Wall clock time and date at job start Tue Mar 31 2020 20:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31571 * 1 3 3 Si 1.86797 * 120.00054 * 2 1 4 4 H 1.48500 * 109.47345 * 239.99875 * 3 2 1 5 5 H 1.48500 * 109.47186 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47269 * 120.00105 * 3 2 1 7 7 C 1.38634 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00199 * 180.02562 * 7 2 1 9 9 O 1.34806 * 120.00140 * 0.02562 * 7 2 1 10 10 C 1.35779 * 117.00123 * 174.95964 * 9 7 2 11 11 C 1.38736 * 120.08666 * 5.42905 * 10 9 7 12 12 C 1.38349 * 119.97318 * 180.02562 * 11 10 9 13 13 F 1.35099 * 119.92276 * 180.02562 * 12 11 10 14 14 C 1.38543 * 120.15047 * 0.02562 * 12 11 10 15 15 C 1.38193 * 120.17584 * 359.68449 * 14 12 11 16 16 C 1.38689 * 120.02406 * 0.59145 * 15 14 12 17 17 N 1.40135 * 120.08031 * 179.70227 * 16 15 14 18 18 C 1.34780 * 119.99783 * 34.59620 * 17 16 15 19 19 O 1.21595 * 120.00007 * 355.63331 * 18 17 16 20 20 N 1.34777 * 119.99812 * 175.63194 * 18 17 16 21 21 C 1.46502 * 119.99796 * 180.02562 * 20 18 17 22 22 C 1.53001 * 109.46945 * 179.97438 * 21 20 18 23 23 H 1.09001 * 110.02074 * 53.60508 * 22 21 20 24 24 C 1.54269 * 110.02706 * 292.16250 * 22 21 20 25 25 C 1.54895 * 104.19499 * 217.10461 * 24 22 21 26 26 C 1.54897 * 102.74468 * 37.94582 * 25 24 22 27 27 H 1.08990 * 110.48987 * 80.73735 * 26 25 24 28 28 O 1.42898 * 110.48446 * 203.37965 * 26 25 24 29 29 C 1.53876 * 110.03208 * 174.99996 * 22 21 20 30 30 H 0.97005 * 119.99819 * 0.02562 * 1 2 3 31 31 H 1.07993 * 120.01366 * 0.04813 * 11 10 9 32 32 H 1.08004 * 119.90472 * 179.97438 * 14 12 11 33 33 H 1.08005 * 119.99199 * 180.32020 * 15 14 12 34 34 H 0.96999 * 120.00043 * 214.60081 * 17 16 15 35 35 H 0.96997 * 119.99874 * 0.26851 * 20 18 17 36 36 H 1.09001 * 109.46452 * 299.99088 * 21 20 18 37 37 H 1.08994 * 109.47100 * 59.99307 * 21 20 18 38 38 H 1.08993 * 110.49026 * 335.78372 * 24 22 21 39 39 H 1.08995 * 110.48395 * 98.43287 * 24 22 21 40 40 H 1.08996 * 110.75752 * 279.63661 * 25 24 22 41 41 H 1.08997 * 110.91785 * 156.32789 * 25 24 22 42 42 H 0.96698 * 114.00584 * 294.77379 * 28 26 25 43 43 H 1.09002 * 110.02604 * 238.56792 * 29 22 21 44 44 H 1.09000 * 110.03020 * 359.97438 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1035 1.6964 -1.2125 5 1 1.2847 2.7464 0.0006 6 1 3.1035 1.6964 1.2125 7 6 2.0089 -1.2006 -0.0005 8 1 3.0890 -1.2006 -0.0001 9 8 1.3349 -2.3681 -0.0016 10 6 2.0705 -3.5044 -0.1083 11 6 3.4563 -3.4395 -0.0967 12 6 4.2034 -4.5988 -0.2062 13 9 5.5528 -4.5345 -0.1943 14 6 3.5709 -5.8254 -0.3280 15 6 2.1909 -5.8978 -0.3343 16 6 1.4348 -4.7397 -0.2308 17 7 0.0353 -4.8112 -0.2433 18 6 -0.5908 -5.8619 0.3229 19 8 0.0585 -6.7858 0.7737 20 7 -1.9367 -5.8885 0.3892 21 6 -2.6173 -7.0303 1.0050 22 6 -4.1306 -6.8113 0.9519 23 1 -4.4417 -6.6024 -0.0717 24 6 -4.5278 -5.6410 1.8753 25 6 -5.8820 -6.0810 2.4850 26 6 -5.6788 -7.6003 2.7081 27 1 -5.1200 -7.7796 3.6266 28 8 -6.9390 -8.2728 2.7487 29 6 -4.8624 -8.0570 1.4815 30 1 -0.4850 0.8401 -0.0004 31 1 3.9516 -2.4846 -0.0019 32 1 4.1581 -6.7278 -0.4137 33 1 1.7009 -6.8561 -0.4242 34 1 -0.4827 -4.1045 -0.6594 35 1 -2.4548 -5.1533 0.0260 36 1 -2.3624 -7.9408 0.4627 37 1 -2.3004 -7.1252 2.0436 38 1 -3.7831 -5.5039 2.6593 39 1 -4.6491 -4.7242 1.2985 40 1 -6.6979 -5.8992 1.7855 41 1 -6.0661 -5.5729 3.4315 42 1 -7.4939 -8.0235 3.5003 43 1 -5.5293 -8.4521 0.7151 44 1 -4.1394 -8.8177 1.7759 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189759275.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:53 Heat of formation + Delta-G solvation = -156.663842 kcal Electronic energy + Delta-G solvation = -28683.368064 eV Core-core repulsion = 24321.630430 eV Total energy + Delta-G solvation = -4361.737634 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.81659 -41.74118 -40.52982 -39.75709 -38.11425 -36.88205 -35.53273 -34.91621 -34.29714 -31.17260 -30.76895 -29.69944 -28.79402 -27.37241 -25.48968 -24.01098 -23.21762 -22.04808 -21.66971 -20.82276 -20.12751 -19.63731 -19.11558 -18.61434 -18.25830 -17.17324 -16.94953 -16.69880 -16.54872 -16.47806 -16.09493 -15.93674 -15.72378 -15.35987 -15.23104 -14.95558 -14.90544 -14.70653 -14.50328 -14.00962 -13.75750 -13.56742 -13.41813 -13.31316 -12.99694 -12.55927 -12.50930 -12.34323 -12.17150 -12.13835 -11.87272 -11.64914 -11.61319 -11.46131 -11.32348 -11.00441 -10.81046 -10.77739 -10.12498 -9.53096 -8.73177 -8.49967 -6.15944 0.22739 0.48017 1.37750 1.45840 1.51035 1.61783 2.06578 2.15176 2.69700 3.06659 3.11618 3.19167 3.35693 3.46935 3.55476 3.68792 3.79612 3.96316 4.17814 4.25696 4.35880 4.38197 4.44849 4.49907 4.58440 4.60945 4.76531 4.82356 4.88708 4.95991 4.97407 5.03663 5.09177 5.22574 5.24106 5.30014 5.31670 5.34894 5.38896 5.50445 5.59305 5.92030 5.95461 6.09599 6.91435 6.94470 6.96090 7.47580 7.64314 8.70022 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010613 B = 0.002806 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.567431 B = 9976.123421 C =12383.059259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.007 4.007 3 Si 1.009 2.991 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.263 1.263 7 C -0.417 4.417 8 H 0.098 0.902 9 O -0.201 6.201 10 C 0.130 3.870 11 C -0.264 4.264 12 C 0.121 3.879 13 F -0.145 7.145 14 C -0.204 4.204 15 C -0.051 4.051 16 C 0.079 3.921 17 N -0.666 5.666 18 C 0.702 3.298 19 O -0.614 6.614 20 N -0.728 5.728 21 C 0.148 3.852 22 C -0.090 4.090 23 H 0.093 0.907 24 C -0.123 4.123 25 C -0.150 4.150 26 C 0.096 3.904 27 H 0.068 0.932 28 O -0.583 6.583 29 C -0.110 4.110 30 H 0.275 0.725 31 H 0.136 0.864 32 H 0.157 0.843 33 H 0.153 0.847 34 H 0.413 0.587 35 H 0.409 0.591 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.394 0.606 43 H 0.077 0.923 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.579 -11.108 2.169 15.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.207 4.207 3 Si 0.829 3.171 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.187 1.187 7 C -0.493 4.493 8 H 0.116 0.884 9 O -0.106 6.106 10 C 0.076 3.924 11 C -0.285 4.285 12 C 0.101 3.899 13 F -0.124 7.124 14 C -0.224 4.224 15 C -0.072 4.072 16 C -0.017 4.017 17 N -0.313 5.313 18 C 0.402 3.598 19 O -0.495 6.495 20 N -0.384 5.384 21 C 0.024 3.976 22 C -0.109 4.109 23 H 0.111 0.889 24 C -0.161 4.161 25 C -0.188 4.188 26 C 0.037 3.963 27 H 0.086 0.914 28 O -0.391 6.391 29 C -0.148 4.148 30 H 0.084 0.916 31 H 0.154 0.846 32 H 0.175 0.825 33 H 0.170 0.830 34 H 0.250 0.750 35 H 0.245 0.755 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.244 0.756 43 H 0.096 0.904 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.231 -12.031 2.086 15.930 hybrid contribution 0.093 1.957 0.249 1.975 sum -10.138 -10.074 2.335 14.481 Atomic orbital electron populations 1.70108 1.07450 1.28983 1.47474 1.26338 0.96833 1.01995 0.95531 0.84765 0.77592 0.74976 0.79725 1.18441 1.19435 1.18738 1.21706 0.92526 0.81205 1.53888 0.88432 1.83910 1.34589 1.11749 1.80335 1.19172 0.90149 0.87448 0.95590 1.20920 0.93329 0.99070 1.15171 1.17453 0.76223 0.94240 1.01935 1.91426 1.29507 1.97354 1.94072 1.20878 0.94536 0.96476 1.10471 1.20866 0.92477 0.97274 0.96576 1.16901 0.82624 0.91224 1.10911 1.42207 1.04546 1.24905 1.59679 1.16018 0.82912 0.82291 0.78548 1.90840 1.65658 1.37957 1.55014 1.45006 1.03394 1.25451 1.64561 1.21448 0.91051 0.87479 0.97621 1.21894 0.92056 0.95713 1.01262 0.88880 1.22401 0.97000 0.97849 0.98853 1.23145 0.97776 0.96040 1.01823 1.22716 0.84608 0.90766 0.98166 0.91389 1.86458 1.30230 1.68817 1.53589 1.22038 0.98272 0.96980 0.97512 0.91633 0.84612 0.82501 0.82951 0.75044 0.75507 0.91557 0.92386 0.91800 0.90758 0.90555 0.90448 0.75604 0.90383 0.90447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.03 13.67 21.61 0.30 -49.74 16 2 C -0.01 -0.37 5.49 84.83 0.47 0.09 16 3 Si 1.01 40.33 29.55 68.60 2.03 42.36 16 4 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 5 H -0.27 -10.32 7.11 99.48 0.71 -9.62 16 6 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 7 C -0.42 -22.52 9.49 67.91 0.64 -21.87 16 8 H 0.10 4.95 5.20 -2.91 -0.02 4.94 16 9 O -0.20 -10.78 9.32 -22.82 -0.21 -10.99 16 10 C 0.13 6.11 6.66 22.69 0.15 6.27 16 11 C -0.26 -11.61 9.14 22.42 0.20 -11.40 16 12 C 0.12 4.71 7.29 22.37 0.16 4.87 16 13 F -0.14 -5.30 17.26 44.97 0.78 -4.52 16 14 C -0.20 -7.13 10.02 22.33 0.22 -6.91 16 15 C -0.05 -1.92 8.70 22.37 0.19 -1.73 16 16 C 0.08 3.29 6.33 38.22 0.24 3.53 16 17 N -0.67 -24.58 5.20 -316.69 -1.65 -26.23 16 18 C 0.70 23.93 8.41 179.05 1.51 25.43 16 19 O -0.61 -24.14 13.76 -4.02 -0.06 -24.19 16 20 N -0.73 -18.17 5.41 -478.52 -2.59 -20.75 16 21 C 0.15 3.07 4.73 86.38 0.41 3.48 16 22 C -0.09 -1.39 2.96 -10.07 -0.03 -1.42 16 23 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 24 C -0.12 -1.94 6.09 31.67 0.19 -1.75 16 25 C -0.15 -2.01 6.62 31.89 0.21 -1.80 16 26 C 0.10 1.36 4.23 31.67 0.13 1.50 16 27 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 28 O -0.58 -8.62 13.37 -148.98 -1.99 -10.62 16 29 C -0.11 -1.65 6.21 31.32 0.19 -1.46 16 30 H 0.27 14.04 8.31 -92.70 -0.77 13.27 16 31 H 0.14 6.04 5.64 -2.91 -0.02 6.02 16 32 H 0.16 4.42 8.06 -2.91 -0.02 4.40 16 33 H 0.15 5.49 6.19 -2.91 -0.02 5.47 16 34 H 0.41 14.68 8.59 -92.71 -0.80 13.88 16 35 H 0.41 8.56 8.38 -92.71 -0.78 7.78 16 36 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.06 1.35 8.00 -2.39 -0.02 1.33 16 38 H 0.06 1.16 7.76 -2.39 -0.02 1.14 16 39 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.39 2.57 9.12 -74.06 -0.68 1.90 16 43 H 0.08 1.22 8.07 -2.39 -0.02 1.20 16 44 H 0.08 1.14 7.67 -2.39 -0.02 1.12 16 Total: -1.00 -67.35 371.06 0.35 -67.00 By element: Atomic # 1 Polarization: 42.01 SS G_CDS: -1.16 Total: 40.85 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 4.91 Total: -3.17 kcal Atomic # 7 Polarization: -92.78 SS G_CDS: -3.94 Total: -96.71 kcal Atomic # 8 Polarization: -43.55 SS G_CDS: -2.26 Total: -45.80 kcal Atomic # 9 Polarization: -5.30 SS G_CDS: 0.78 Total: -4.52 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal Total: -67.35 0.35 -67.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189759275.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.664 kcal (2) G-P(sol) polarization free energy of solvation -67.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds