24 H -0.263 1.263 25 H -0.272 1.272 26 C -0.176 4.176 27 C 0.101 3.899 28 H 0.105 0.895 29 O -0.566 6.566 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.407 0.593 37 H 0.411 0.589 38 H 0.156 0.844 39 H 0.160 0.840 40 H 0.135 0.865 41 H 0.266 0.734 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.345 -9.116 -14.919 17.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.084 4.084 3 C -0.181 4.181 4 C 0.035 3.965 5 H 0.125 0.875 6 N -0.372 5.372 7 C 0.405 3.595 8 O -0.489 6.489 9 N -0.315 5.315 10 C -0.016 4.016 11 C -0.071 4.071 12 C -0.219 4.219 13 C 0.102 3.898 14 F -0.122 7.122 15 C -0.282 4.282 16 C 0.080 3.920 17 O -0.129 6.129 18 C -0.565 4.565 19 H 0.106 0.894 20 C -0.229 4.229 21 N -0.540 5.540 22 Si 0.958 3.042 23 H -0.193 1.193 24 H -0.187 1.187 25 H -0.196 1.196 26 C -0.215 4.215 27 C 0.041 3.959 28 H 0.122 0.878 29 O -0.374 6.374 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.244 0.756 37 H 0.247 0.753 38 H 0.173 0.827 39 H 0.178 0.822 40 H 0.152 0.848 41 H 0.074 0.926 42 H 0.108 0.892 43 H 0.099 0.901 44 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -0.348 -7.920 -14.081 16.160 hybrid contribution 0.524 -1.162 -0.495 1.367 sum 0.175 -9.082 -14.577 17.175 Atomic orbital electron populations 1.21769 0.92944 1.02920 1.01883 1.22444 0.96298 0.96031 0.93585 1.21386 1.01302 0.93911 1.01464 1.22346 0.96179 0.95507 0.82424 0.87503 1.45013 1.67067 1.17217 1.07885 1.16024 0.78063 0.84664 0.80763 1.90832 1.56844 1.17085 1.84162 1.42216 1.63418 1.20060 1.05810 1.16900 1.10417 0.92359 0.81934 1.20893 0.96283 0.91610 0.98287 1.20919 1.09807 1.01368 0.89808 1.17453 1.01755 0.90053 0.80535 1.91434 1.94071 1.83794 1.42904 1.20939 1.14552 0.94346 0.98409 1.19022 0.95734 0.84651 0.92586 1.83609 1.80347 1.14564 1.34400 1.22570 1.57299 0.92165 0.84438 0.89372 1.28122 0.93702 0.93251 1.07860 1.70703 1.45395 1.39219 0.98697 0.82582 0.78388 0.74808 0.68419 1.19286 1.18746 1.19643 1.24118 0.98688 1.02693 0.95987 1.23150 0.94185 0.94038 0.84528 0.87772 1.86482 1.79278 1.38342 1.33266 0.93378 0.91406 0.91114 0.91756 0.91479 0.92968 0.75586 0.75322 0.82682 0.82193 0.84788 0.92562 0.89241 0.90131 0.75440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.19 71.98 0.66 -1.73 16 2 C -0.08 -1.48 1.35 -51.65 -0.07 -1.55 16 3 C -0.12 -2.32 7.44 71.98 0.54 -1.79 16 4 C 0.14 3.03 3.69 45.51 0.17 3.19 16 5 H 0.11 2.59 7.42 -2.39 -0.02 2.58 16 6 N -0.72 -18.41 5.23 -455.30 -2.38 -20.79 16 7 C 0.70 23.74 8.41 179.05 1.51 25.24 16 8 O -0.61 -23.30 13.36 -4.01 -0.05 -23.35 16 9 N -0.67 -24.35 5.20 -316.70 -1.65 -25.99 16 10 C 0.08 3.28 6.33 38.22 0.24 3.52 16 11 C -0.05 -1.85 8.69 22.37 0.19 -1.65 16 12 C -0.20 -6.87 10.02 22.33 0.22 -6.65 16 13 C 0.12 4.73 7.29 22.37 0.16 4.89 16 14 F -0.14 -5.24 17.26 44.97 0.78 -4.46 16 15 C -0.26 -11.63 9.14 22.42 0.20 -11.43 16 16 C 0.13 6.27 6.66 22.68 0.15 6.42 16 17 O -0.22 -11.94 8.71 -22.83 -0.20 -12.14 16 18 C -0.49 -26.81 9.49 67.91 0.64 -26.17 16 19 H 0.09 4.63 5.20 -2.91 -0.02 4.61 16 20 C -0.03 -1.66 5.49 84.83 0.47 -1.20 16 21 N -0.91 -52.19 13.70 21.61 0.30 -51.89 16 22 Si 1.14 46.12 29.92 68.60 2.05 48.17 16 23 H -0.27 -10.19 7.11 99.48 0.71 -9.49 16 24 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 25 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 26 C -0.18 -2.97 7.36 31.12 0.23 -2.74 16 27 C 0.10 1.43 4.62 31.12 0.14 1.57 16 28 H 0.10 1.11 7.96 -2.39 -0.02 1.09 16 29 O -0.57 -7.83 12.77 -148.98 -1.90 -9.74 16 30 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.07 1.03 7.94 -2.39 -0.02 1.02 16 33 H 0.06 1.20 7.19 -2.39 -0.02 1.18 16 34 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 35 H 0.05 1.04 7.10 -2.39 -0.02 1.03 16 36 H 0.41 9.30 6.68 -92.71 -0.62 8.68 16 37 H 0.41 14.34 8.58 -92.70 -0.80 13.54 16 38 H 0.16 5.45 6.19 -2.91 -0.02 5.43 16 39 H 0.16 4.39 8.06 -2.91 -0.02 4.37 16 40 H 0.13 6.13 5.64 -2.91 -0.02 6.11 16 41 H 0.27 15.58 7.97 -92.71 -0.74 14.84 16 42 H 0.09 1.61 7.65 -2.39 -0.02 1.59 16 43 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.40 2.07 9.12 -74.06 -0.68 1.40 16 Total: -1.00 -68.26 367.92 1.44 -66.82 By element: Atomic # 1 Polarization: 44.40 SS G_CDS: -0.97 Total: 43.44 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: 5.46 Total: -10.06 kcal Atomic # 7 Polarization: -94.95 SS G_CDS: -3.73 Total: -98.68 kcal Atomic # 8 Polarization: -43.07 SS G_CDS: -2.15 Total: -45.23 kcal Atomic # 9 Polarization: -5.24 SS G_CDS: 0.78 Total: -4.46 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.05 Total: 48.17 kcal Total: -68.26 1.44 -66.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189146740.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.511 kcal (2) G-P(sol) polarization free energy of solvation -68.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds