Wall clock time and date at job start Tue Mar 31 2020 21:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 112.90836 * 2 1 4 4 C 1.53959 * 113.61020 * 228.68033 * 2 1 3 5 5 H 1.09006 * 113.61110 * 156.28483 * 4 2 1 6 6 O 1.42898 * 113.67026 * 25.41005 * 4 2 1 7 7 C 1.53782 * 87.11178 * 270.83906 * 4 2 1 8 8 C 1.53779 * 113.61477 * 131.25557 * 2 1 3 9 9 H 1.09004 * 113.61478 * 203.74197 * 8 2 1 10 10 N 1.46491 * 113.61459 * 334.56712 * 8 2 1 11 11 C 1.34778 * 120.00245 * 203.46967 * 10 8 2 12 12 O 1.21594 * 119.99566 * 0.02562 * 11 10 8 13 13 N 1.34774 * 120.00199 * 179.97438 * 11 10 8 14 14 C 1.40136 * 119.99872 * 175.62978 * 13 11 10 15 15 C 1.38694 * 120.07680 * 34.59717 * 14 13 11 16 16 C 1.38201 * 120.02389 * 179.97438 * 15 14 13 17 17 C 1.38542 * 120.17288 * 0.02562 * 16 15 14 18 18 F 1.35106 * 119.92587 * 180.02562 * 17 16 15 19 19 C 1.38342 * 120.15236 * 359.97438 * 17 16 15 20 20 C 1.38743 * 119.97715 * 0.02562 * 19 17 16 21 21 O 1.35782 * 120.08583 * 180.02562 * 20 19 17 22 22 C 1.34801 * 117.00083 * 354.55773 * 21 20 19 23 23 H 1.07996 * 120.00317 * 5.03429 * 22 21 20 24 24 C 1.38638 * 119.99920 * 185.04010 * 22 21 20 25 25 N 1.31577 * 120.00047 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00081 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47303 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.47106 * 120.00054 * 26 24 22 29 29 H 1.48497 * 109.47415 * 239.99953 * 26 24 22 30 30 H 1.08997 * 109.46642 * 288.74368 * 1 2 3 31 31 H 1.08999 * 109.47166 * 48.74483 * 1 2 3 32 32 H 1.08995 * 109.46960 * 168.74283 * 1 2 3 33 33 H 1.09002 * 109.47173 * 191.25059 * 3 2 1 34 34 H 1.08996 * 109.47599 * 311.25204 * 3 2 1 35 35 H 1.08998 * 109.46750 * 71.25347 * 3 2 1 36 36 H 0.96700 * 113.99873 * 182.93628 * 6 4 2 37 37 H 1.08996 * 113.62128 * 220.09328 * 7 4 2 38 38 H 1.09007 * 113.68966 * 89.19613 * 7 4 2 39 39 H 0.96998 * 119.99940 * 23.47194 * 10 8 2 40 40 H 0.96989 * 120.00361 * 355.63167 * 13 11 10 41 41 H 1.08002 * 119.98979 * 359.95919 * 15 14 13 42 42 H 1.07999 * 119.91287 * 180.02562 * 16 15 14 43 43 H 1.08002 * 120.01224 * 180.27777 * 19 17 16 44 44 H 0.96998 * 119.99906 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1256 1.4093 0.0000 4 6 2.1466 -0.9314 -1.0595 5 1 3.1594 -0.6521 -1.3501 6 8 1.2932 -1.1694 -2.1807 7 6 2.0950 -2.0439 0.0010 8 6 2.1460 -0.9291 1.0593 9 1 3.1586 -0.6492 1.3499 10 7 1.2704 -1.1705 2.2086 11 6 1.7984 -1.5421 3.3917 12 8 3.0015 -1.6765 3.5051 13 7 0.9929 -1.7637 4.4493 14 6 1.5314 -2.2381 5.6529 15 6 2.7974 -1.8378 6.0536 16 6 3.3271 -2.3059 7.2411 17 6 2.5969 -3.1760 8.0343 18 9 3.1195 -3.6301 9.1945 19 6 1.3334 -3.5800 7.6416 20 6 0.7955 -3.1139 6.4506 21 8 -0.4446 -3.5087 6.0633 22 6 -1.0550 -4.4408 6.8221 23 1 -0.5927 -4.7793 7.7375 24 6 -2.2761 -4.9651 6.4272 25 7 -2.8391 -4.5533 5.3115 26 14 -3.1216 -6.2574 7.4782 27 1 -2.2878 -6.5472 8.6724 28 1 -4.4485 -5.7515 7.9125 29 1 -3.3009 -7.5003 6.6856 30 1 -0.3632 0.3302 0.9732 31 1 -0.3633 0.6776 -0.7726 32 1 -0.3633 -1.0079 -0.2006 33 1 3.1954 1.3516 -0.2005 34 1 1.6429 2.0078 -0.7726 35 1 1.9627 1.8725 0.9732 36 1 1.6573 -1.7891 -2.8276 37 1 2.9747 -2.6875 0.0020 38 1 1.1602 -2.6046 0.0024 39 1 0.3107 -1.0630 2.1182 40 1 0.0405 -1.5949 4.3773 41 1 3.3695 -1.1601 5.4373 42 1 4.3130 -1.9926 7.5516 43 1 0.7643 -4.2548 8.2638 44 1 -3.6932 -4.9204 5.0350 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189146804.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:49 Heat of formation + Delta-G solvation = -122.365162 kcal Electronic energy + Delta-G solvation = -29396.192395 eV Core-core repulsion = 25035.942063 eV Total energy + Delta-G solvation = -4360.250331 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.82102 -41.98733 -41.13435 -40.04127 -38.05603 -36.45198 -35.54823 -34.31253 -34.19754 -31.49214 -31.05980 -29.77778 -28.41182 -27.40080 -25.46455 -23.99041 -23.58840 -23.13830 -21.84596 -20.20760 -19.99092 -19.65167 -18.90824 -18.56623 -18.01342 -17.12805 -16.96396 -16.60634 -16.47493 -16.28661 -16.07335 -15.94884 -15.52619 -15.40713 -15.30818 -15.21286 -14.84587 -14.24726 -14.04610 -13.94119 -13.71200 -13.53189 -13.43379 -13.23491 -13.04579 -12.99240 -12.63781 -12.56586 -12.33973 -12.12720 -12.04511 -11.73714 -11.65154 -11.39075 -11.24381 -11.00509 -10.83083 -10.66964 -10.03589 -9.54491 -8.73701 -8.51602 -6.17193 0.21696 0.47060 1.36785 1.42477 1.52784 1.58882 2.02791 2.13592 2.68690 3.01398 3.08967 3.21246 3.29251 3.33725 3.46456 3.66929 3.81765 3.91691 3.95669 4.17116 4.24178 4.36942 4.45547 4.49610 4.61689 4.63140 4.78987 4.91064 4.94529 4.95333 5.02121 5.04711 5.06104 5.12525 5.23107 5.30500 5.34022 5.38373 5.41968 5.53720 5.60600 5.91221 5.94478 6.08302 6.91366 6.93463 6.94502 7.45288 7.63349 8.69331 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010493 B = 0.003303 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.908590 B = 8474.500597 C =10624.429654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.077 4.077 3 C -0.135 4.135 4 C 0.100 3.900 5 H 0.106 0.894 6 O -0.567 6.567 7 C -0.187 4.187 8 C 0.144 3.856 9 H 0.112 0.888 10 N -0.718 5.718 11 C 0.704 3.296 12 O -0.611 6.611 13 N -0.667 5.667 14 C 0.080 3.920 15 C -0.051 4.051 16 C -0.203 4.203 17 C 0.122 3.878 18 F -0.145 7.145 19 C -0.264 4.264 20 C 0.131 3.869 21 O -0.203 6.203 22 C -0.415 4.415 23 H 0.099 0.901 24 C -0.009 4.009 25 N -0.905 5.905 26 Si 1.011 2.989 27 H -0.257 1.257 28 H -0.267 1.267 29 H -0.270 1.270 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.395 0.605 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.407 0.593 40 H 0.412 0.588 41 H 0.154 0.846 42 H 0.158 0.842 43 H 0.136 0.864 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.013 9.008 -11.203 16.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.078 4.078 3 C -0.192 4.192 4 C 0.040 3.960 5 H 0.124 0.876 6 O -0.375 6.375 7 C -0.226 4.226 8 C 0.039 3.961 9 H 0.130 0.870 10 N -0.373 5.373 11 C 0.405 3.595 12 O -0.491 6.491 13 N -0.314 5.314 14 C -0.016 4.016 15 C -0.071 4.071 16 C -0.222 4.222 17 C 0.102 3.898 18 F -0.123 7.123 19 C -0.285 4.285 20 C 0.077 3.923 21 O -0.108 6.108 22 C -0.491 4.491 23 H 0.116 0.884 24 C -0.208 4.208 25 N -0.542 5.542 26 Si 0.831 3.169 27 H -0.180 1.180 28 H -0.192 1.192 29 H -0.195 1.195 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.245 0.755 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.244 0.756 40 H 0.248 0.752 41 H 0.172 0.828 42 H 0.176 0.824 43 H 0.153 0.847 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.366 9.331 -11.127 16.759 hybrid contribution -1.097 -1.304 0.479 1.770 sum 7.269 8.027 -10.649 15.187 Atomic orbital electron populations 1.21394 0.92434 1.02469 1.01861 1.22418 0.97061 0.95380 0.92901 1.21747 1.01171 0.93908 1.02366 1.23237 0.94144 0.94165 0.84417 0.87613 1.86466 1.47498 1.68577 1.34918 1.24178 1.02914 0.98300 0.97226 1.22330 0.94902 0.96506 0.82397 0.87019 1.45014 1.11078 1.72861 1.08322 1.16021 0.85015 0.77880 0.80592 1.90825 1.13765 1.60253 1.84279 1.42220 1.11586 1.68017 1.09555 1.16900 0.95542 1.01223 0.87940 1.20880 0.93018 0.98503 0.94733 1.20882 1.02434 1.02838 0.96090 1.17454 0.92156 0.97175 0.83035 1.91429 1.86517 1.87863 1.46536 1.20918 0.97565 1.10021 1.00023 1.19143 0.86746 0.93193 0.93195 1.83896 1.23384 1.52944 1.50621 1.21779 1.03827 1.17812 1.05657 0.88372 1.26368 0.96315 1.00078 0.98086 1.70128 1.17969 1.43133 1.22984 0.84621 0.78144 0.76469 0.77641 1.18009 1.19159 1.19540 0.92195 0.91204 0.92732 0.91192 0.91363 0.92411 0.75546 0.90790 0.90117 0.75609 0.75166 0.82821 0.82412 0.84678 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.31 7.46 71.98 0.54 -1.77 16 2 C -0.08 -1.34 1.35 -51.60 -0.07 -1.41 16 3 C -0.13 -1.98 9.20 71.98 0.66 -1.32 16 4 C 0.10 1.57 4.63 31.18 0.14 1.72 16 5 H 0.11 1.23 7.97 -2.38 -0.02 1.22 16 6 O -0.57 -8.98 12.77 -148.98 -1.90 -10.88 16 7 C -0.19 -3.85 7.36 31.12 0.23 -3.62 16 8 C 0.14 3.22 3.67 45.52 0.17 3.39 16 9 H 0.11 2.67 7.46 -2.38 -0.02 2.65 16 10 N -0.72 -19.23 5.25 -455.29 -2.39 -21.62 16 11 C 0.70 24.49 8.41 179.05 1.51 26.00 16 12 O -0.61 -23.91 13.37 -4.01 -0.05 -23.96 16 13 N -0.67 -25.06 5.20 -316.70 -1.65 -26.71 16 14 C 0.08 3.33 6.33 38.22 0.24 3.57 16 15 C -0.05 -1.89 8.70 22.37 0.19 -1.70 16 16 C -0.20 -7.06 10.02 22.33 0.22 -6.83 16 17 C 0.12 4.72 7.29 22.37 0.16 4.89 16 18 F -0.14 -5.30 17.26 44.97 0.78 -4.52 16 19 C -0.26 -11.69 9.14 22.42 0.20 -11.48 16 20 C 0.13 6.19 6.66 22.68 0.15 6.34 16 21 O -0.20 -11.04 9.31 -22.80 -0.21 -11.25 16 22 C -0.41 -22.65 9.49 67.92 0.64 -22.00 16 23 H 0.10 5.05 5.20 -2.91 -0.02 5.04 16 24 C -0.01 -0.47 5.49 84.83 0.47 -0.01 16 25 N -0.91 -51.05 13.67 21.61 0.30 -50.75 16 26 Si 1.01 40.97 29.55 68.60 2.03 43.00 16 27 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 28 H -0.27 -10.33 7.11 99.48 0.71 -9.63 16 29 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 30 H 0.06 1.07 7.07 -2.39 -0.02 1.05 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.05 1.14 7.20 -2.39 -0.02 1.12 16 33 H 0.07 0.87 7.95 -2.39 -0.02 0.85 16 34 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.39 3.05 9.12 -74.06 -0.68 2.38 16 37 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.08 1.91 7.67 -2.38 -0.02 1.89 16 39 H 0.41 9.82 6.63 -92.71 -0.62 9.21 16 40 H 0.41 15.01 8.58 -92.72 -0.80 14.21 16 41 H 0.15 5.48 6.19 -2.91 -0.02 5.46 16 42 H 0.16 4.41 8.06 -2.91 -0.02 4.38 16 43 H 0.14 6.07 5.64 -2.91 -0.02 6.05 16 44 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -67.58 368.51 1.37 -66.21 By element: Atomic # 1 Polarization: 45.75 SS G_CDS: -0.99 Total: 44.75 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: 5.46 Total: -4.25 kcal Atomic # 7 Polarization: -95.34 SS G_CDS: -3.74 Total: -99.08 kcal Atomic # 8 Polarization: -43.94 SS G_CDS: -2.17 Total: -46.10 kcal Atomic # 9 Polarization: -5.30 SS G_CDS: 0.78 Total: -4.52 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Total: -67.58 1.37 -66.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189146804.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.155 kcal (2) G-P(sol) polarization free energy of solvation -67.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds