Wall clock time and date at job start Tue Mar 31 2020 21:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 112.90836 * 2 1 4 4 C 1.53959 * 113.61020 * 228.68033 * 2 1 3 5 5 H 1.09006 * 113.61110 * 156.28483 * 4 2 1 6 6 O 1.42898 * 113.67026 * 25.41005 * 4 2 1 7 7 C 1.53782 * 87.11178 * 270.83906 * 4 2 1 8 8 C 1.53779 * 113.61477 * 131.25557 * 2 1 3 9 9 H 1.09004 * 113.61478 * 203.74197 * 8 2 1 10 10 N 1.46491 * 113.61459 * 334.56712 * 8 2 1 11 11 C 1.34778 * 120.00245 * 203.46967 * 10 8 2 12 12 O 1.21594 * 119.99566 * 0.02562 * 11 10 8 13 13 N 1.34774 * 120.00199 * 179.97438 * 11 10 8 14 14 C 1.40136 * 119.99872 * 175.62978 * 13 11 10 15 15 C 1.38694 * 120.07680 * 34.59717 * 14 13 11 16 16 C 1.38201 * 120.02389 * 179.97438 * 15 14 13 17 17 C 1.38542 * 120.17288 * 0.02562 * 16 15 14 18 18 F 1.35106 * 119.92587 * 180.02562 * 17 16 15 19 19 C 1.38342 * 120.15236 * 359.97438 * 17 16 15 20 20 C 1.38743 * 119.97715 * 0.02562 * 19 17 16 21 21 O 1.35782 * 120.08583 * 180.02562 * 20 19 17 22 22 C 1.34801 * 117.00083 * 354.55773 * 21 20 19 23 23 H 1.07996 * 120.00317 * 5.03429 * 22 21 20 24 24 C 1.38638 * 119.99920 * 185.04010 * 22 21 20 25 25 N 1.31577 * 120.00047 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00081 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47303 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.47106 * 120.00054 * 26 24 22 29 29 H 1.48497 * 109.47415 * 239.99953 * 26 24 22 30 30 H 1.08997 * 109.46642 * 288.74368 * 1 2 3 31 31 H 1.08999 * 109.47166 * 48.74483 * 1 2 3 32 32 H 1.08995 * 109.46960 * 168.74283 * 1 2 3 33 33 H 1.09002 * 109.47173 * 191.25059 * 3 2 1 34 34 H 1.08996 * 109.47599 * 311.25204 * 3 2 1 35 35 H 1.08998 * 109.46750 * 71.25347 * 3 2 1 36 36 H 0.96700 * 113.99873 * 182.93628 * 6 4 2 37 37 H 1.08996 * 113.62128 * 220.09328 * 7 4 2 38 38 H 1.09007 * 113.68966 * 89.19613 * 7 4 2 39 39 H 0.96998 * 119.99940 * 23.47194 * 10 8 2 40 40 H 0.96989 * 120.00361 * 355.63167 * 13 11 10 41 41 H 1.08002 * 119.98979 * 359.95919 * 15 14 13 42 42 H 1.07999 * 119.91287 * 180.02562 * 16 15 14 43 43 H 1.08002 * 120.01224 * 180.27777 * 19 17 16 44 44 H 0.96998 * 119.99906 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1256 1.4093 0.0000 4 6 2.1466 -0.9314 -1.0595 5 1 3.1594 -0.6521 -1.3501 6 8 1.2932 -1.1694 -2.1807 7 6 2.0950 -2.0439 0.0010 8 6 2.1460 -0.9291 1.0593 9 1 3.1586 -0.6492 1.3499 10 7 1.2704 -1.1705 2.2086 11 6 1.7984 -1.5421 3.3917 12 8 3.0015 -1.6765 3.5051 13 7 0.9929 -1.7637 4.4493 14 6 1.5314 -2.2381 5.6529 15 6 2.7974 -1.8378 6.0536 16 6 3.3271 -2.3059 7.2411 17 6 2.5969 -3.1760 8.0343 18 9 3.1195 -3.6301 9.1945 19 6 1.3334 -3.5800 7.6416 20 6 0.7955 -3.1139 6.4506 21 8 -0.4446 -3.5087 6.0633 22 6 -1.0550 -4.4408 6.8221 23 1 -0.5927 -4.7793 7.7375 24 6 -2.2761 -4.9651 6.4272 25 7 -2.8391 -4.5533 5.3115 26 14 -3.1216 -6.2574 7.4782 27 1 -2.2878 -6.5472 8.6724 28 1 -4.4485 -5.7515 7.9125 29 1 -3.3009 -7.5003 6.6856 30 1 -0.3632 0.3302 0.9732 31 1 -0.3633 0.6776 -0.7726 32 1 -0.3633 -1.0079 -0.2006 33 1 3.1954 1.3516 -0.2005 34 1 1.6429 2.0078 -0.7726 35 1 1.9627 1.8725 0.9732 36 1 1.6573 -1.7891 -2.8276 37 1 2.9747 -2.6875 0.0020 38 1 1.1602 -2.6046 0.0024 39 1 0.3107 -1.0630 2.1182 40 1 0.0405 -1.5949 4.3773 41 1 3.3695 -1.1601 5.4373 42 1 4.3130 -1.9926 7.5516 43 1 0.7643 -4.2548 8.2638 44 1 -3.6932 -4.9204 5.0350 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189146804.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:50 Heat of formation + Delta-G solvation = -100.497782 kcal Electronic energy + Delta-G solvation = -29395.244154 eV Core-core repulsion = 25035.942063 eV Total energy + Delta-G solvation = -4359.302091 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -48.23402 -40.83782 -39.79168 -38.53078 -36.39924 -35.61769 -34.02301 -33.05965 -32.39989 -30.66357 -29.38933 -28.19558 -27.65927 -25.51211 -24.40621 -22.80318 -22.35620 -21.59450 -20.44886 -19.00031 -18.32223 -18.17995 -17.76806 -17.43417 -16.62116 -15.59655 -15.36925 -15.23744 -15.21368 -15.03056 -14.93412 -14.43007 -14.27967 -14.08824 -13.65807 -13.51086 -13.43930 -13.21025 -13.05369 -12.71279 -12.43992 -12.32723 -12.27452 -12.12701 -11.81553 -11.66734 -11.38105 -11.20308 -10.97930 -10.88795 -10.72054 -10.56061 -10.51232 -9.94541 -9.84470 -9.76776 -9.42550 -8.96409 -8.89011 -7.86589 -7.08360 -6.60178 -4.17704 1.86732 2.13830 2.89029 3.05673 3.08355 3.13517 3.43635 3.84927 3.93069 4.15312 4.34035 4.37000 4.56846 4.64117 4.68506 4.85262 4.98046 4.99075 5.14313 5.19938 5.33823 5.44208 5.50184 5.60182 5.67186 5.75370 5.77974 5.78918 5.82449 5.93842 6.04854 6.10917 6.21529 6.25286 6.55223 6.65299 6.72719 6.92582 6.94933 7.08922 7.16997 7.32473 7.42653 7.67870 7.84265 8.27650 8.84886 8.87840 9.47669 10.57095 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010493 B = 0.003303 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.908590 B = 8474.500597 C =10624.429654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.081 4.081 3 C -0.137 4.137 4 C 0.086 3.914 5 H 0.084 0.916 6 O -0.554 6.554 7 C -0.185 4.185 8 C 0.155 3.845 9 H 0.117 0.883 10 N -0.732 5.732 11 C 0.705 3.295 12 O -0.587 6.587 13 N -0.664 5.664 14 C 0.079 3.921 15 C -0.051 4.051 16 C -0.228 4.228 17 C 0.128 3.872 18 F -0.152 7.152 19 C -0.259 4.259 20 C 0.158 3.842 21 O -0.169 6.169 22 C -0.392 4.392 23 H 0.095 0.905 24 C 0.043 3.957 25 N -0.860 5.860 26 Si 0.942 3.058 27 H -0.265 1.265 28 H -0.275 1.275 29 H -0.275 1.275 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.377 0.623 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.400 0.600 40 H 0.410 0.590 41 H 0.143 0.857 42 H 0.122 0.878 43 H 0.143 0.857 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.653 8.387 -10.848 15.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.082 4.082 3 C -0.194 4.194 4 C 0.027 3.973 5 H 0.101 0.899 6 O -0.359 6.359 7 C -0.224 4.224 8 C 0.049 3.951 9 H 0.135 0.865 10 N -0.387 5.387 11 C 0.406 3.594 12 O -0.465 6.465 13 N -0.311 5.311 14 C -0.016 4.016 15 C -0.071 4.071 16 C -0.249 4.249 17 C 0.108 3.892 18 F -0.131 7.131 19 C -0.280 4.280 20 C 0.101 3.899 21 O -0.072 6.072 22 C -0.467 4.467 23 H 0.112 0.888 24 C -0.162 4.162 25 N -0.494 5.494 26 Si 0.766 3.234 27 H -0.189 1.189 28 H -0.200 1.200 29 H -0.201 1.201 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.224 0.776 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.236 0.764 40 H 0.246 0.754 41 H 0.161 0.839 42 H 0.140 0.860 43 H 0.160 0.840 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.979 8.686 -10.736 15.473 hybrid contribution -0.888 -1.222 0.410 1.565 sum 6.091 7.464 -10.327 14.123 Atomic orbital electron populations 1.21404 0.92120 1.03068 1.01581 1.22450 0.97329 0.94758 0.93701 1.21755 1.00437 0.94914 1.02328 1.23304 0.93258 0.95943 0.84817 0.89867 1.86508 1.46862 1.67908 1.34629 1.24198 1.03695 0.98081 0.96473 1.22082 0.95247 0.94948 0.82842 0.86474 1.45017 1.10366 1.74284 1.09068 1.15909 0.85432 0.77989 0.80048 1.90859 1.12868 1.59010 1.83781 1.42184 1.11316 1.67975 1.09621 1.16637 0.95297 1.02190 0.87489 1.20679 0.93666 0.98423 0.94359 1.20484 1.01600 1.05283 0.97485 1.17459 0.92616 0.96670 0.82467 1.91410 1.86794 1.87900 1.46967 1.20842 0.96697 1.10140 1.00301 1.18791 0.86797 0.92157 0.92108 1.83916 1.21912 1.51749 1.49673 1.21392 1.03116 1.17122 1.05112 0.88792 1.25275 0.95960 0.98160 0.96811 1.70020 1.17201 1.41195 1.21003 0.85622 0.79178 0.79359 0.79199 1.18950 1.20041 1.20058 0.92348 0.91749 0.91557 0.92333 0.92164 0.91912 0.77614 0.90706 0.88701 0.76443 0.75399 0.83948 0.85978 0.83987 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 7.46 37.16 0.28 -0.93 16 2 C -0.08 -0.77 1.35 -153.60 -0.21 -0.98 16 3 C -0.14 -1.15 9.20 37.16 0.34 -0.81 16 4 C 0.09 0.76 4.63 -25.82 -0.12 0.64 16 5 H 0.08 0.61 7.97 -51.93 -0.41 0.20 16 6 O -0.55 -4.94 12.77 -35.23 -0.45 -5.39 16 7 C -0.19 -1.98 7.36 -25.91 -0.19 -2.17 16 8 C 0.16 1.80 3.67 -67.12 -0.25 1.55 16 9 H 0.12 1.46 7.46 -51.93 -0.39 1.07 16 10 N -0.73 -9.86 5.25 -57.88 -0.30 -10.16 16 11 C 0.71 12.30 8.41 -86.92 -0.73 11.57 16 12 O -0.59 -11.68 13.37 5.28 0.07 -11.60 16 13 N -0.66 -12.31 5.20 -14.07 -0.07 -12.38 16 14 C 0.08 1.64 6.33 -83.44 -0.53 1.12 16 15 C -0.05 -0.98 8.70 -39.43 -0.34 -1.32 16 16 C -0.23 -4.27 10.02 -39.48 -0.40 -4.67 16 17 C 0.13 2.57 7.29 -39.43 -0.29 2.28 16 18 F -0.15 -2.93 17.26 2.25 0.04 -2.89 16 19 C -0.26 -5.68 9.14 -39.36 -0.36 -6.04 16 20 C 0.16 3.64 6.66 -38.94 -0.26 3.38 16 21 O -0.17 -4.42 9.31 0.03 0.00 -4.42 16 22 C -0.39 -10.34 9.49 30.88 0.29 -10.05 16 23 H 0.09 2.35 5.20 -52.49 -0.27 2.07 16 24 C 0.04 1.11 5.49 -17.51 -0.10 1.01 16 25 N -0.86 -23.46 13.67 55.48 0.76 -22.71 16 26 Si 0.94 19.76 29.55 -169.99 -5.02 14.74 16 27 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 28 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 29 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 30 H 0.06 0.54 7.07 -51.93 -0.37 0.17 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.70 7.20 -51.93 -0.37 0.33 16 33 H 0.06 0.44 7.95 -51.93 -0.41 0.03 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.38 1.86 9.12 45.56 0.42 2.27 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.09 1.12 7.67 -51.93 -0.40 0.72 16 39 H 0.40 4.80 6.63 -40.82 -0.27 4.53 16 40 H 0.41 7.21 8.58 -40.82 -0.35 6.86 16 41 H 0.14 2.68 6.19 -52.49 -0.32 2.36 16 42 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 43 H 0.14 3.12 5.64 -52.49 -0.30 2.82 16 44 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 368.51 15.07 5.55 5.55 Total: -1.00 -31.04 368.51 -6.98 -38.02 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: -4.70 Total: 16.65 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -2.85 Total: -5.41 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.38 Total: -45.25 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.38 Total: -21.42 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.04 Total: -2.89 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.04 -6.98 -38.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189146804.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.473 kcal (2) G-P(sol) polarization free energy of solvation -31.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds