Wall clock time and date at job start Tue Mar 31 2020 20:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38322 * 119.88150 * 2 1 4 4 C 1.38017 * 120.12080 * 179.97438 * 3 2 1 5 5 C 1.39336 * 119.87728 * 0.02562 * 4 3 2 6 6 C 1.48404 * 120.11946 * 179.97438 * 5 4 3 7 7 C 1.39444 * 120.46707 * 0.02562 * 6 5 4 8 8 N 1.31793 * 120.91115 * 179.97438 * 7 6 5 9 9 C 1.31723 * 122.01374 * 0.02562 * 8 7 6 10 10 C 1.39579 * 120.83288 * 359.71242 * 9 8 7 11 11 C 1.47860 * 120.50479 * 180.31401 * 10 9 8 12 12 O 1.21547 * 119.99393 * 6.80795 * 11 10 9 13 13 N 1.34777 * 120.00148 * 186.80330 * 11 10 9 14 14 C 1.47062 * 136.05766 * 5.18914 * 13 11 10 15 15 C 1.53755 * 87.88788 * 152.96514 * 14 13 11 16 16 O 1.42899 * 114.39135 * 272.67745 * 15 14 13 17 17 C 1.50694 * 114.26906 * 139.79251 * 15 14 13 18 18 H 1.08005 * 120.00261 * 266.47282 * 17 15 14 19 19 C 1.37875 * 120.00105 * 86.47370 * 17 15 14 20 20 N 1.31514 * 119.99994 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 119.99871 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46957 * 90.00412 * 21 19 17 23 23 H 1.48507 * 109.46732 * 209.99877 * 21 19 17 24 24 H 1.48494 * 109.47281 * 329.99734 * 21 19 17 25 25 C 1.47066 * 136.05673 * 185.56315 * 13 11 10 26 26 C 1.39474 * 120.47308 * 180.02562 * 6 5 4 27 27 C 1.39331 * 119.76094 * 0.25253 * 5 4 3 28 28 C 1.38027 * 119.87648 * 359.46929 * 27 5 4 29 29 H 1.08999 * 109.47208 * 89.99589 * 1 2 3 30 30 H 1.08999 * 109.47637 * 209.99875 * 1 2 3 31 31 H 1.09003 * 109.47010 * 329.99979 * 1 2 3 32 32 H 1.08003 * 119.93576 * 359.97438 * 3 2 1 33 33 H 1.07994 * 120.06096 * 179.97438 * 4 3 2 34 34 H 1.07998 * 119.54413 * 359.97377 * 7 6 5 35 35 H 1.08003 * 119.58139 * 179.97438 * 9 8 7 36 36 H 1.09009 * 113.46848 * 267.69538 * 14 13 11 37 37 H 1.08997 * 113.47049 * 38.13295 * 14 13 11 38 38 H 0.96704 * 113.99949 * 273.58107 * 16 15 14 39 39 H 0.96997 * 119.99851 * 179.97438 * 20 19 17 40 40 H 1.09007 * 113.46530 * 321.86508 * 25 13 11 41 41 H 1.08996 * 113.46717 * 92.29846 * 25 13 11 42 42 H 1.08000 * 120.90200 * 0.02562 * 26 6 5 43 43 H 1.07990 * 120.05899 * 179.74779 * 27 5 4 44 44 H 1.07998 * 119.94092 * 180.27916 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1993 0.0000 4 6 3.5763 1.2051 0.0005 5 6 4.2755 -0.0002 0.0005 6 6 5.7595 -0.0002 0.0005 7 6 6.4666 1.2016 0.0011 8 7 7.7845 1.2118 0.0016 9 6 8.4914 0.1003 0.0011 10 6 7.8639 -1.1465 0.0060 11 6 8.6646 -2.3896 0.0125 12 8 9.8722 -2.3339 0.1383 13 7 8.0552 -3.5844 -0.1211 14 6 6.6850 -4.0510 -0.3809 15 6 7.2953 -5.3182 -1.0022 16 8 7.6079 -5.2023 -2.3918 17 6 6.5629 -6.5900 -0.6605 18 1 6.8788 -7.1849 0.1839 19 6 5.4895 -6.9944 -1.4256 20 7 5.1046 -6.2698 -2.4534 21 14 4.5812 -8.5707 -1.0014 22 1 3.4758 -8.2663 -0.0576 23 1 4.0233 -9.1692 -2.2407 24 1 5.5224 -9.5294 -0.3689 25 6 8.4668 -4.9951 -0.0645 26 6 6.4667 -1.2024 0.0000 27 6 3.5762 -1.2053 -0.0053 28 6 2.1960 -1.1994 0.0000 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6532 2.1329 -0.0004 33 1 4.1134 2.1420 0.0001 34 1 5.9268 2.1370 0.0011 35 1 9.5700 0.1544 0.0011 36 1 6.1130 -4.2449 0.5266 37 1 6.1440 -3.4321 -1.0966 38 1 6.8678 -5.4065 -2.9798 39 1 4.3497 -6.5545 -2.9918 40 1 9.4439 -5.1805 -0.5108 41 1 8.3646 -5.4377 0.9263 42 1 5.9493 -2.1503 -0.0008 43 1 4.1132 -2.1422 -0.0095 44 1 1.6530 -2.1330 0.0000 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193983590.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:34 Heat of formation + Delta-G solvation = 17.935752 kcal Electronic energy + Delta-G solvation = -28541.141971 eV Core-core repulsion = 24617.744769 eV Total energy + Delta-G solvation = -3923.397202 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.73087 -39.58740 -38.91475 -37.36260 -34.32437 -34.04155 -32.52917 -32.27320 -31.07793 -30.68945 -28.74774 -26.79679 -25.74709 -25.49234 -24.36677 -23.28714 -22.21459 -21.17877 -20.21284 -18.90991 -17.65848 -17.25436 -16.87203 -16.47390 -15.93607 -15.50837 -15.25405 -15.02326 -14.89634 -14.70592 -14.29216 -14.08065 -13.77851 -13.76548 -13.53220 -13.25599 -13.12547 -12.64576 -12.60778 -12.39982 -12.30132 -12.10898 -12.00725 -11.65457 -11.48986 -11.15165 -11.09542 -11.04312 -10.57273 -10.37469 -10.15490 -10.01208 -9.55029 -9.46756 -9.28939 -9.06563 -8.87630 -8.48462 -8.14842 -7.97363 -6.49375 -4.60280 0.41514 0.88852 1.29806 1.70666 3.07764 3.12482 3.17038 3.19883 3.34668 3.65814 4.05264 4.10654 4.22300 4.46073 4.58513 4.71108 4.73601 4.77432 4.81504 4.85786 4.95825 5.09083 5.24867 5.34651 5.39887 5.47083 5.48447 5.54304 5.63439 5.75147 5.88086 5.94206 5.96562 6.03996 6.05607 6.24335 6.26598 6.30312 6.43353 6.46591 6.49788 6.51675 6.62187 6.85053 6.98811 7.53828 7.70010 7.83669 8.31028 8.43938 8.57456 9.11636 9.39748 10.57218 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.008062 B = 0.004426 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3472.195342 B = 6325.195655 C = 9426.458032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.085 4.085 3 C -0.120 4.120 4 C -0.107 4.107 5 C -0.047 4.047 6 C -0.104 4.104 7 C 0.121 3.879 8 N -0.485 5.485 9 C 0.151 3.849 10 C -0.165 4.165 11 C 0.582 3.418 12 O -0.554 6.554 13 N -0.627 5.627 14 C 0.059 3.941 15 C 0.244 3.756 16 O -0.569 6.569 17 C -0.535 4.535 18 H 0.074 0.926 19 C 0.074 3.926 20 N -0.897 5.897 21 Si 0.908 3.092 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.270 1.270 25 C 0.108 3.892 26 C -0.044 4.044 27 C -0.100 4.100 28 C -0.113 4.113 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.160 0.840 35 H 0.170 0.830 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.394 0.606 39 H 0.275 0.725 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.156 0.844 43 H 0.129 0.871 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.192 12.050 4.613 15.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.085 4.085 3 C -0.138 4.138 4 C -0.125 4.125 5 C -0.047 4.047 6 C -0.106 4.106 7 C -0.037 4.037 8 N -0.193 5.193 9 C -0.007 4.007 10 C -0.170 4.170 11 C 0.371 3.629 12 O -0.434 6.434 13 N -0.359 5.359 14 C -0.064 4.064 15 C 0.202 3.798 16 O -0.382 6.382 17 C -0.573 4.573 18 H 0.092 0.908 19 C -0.129 4.129 20 N -0.537 5.537 21 Si 0.735 3.265 22 H -0.202 1.202 23 H -0.208 1.208 24 H -0.194 1.194 25 C -0.014 4.014 26 C -0.070 4.070 27 C -0.117 4.117 28 C -0.131 4.131 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.177 0.823 35 H 0.187 0.813 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.251 0.749 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.107 0.893 42 H 0.173 0.827 43 H 0.147 0.853 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.571 13.240 4.767 15.979 hybrid contribution -1.628 -1.674 -0.053 2.335 sum -9.198 11.566 4.714 15.511 Atomic orbital electron populations 1.20812 0.91178 1.02774 1.02424 1.20020 0.96164 0.93184 0.99178 1.20924 0.93831 0.97575 1.01480 1.21137 0.94190 0.97084 1.00043 1.18568 0.90565 0.93827 1.01769 1.19727 0.93280 0.94193 1.03397 1.23043 0.89981 0.97252 0.93379 1.67759 1.07723 1.30671 1.13108 1.23021 1.00939 0.85948 0.90745 1.21021 0.94154 0.95729 1.06060 1.17439 0.86566 0.81711 0.77188 1.90723 1.13700 1.86579 1.52435 1.49577 1.13555 1.04967 1.67801 1.24493 0.83916 0.97958 0.99986 1.19548 0.88935 0.90555 0.80767 1.86065 1.43713 1.92109 1.16339 1.21428 1.13774 1.07527 1.14606 0.90793 1.25071 0.96251 0.97370 0.94209 1.69258 1.27979 1.38687 1.17819 0.86317 0.79661 0.82371 0.78138 1.20247 1.20826 1.19441 1.23391 1.00939 0.77175 0.99913 1.22547 0.93262 0.99509 0.91657 1.21335 0.94413 0.97633 0.98359 1.21036 0.93921 0.97840 1.00261 0.91058 0.91404 0.91614 0.85881 0.85685 0.82330 0.81333 0.89694 0.91270 0.74890 0.91469 0.91136 0.89319 0.82669 0.85312 0.85491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.87 10.01 36.01 0.36 -0.51 16 2 C -0.09 -0.87 5.88 -104.56 -0.62 -1.48 16 3 C -0.12 -1.16 9.68 -39.63 -0.38 -1.55 16 4 C -0.11 -1.12 9.44 -39.25 -0.37 -1.49 16 5 C -0.05 -0.59 5.88 -104.90 -0.62 -1.21 16 6 C -0.10 -1.45 5.89 -104.80 -0.62 -2.07 16 7 C 0.12 1.58 10.59 -17.12 -0.18 1.40 16 8 N -0.49 -7.25 10.33 -12.64 -0.13 -7.38 16 9 C 0.15 2.43 10.76 -17.10 -0.18 2.25 16 10 C -0.16 -2.88 5.89 -104.86 -0.62 -3.50 16 11 C 0.58 11.95 8.01 -12.32 -0.10 11.86 16 12 O -0.55 -12.64 17.17 5.32 0.09 -12.54 16 13 N -0.63 -12.93 3.67 -186.18 -0.68 -13.61 16 14 C 0.06 1.19 5.60 -8.38 -0.05 1.14 16 15 C 0.24 5.59 1.58 -91.13 -0.14 5.45 16 16 O -0.57 -14.30 13.55 -35.23 -0.48 -14.78 16 17 C -0.54 -12.72 8.70 -34.44 -0.30 -13.02 16 18 H 0.07 1.71 7.81 -52.48 -0.41 1.30 16 19 C 0.07 1.74 5.39 -17.82 -0.10 1.65 16 20 N -0.90 -21.64 11.01 55.43 0.61 -21.03 16 21 Si 0.91 18.55 29.54 -169.99 -5.02 13.53 16 22 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 23 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 24 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 25 C 0.11 2.26 8.03 -8.51 -0.07 2.20 16 26 C -0.04 -0.70 8.60 -38.53 -0.33 -1.03 16 27 C -0.10 -1.29 9.44 -39.25 -0.37 -1.66 16 28 C -0.11 -1.30 9.68 -39.63 -0.38 -1.68 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 31 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 32 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 33 H 0.13 1.02 6.23 -52.49 -0.33 0.70 16 34 H 0.16 1.54 6.21 -52.49 -0.33 1.22 16 35 H 0.17 2.57 7.67 -52.48 -0.40 2.17 16 36 H 0.09 1.58 8.10 -51.92 -0.42 1.15 16 37 H 0.07 1.39 6.73 -51.93 -0.35 1.04 16 38 H 0.39 9.99 6.33 45.56 0.29 10.28 16 39 H 0.27 6.32 8.31 -40.82 -0.34 5.98 16 40 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 41 H 0.09 1.67 8.10 -51.93 -0.42 1.25 16 42 H 0.16 2.46 2.58 -52.49 -0.14 2.33 16 43 H 0.13 1.71 6.27 -52.49 -0.33 1.38 16 44 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 LS Contribution 368.52 15.07 5.55 5.55 Total: -1.00 -28.27 368.52 -9.62 -37.89 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: -4.50 Total: 15.62 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -5.06 Total: -3.25 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: -0.20 Total: -42.02 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.39 Total: -27.33 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.02 Total: 13.53 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.27 -9.62 -37.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193983590.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.824 kcal (2) G-P(sol) polarization free energy of solvation -28.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds