Wall clock time and date at job start Tue Mar 31 2020 20:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31571 * 1 3 3 Si 1.86797 * 120.00054 * 2 1 4 4 H 1.48500 * 109.47345 * 239.99875 * 3 2 1 5 5 H 1.48500 * 109.47186 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47269 * 120.00105 * 3 2 1 7 7 C 1.38634 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00199 * 180.02562 * 7 2 1 9 9 O 1.34806 * 120.00140 * 0.02562 * 7 2 1 10 10 C 1.35779 * 117.00123 * 174.95964 * 9 7 2 11 11 C 1.38736 * 120.08666 * 5.42905 * 10 9 7 12 12 C 1.38349 * 119.97318 * 180.02562 * 11 10 9 13 13 F 1.35099 * 119.92276 * 180.02562 * 12 11 10 14 14 C 1.38543 * 120.15047 * 0.02562 * 12 11 10 15 15 C 1.38193 * 120.17584 * 359.68449 * 14 12 11 16 16 C 1.38689 * 120.02406 * 0.59145 * 15 14 12 17 17 N 1.40135 * 120.08031 * 179.70227 * 16 15 14 18 18 C 1.34780 * 119.99783 * 34.59620 * 17 16 15 19 19 O 1.21595 * 120.00007 * 355.63331 * 18 17 16 20 20 N 1.34777 * 119.99812 * 175.63194 * 18 17 16 21 21 C 1.46502 * 119.99796 * 180.02562 * 20 18 17 22 22 C 1.53001 * 109.46945 * 179.97438 * 21 20 18 23 23 H 1.09001 * 110.02074 * 53.60508 * 22 21 20 24 24 C 1.54269 * 110.02706 * 292.16250 * 22 21 20 25 25 C 1.54895 * 104.19499 * 217.10461 * 24 22 21 26 26 C 1.54897 * 102.74468 * 37.94582 * 25 24 22 27 27 H 1.08990 * 110.48987 * 80.73735 * 26 25 24 28 28 O 1.42898 * 110.48446 * 203.37965 * 26 25 24 29 29 C 1.53876 * 110.03208 * 174.99996 * 22 21 20 30 30 H 0.97005 * 119.99819 * 0.02562 * 1 2 3 31 31 H 1.07993 * 120.01366 * 0.04813 * 11 10 9 32 32 H 1.08004 * 119.90472 * 179.97438 * 14 12 11 33 33 H 1.08005 * 119.99199 * 180.32020 * 15 14 12 34 34 H 0.96999 * 120.00043 * 214.60081 * 17 16 15 35 35 H 0.96997 * 119.99874 * 0.26851 * 20 18 17 36 36 H 1.09001 * 109.46452 * 299.99088 * 21 20 18 37 37 H 1.08994 * 109.47100 * 59.99307 * 21 20 18 38 38 H 1.08993 * 110.49026 * 335.78372 * 24 22 21 39 39 H 1.08995 * 110.48395 * 98.43287 * 24 22 21 40 40 H 1.08996 * 110.75752 * 279.63661 * 25 24 22 41 41 H 1.08997 * 110.91785 * 156.32789 * 25 24 22 42 42 H 0.96698 * 114.00584 * 294.77379 * 28 26 25 43 43 H 1.09002 * 110.02604 * 238.56792 * 29 22 21 44 44 H 1.09000 * 110.03020 * 359.97438 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1035 1.6964 -1.2125 5 1 1.2847 2.7464 0.0006 6 1 3.1035 1.6964 1.2125 7 6 2.0089 -1.2006 -0.0005 8 1 3.0890 -1.2006 -0.0001 9 8 1.3349 -2.3681 -0.0016 10 6 2.0705 -3.5044 -0.1083 11 6 3.4563 -3.4395 -0.0967 12 6 4.2034 -4.5988 -0.2062 13 9 5.5528 -4.5345 -0.1943 14 6 3.5709 -5.8254 -0.3280 15 6 2.1909 -5.8978 -0.3343 16 6 1.4348 -4.7397 -0.2308 17 7 0.0353 -4.8112 -0.2433 18 6 -0.5908 -5.8619 0.3229 19 8 0.0585 -6.7858 0.7737 20 7 -1.9367 -5.8885 0.3892 21 6 -2.6173 -7.0303 1.0050 22 6 -4.1306 -6.8113 0.9519 23 1 -4.4417 -6.6024 -0.0717 24 6 -4.5278 -5.6410 1.8753 25 6 -5.8820 -6.0810 2.4850 26 6 -5.6788 -7.6003 2.7081 27 1 -5.1200 -7.7796 3.6266 28 8 -6.9390 -8.2728 2.7487 29 6 -4.8624 -8.0570 1.4815 30 1 -0.4850 0.8401 -0.0004 31 1 3.9516 -2.4846 -0.0019 32 1 4.1581 -6.7278 -0.4137 33 1 1.7009 -6.8561 -0.4242 34 1 -0.4827 -4.1045 -0.6594 35 1 -2.4548 -5.1533 0.0260 36 1 -2.3624 -7.9408 0.4627 37 1 -2.3004 -7.1252 2.0436 38 1 -3.7831 -5.5039 2.6593 39 1 -4.6491 -4.7242 1.2985 40 1 -6.6979 -5.8992 1.7855 41 1 -6.0661 -5.5729 3.4315 42 1 -7.4939 -8.0235 3.5003 43 1 -5.5293 -8.4521 0.7151 44 1 -4.1394 -8.8177 1.7759 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189759275.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:54 Heat of formation + Delta-G solvation = -134.672748 kcal Electronic energy + Delta-G solvation = -28682.414459 eV Core-core repulsion = 24321.630430 eV Total energy + Delta-G solvation = -4360.784028 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -48.23424 -40.29202 -39.31988 -38.60842 -36.54832 -35.97370 -34.01247 -33.88321 -32.41041 -29.97650 -29.35697 -28.59614 -27.73290 -25.50891 -24.53694 -22.42481 -21.65833 -21.16263 -20.55227 -19.95795 -18.34290 -18.16163 -17.95834 -17.61013 -16.78590 -15.86848 -15.67431 -15.26841 -15.20343 -14.98417 -14.85906 -14.51724 -14.30108 -14.24611 -13.94138 -13.63768 -13.50992 -13.49080 -13.20577 -12.78169 -12.61280 -12.32510 -12.12450 -11.81673 -11.66257 -11.46008 -11.36132 -11.13878 -10.97718 -10.91892 -10.77374 -10.73152 -10.57587 -10.17785 -9.87203 -9.75987 -9.43954 -8.96762 -8.95025 -7.85861 -7.08839 -6.60879 -4.18617 1.87183 2.14204 2.90483 3.06924 3.07454 3.09822 3.48514 3.83024 3.85114 4.23702 4.30569 4.36836 4.49262 4.54825 4.87371 4.91676 4.95813 5.03246 5.13412 5.15194 5.19902 5.29349 5.39726 5.57815 5.59144 5.65791 5.68788 5.74388 5.75899 5.92370 5.94573 6.05260 6.10268 6.22528 6.53147 6.63810 6.71161 6.92507 6.94998 7.08713 7.16204 7.31633 7.32621 7.68132 7.83512 8.28236 8.84434 8.87932 9.47111 10.56117 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010613 B = 0.002806 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.567431 B = 9976.123421 C =12383.059259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.044 3.956 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.393 4.393 8 H 0.094 0.906 9 O -0.168 6.168 10 C 0.157 3.843 11 C -0.258 4.258 12 C 0.127 3.873 13 F -0.152 7.152 14 C -0.228 4.228 15 C -0.050 4.050 16 C 0.078 3.922 17 N -0.665 5.665 18 C 0.704 3.296 19 O -0.587 6.587 20 N -0.746 5.746 21 C 0.147 3.853 22 C -0.102 4.102 23 H 0.083 0.917 24 C -0.121 4.121 25 C -0.157 4.157 26 C 0.096 3.904 27 H 0.064 0.936 28 O -0.567 6.567 29 C -0.110 4.110 30 H 0.272 0.728 31 H 0.143 0.857 32 H 0.122 0.878 33 H 0.143 0.857 34 H 0.411 0.589 35 H 0.398 0.602 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.377 0.623 43 H 0.079 0.921 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.619 -10.293 2.180 14.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.161 4.161 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.469 4.469 8 H 0.111 0.889 9 O -0.071 6.071 10 C 0.101 3.899 11 C -0.279 4.279 12 C 0.108 3.892 13 F -0.131 7.131 14 C -0.248 4.248 15 C -0.071 4.071 16 C -0.017 4.017 17 N -0.311 5.311 18 C 0.404 3.596 19 O -0.465 6.465 20 N -0.402 5.402 21 C 0.023 3.977 22 C -0.121 4.121 23 H 0.102 0.898 24 C -0.159 4.159 25 C -0.195 4.195 26 C 0.037 3.963 27 H 0.082 0.918 28 O -0.373 6.373 29 C -0.148 4.148 30 H 0.082 0.918 31 H 0.160 0.840 32 H 0.140 0.860 33 H 0.160 0.840 34 H 0.246 0.754 35 H 0.232 0.768 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.224 0.776 43 H 0.098 0.902 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.238 -11.184 2.092 15.306 hybrid contribution 0.087 1.964 0.238 1.980 sum -10.151 -9.220 2.330 13.910 Atomic orbital electron populations 1.70000 1.05917 1.28025 1.45556 1.25262 0.95898 0.98801 0.96179 0.85760 0.78759 0.79489 0.79400 1.19352 1.20213 1.19395 1.21305 0.91969 0.80478 1.53111 0.88905 1.83931 1.33846 1.11226 1.78111 1.18828 0.89485 0.87290 0.94345 1.20838 0.93410 0.98420 1.15250 1.17459 0.75923 0.94348 1.01512 1.91408 1.30167 1.97381 1.94113 1.20489 0.94635 0.95810 1.13908 1.20676 0.92120 0.97465 0.96829 1.16649 0.81285 0.91537 1.12214 1.42186 1.05212 1.24408 1.59343 1.15885 0.81758 0.83055 0.78852 1.90872 1.64683 1.37114 1.53849 1.45047 1.04870 1.24644 1.65629 1.21312 0.89650 0.88312 0.98431 1.21988 0.94084 0.95433 1.00640 0.89830 1.22403 0.96608 0.97792 0.99100 1.23198 0.98569 0.96213 1.01485 1.22728 0.84560 0.90722 0.98246 0.91842 1.86502 1.29921 1.68530 1.52311 1.22043 0.98232 0.97231 0.97255 0.91840 0.83998 0.85967 0.83953 0.75357 0.76812 0.91573 0.91486 0.90691 0.90859 0.90554 0.91310 0.77554 0.90219 0.90565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.22 13.67 55.48 0.76 -22.46 16 2 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 3 Si 0.94 19.57 29.55 -169.99 -5.02 14.55 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.39 -10.30 9.49 30.88 0.29 -10.01 16 8 H 0.09 2.29 5.20 -52.48 -0.27 2.02 16 9 O -0.17 -4.37 9.32 0.03 0.00 -4.37 16 10 C 0.16 3.61 6.66 -38.94 -0.26 3.35 16 11 C -0.26 -5.65 9.14 -39.36 -0.36 -6.01 16 12 C 0.13 2.56 7.29 -39.43 -0.29 2.28 16 13 F -0.15 -2.92 17.26 2.25 0.04 -2.88 16 14 C -0.23 -4.28 10.02 -39.49 -0.40 -4.68 16 15 C -0.05 -0.98 8.70 -39.43 -0.34 -1.32 16 16 C 0.08 1.63 6.33 -83.44 -0.53 1.10 16 17 N -0.66 -12.21 5.20 -14.07 -0.07 -12.29 16 18 C 0.70 12.16 8.41 -86.92 -0.73 11.43 16 19 O -0.59 -11.76 13.76 5.28 0.07 -11.68 16 20 N -0.75 -9.56 5.41 -65.22 -0.35 -9.91 16 21 C 0.15 1.60 4.73 -4.04 -0.02 1.58 16 22 C -0.10 -0.86 2.96 -89.50 -0.26 -1.12 16 23 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 24 C -0.12 -1.02 6.09 -25.07 -0.15 -1.17 16 25 C -0.16 -1.17 6.62 -24.73 -0.16 -1.33 16 26 C 0.10 0.75 4.23 -25.07 -0.11 0.65 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 O -0.57 -4.65 13.37 -35.23 -0.47 -5.12 16 29 C -0.11 -0.90 6.21 -25.61 -0.16 -1.06 16 30 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 31 H 0.14 3.09 5.64 -52.49 -0.30 2.80 16 32 H 0.12 1.98 8.06 -52.48 -0.42 1.56 16 33 H 0.14 2.70 6.19 -52.48 -0.32 2.38 16 34 H 0.41 7.14 8.59 -40.82 -0.35 6.79 16 35 H 0.40 4.32 8.38 -40.82 -0.34 3.98 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.80 8.00 -51.93 -0.42 0.38 16 38 H 0.07 0.71 7.76 -51.93 -0.40 0.30 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.38 1.55 9.12 45.56 0.42 1.96 16 43 H 0.08 0.68 8.07 -51.93 -0.42 0.26 16 44 H 0.08 0.61 7.67 -51.93 -0.40 0.21 16 LS Contribution 371.06 15.07 5.59 5.59 Total: -1.00 -31.21 371.06 -7.93 -39.14 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -4.90 Total: 14.72 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -3.57 Total: -5.29 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: 0.33 Total: -44.66 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.40 Total: -21.17 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.04 Total: -2.88 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.21 -7.93 -39.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189759275.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.532 kcal (2) G-P(sol) polarization free energy of solvation -31.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds