Wall clock time and date at job start Tue Mar 31 2020 21:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 112.85116 * 2 1 4 4 C 1.53785 * 113.61443 * 228.69734 * 2 1 3 5 5 H 1.08999 * 113.60950 * 105.46742 * 4 2 1 6 6 O 1.42898 * 113.61392 * 334.64932 * 4 2 1 7 7 C 1.53779 * 87.07958 * 220.01606 * 4 2 1 8 8 C 1.53775 * 87.08398 * 25.43418 * 7 4 2 9 9 H 1.08999 * 113.69496 * 89.12710 * 8 7 4 10 10 N 1.46504 * 113.61233 * 220.02010 * 8 7 4 11 11 C 1.34775 * 119.99457 * 252.49466 * 10 8 7 12 12 O 1.21593 * 120.00686 * 359.97438 * 11 10 8 13 13 N 1.34782 * 119.99576 * 180.02562 * 11 10 8 14 14 C 1.40136 * 119.99784 * 175.91552 * 13 11 10 15 15 C 1.38693 * 120.07736 * 34.56929 * 14 13 11 16 16 C 1.38196 * 120.02196 * 179.97438 * 15 14 13 17 17 C 1.38547 * 120.17752 * 0.02562 * 16 15 14 18 18 F 1.35095 * 119.92776 * 179.97438 * 17 16 15 19 19 C 1.38346 * 120.14688 * 0.02562 * 17 16 15 20 20 C 1.38739 * 119.98022 * 359.74558 * 19 17 16 21 21 O 1.35776 * 120.08979 * 180.27235 * 20 19 17 22 22 C 1.34802 * 117.00094 * 5.43897 * 21 20 19 23 23 H 1.08000 * 119.99992 * 354.95147 * 22 21 20 24 24 C 1.38641 * 119.99987 * 174.95167 * 22 21 20 25 25 N 1.31569 * 120.00094 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99810 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47032 * 59.99935 * 26 24 22 28 28 H 1.48503 * 109.46906 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47178 * 300.00111 * 26 24 22 30 30 H 1.09003 * 109.47041 * 288.79573 * 1 2 3 31 31 H 1.08994 * 109.47428 * 48.79820 * 1 2 3 32 32 H 1.09002 * 109.47285 * 168.80651 * 1 2 3 33 33 H 1.08996 * 109.47306 * 191.19452 * 3 2 1 34 34 H 1.08996 * 109.47345 * 311.20346 * 3 2 1 35 35 H 1.09005 * 109.46594 * 71.19769 * 3 2 1 36 36 H 0.96701 * 114.00196 * 179.97438 * 6 4 2 37 37 H 1.08994 * 113.61462 * 270.87726 * 7 4 2 38 38 H 1.09010 * 113.61117 * 139.98284 * 7 4 2 39 39 H 0.97000 * 120.00177 * 72.49428 * 10 8 7 40 40 H 0.96999 * 120.00055 * 355.63382 * 13 11 10 41 41 H 1.08001 * 119.98910 * 0.02562 * 15 14 13 42 42 H 1.07997 * 119.91332 * 179.97438 * 16 15 14 43 43 H 1.08004 * 120.01350 * 180.02562 * 19 17 16 44 44 H 0.96994 * 119.99963 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 6 2.1460 -0.9300 -1.0585 5 1 2.5649 -0.4005 -1.9142 6 8 1.2911 -2.0102 -1.4386 7 6 3.1923 -1.3135 0.0011 8 6 2.1461 -0.9281 1.0602 9 1 1.4940 -1.7515 1.3516 10 7 2.7093 -0.2144 2.2089 11 6 2.8174 -0.8347 3.4006 12 8 2.4472 -1.9864 3.5224 13 7 3.3351 -0.1779 4.4576 14 6 3.3690 -0.7927 5.7164 15 6 3.5760 -2.1604 5.8166 16 6 3.6098 -2.7654 7.0586 17 6 3.4366 -2.0093 8.2066 18 9 3.4700 -2.6061 9.4182 19 6 3.2285 -0.6447 8.1149 20 6 3.1982 -0.0300 6.8715 21 8 2.9997 1.3100 6.7792 22 6 2.9515 2.0026 7.9347 23 1 2.9867 1.4801 8.8793 24 6 2.8567 3.3855 7.9105 25 7 2.8133 4.0220 6.7598 26 14 2.7892 4.3451 9.5118 27 1 4.0216 4.0837 10.2979 28 1 2.6893 5.7968 9.2150 29 1 1.6023 3.9178 10.2953 30 1 -0.3633 0.3311 0.9729 31 1 -0.3634 0.6769 -0.7731 32 1 -0.3634 -1.0081 -0.1995 33 1 3.1942 1.3533 -0.1995 34 1 1.6414 2.0077 -0.7731 35 1 1.9599 1.8733 0.9729 36 1 1.6729 -2.5984 -2.1044 37 1 4.0710 -0.6687 0.0005 38 1 3.4444 -2.3741 0.0021 39 1 3.0043 0.7046 2.1119 40 1 3.6879 0.7188 4.3461 41 1 3.7118 -2.7527 4.9238 42 1 3.7707 -3.8307 7.1346 43 1 3.0942 -0.0572 9.0112 44 1 2.7466 4.9895 6.7430 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189146785.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:44 Heat of formation + Delta-G solvation = -120.891708 kcal Electronic energy + Delta-G solvation = -29429.906094 eV Core-core repulsion = 25069.719657 eV Total energy + Delta-G solvation = -4360.186438 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.82860 -41.99309 -41.15615 -40.05737 -38.05884 -36.42579 -35.55292 -34.30837 -34.17973 -31.42361 -31.05712 -29.77042 -28.38572 -27.39414 -25.59509 -24.01467 -23.55601 -23.16418 -21.86548 -20.20806 -19.98104 -19.64331 -18.97333 -18.52221 -17.79088 -17.16148 -16.94947 -16.70670 -16.58326 -16.28052 -16.00257 -15.92171 -15.79810 -15.39287 -15.24952 -14.92776 -14.79283 -14.52396 -14.06128 -13.77735 -13.73833 -13.44046 -13.37224 -13.26245 -13.05620 -13.01874 -12.72728 -12.55852 -12.36355 -12.17043 -12.00426 -11.90846 -11.65483 -11.34499 -11.04807 -11.01997 -10.81582 -10.65430 -10.01456 -9.54091 -8.74497 -8.50435 -6.16601 0.21417 0.46676 1.37454 1.45719 1.50919 1.60761 2.03542 2.14910 2.68380 3.03536 3.05921 3.15615 3.21014 3.41457 3.45603 3.66197 3.82556 3.94732 4.06094 4.16271 4.23021 4.36786 4.49965 4.53030 4.61910 4.72903 4.75138 4.89901 4.94606 4.96967 4.98638 5.02722 5.11445 5.13006 5.22443 5.30407 5.33500 5.37425 5.44224 5.54999 5.62001 5.92270 5.95060 6.08238 6.93754 6.94826 6.96251 7.46618 7.63469 8.69650 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010955 B = 0.003284 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.244880 B = 8524.034978 C =10698.053571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.083 4.083 3 C -0.135 4.135 4 C 0.102 3.898 5 H 0.102 0.898 6 O -0.565 6.565 7 C -0.176 4.176 8 C 0.142 3.858 9 H 0.086 0.914 10 N -0.718 5.718 11 C 0.701 3.299 12 O -0.615 6.615 13 N -0.666 5.666 14 C 0.078 3.922 15 C -0.052 4.052 16 C -0.204 4.204 17 C 0.122 3.878 18 F -0.144 7.144 19 C -0.264 4.264 20 C 0.131 3.869 21 O -0.201 6.201 22 C -0.418 4.418 23 H 0.098 0.902 24 C -0.007 4.007 25 N -0.904 5.904 26 Si 1.010 2.990 27 H -0.259 1.259 28 H -0.269 1.269 29 H -0.263 1.263 30 H 0.038 0.962 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.057 0.943 36 H 0.399 0.601 37 H 0.106 0.894 38 H 0.072 0.928 39 H 0.409 0.591 40 H 0.413 0.587 41 H 0.151 0.849 42 H 0.157 0.843 43 H 0.137 0.863 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.034 -5.767 -15.773 16.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.084 4.084 3 C -0.192 4.192 4 C 0.042 3.958 5 H 0.120 0.880 6 O -0.373 6.373 7 C -0.215 4.215 8 C 0.037 3.963 9 H 0.104 0.896 10 N -0.373 5.373 11 C 0.402 3.598 12 O -0.495 6.495 13 N -0.313 5.313 14 C -0.017 4.017 15 C -0.072 4.072 16 C -0.224 4.224 17 C 0.102 3.898 18 F -0.123 7.123 19 C -0.285 4.285 20 C 0.077 3.923 21 O -0.106 6.106 22 C -0.494 4.494 23 H 0.116 0.884 24 C -0.207 4.207 25 N -0.540 5.540 26 Si 0.830 3.170 27 H -0.184 1.184 28 H -0.194 1.194 29 H -0.188 1.188 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.250 0.750 37 H 0.125 0.875 38 H 0.091 0.909 39 H 0.246 0.754 40 H 0.249 0.751 41 H 0.169 0.831 42 H 0.175 0.825 43 H 0.155 0.845 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.233 -6.131 -15.534 16.745 hybrid contribution 0.404 0.941 0.869 1.343 sum 1.637 -5.190 -14.664 15.642 Atomic orbital electron populations 1.21578 0.93945 1.02358 1.01089 1.22445 0.96352 0.95665 0.93976 1.21639 1.01885 0.92768 1.02923 1.22557 0.89637 0.88220 0.95337 0.88028 1.86428 1.44890 1.41855 1.64154 1.24133 0.98408 1.02851 0.96088 1.22568 0.96041 0.95196 0.82482 0.89555 1.45102 1.67063 1.17263 1.07892 1.16095 0.78090 0.84645 0.80944 1.90832 1.56980 1.17475 1.84238 1.42219 1.63294 1.19999 1.05783 1.16908 1.10396 0.92314 0.82112 1.20850 0.96452 0.91745 0.98169 1.20869 1.10362 1.01250 0.89894 1.17440 1.01770 0.90181 0.80403 1.91425 1.94081 1.83833 1.42970 1.20923 1.14848 0.94278 0.98434 1.19150 0.95268 0.85411 0.92446 1.83908 1.79258 1.13559 1.33893 1.21715 1.53695 0.89687 0.84319 0.88420 1.26353 0.95510 0.96114 1.02697 1.70105 1.47228 1.09675 1.26996 0.84757 0.79722 0.76937 0.75579 1.18376 1.19382 1.18776 0.94240 0.91146 0.92326 0.90221 0.90127 0.92402 0.75050 0.87531 0.90930 0.75369 0.75079 0.83109 0.82515 0.84545 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 9.04 71.98 0.65 -2.14 16 2 C -0.08 -1.54 1.35 -51.65 -0.07 -1.61 16 3 C -0.14 -1.99 8.05 71.98 0.58 -1.42 16 4 C 0.10 1.48 4.69 31.12 0.15 1.63 16 5 H 0.10 0.94 8.10 -2.39 -0.02 0.92 16 6 O -0.56 -8.87 12.13 -148.98 -1.81 -10.68 16 7 C -0.18 -3.05 7.36 31.12 0.23 -2.82 16 8 C 0.14 3.44 3.63 45.52 0.17 3.60 16 9 H 0.09 2.69 7.42 -2.39 -0.02 2.67 16 10 N -0.72 -19.44 5.23 -455.28 -2.38 -21.82 16 11 C 0.70 25.18 8.41 179.05 1.51 26.69 16 12 O -0.61 -25.47 13.37 -4.01 -0.05 -25.52 16 13 N -0.67 -25.38 5.20 -316.69 -1.65 -27.02 16 14 C 0.08 3.34 6.33 38.22 0.24 3.58 16 15 C -0.05 -1.98 8.69 22.37 0.19 -1.79 16 16 C -0.20 -7.30 10.02 22.33 0.22 -7.07 16 17 C 0.12 4.81 7.29 22.37 0.16 4.97 16 18 F -0.14 -5.35 17.26 44.97 0.78 -4.57 16 19 C -0.26 -11.77 9.14 22.42 0.20 -11.57 16 20 C 0.13 6.25 6.66 22.69 0.15 6.41 16 21 O -0.20 -10.94 9.31 -22.75 -0.21 -11.16 16 22 C -0.42 -22.79 9.49 67.92 0.64 -22.14 16 23 H 0.10 5.00 5.20 -2.91 -0.02 4.99 16 24 C -0.01 -0.36 5.49 84.83 0.47 0.10 16 25 N -0.90 -50.37 13.67 21.61 0.30 -50.08 16 26 Si 1.01 40.61 29.55 68.60 2.03 42.63 16 27 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 28 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 29 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 30 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.06 1.36 6.96 -2.39 -0.02 1.34 16 33 H 0.08 0.91 7.35 -2.39 -0.02 0.89 16 34 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.06 1.02 7.10 -2.38 -0.02 1.00 16 36 H 0.40 2.59 9.12 -74.06 -0.68 1.91 16 37 H 0.11 1.54 7.66 -2.39 -0.02 1.52 16 38 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 39 H 0.41 9.31 6.68 -92.71 -0.62 8.69 16 40 H 0.41 15.09 8.58 -92.71 -0.80 14.29 16 41 H 0.15 5.62 6.20 -2.91 -0.02 5.60 16 42 H 0.16 4.54 8.06 -2.91 -0.02 4.52 16 43 H 0.14 6.14 5.64 -2.91 -0.02 6.12 16 44 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -69.37 367.63 1.50 -67.87 By element: Atomic # 1 Polarization: 44.91 SS G_CDS: -1.00 Total: 43.92 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: 5.50 Total: -3.57 kcal Atomic # 7 Polarization: -95.19 SS G_CDS: -3.73 Total: -98.92 kcal Atomic # 8 Polarization: -45.28 SS G_CDS: -2.07 Total: -47.36 kcal Atomic # 9 Polarization: -5.35 SS G_CDS: 0.78 Total: -4.57 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.63 kcal Total: -69.37 1.50 -67.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189146785.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.019 kcal (2) G-P(sol) polarization free energy of solvation -69.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds