Wall clock time and date at job start Tue Mar 31 2020 20:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38322 * 119.88150 * 2 1 4 4 C 1.38017 * 120.12080 * 179.97438 * 3 2 1 5 5 C 1.39336 * 119.87728 * 0.02562 * 4 3 2 6 6 C 1.48404 * 120.11946 * 179.97438 * 5 4 3 7 7 C 1.39444 * 120.46707 * 0.02562 * 6 5 4 8 8 N 1.31793 * 120.91115 * 179.97438 * 7 6 5 9 9 C 1.31723 * 122.01374 * 0.02562 * 8 7 6 10 10 C 1.39579 * 120.83288 * 359.71242 * 9 8 7 11 11 C 1.47860 * 120.50479 * 180.31401 * 10 9 8 12 12 O 1.21547 * 119.99393 * 6.80795 * 11 10 9 13 13 N 1.34777 * 120.00148 * 186.80330 * 11 10 9 14 14 C 1.47062 * 136.05766 * 5.18914 * 13 11 10 15 15 C 1.53755 * 87.88788 * 152.96514 * 14 13 11 16 16 O 1.42899 * 114.39135 * 272.67745 * 15 14 13 17 17 C 1.50694 * 114.26906 * 139.79251 * 15 14 13 18 18 H 1.08005 * 120.00261 * 266.47282 * 17 15 14 19 19 C 1.37875 * 120.00105 * 86.47370 * 17 15 14 20 20 N 1.31514 * 119.99994 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 119.99871 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46957 * 90.00412 * 21 19 17 23 23 H 1.48507 * 109.46732 * 209.99877 * 21 19 17 24 24 H 1.48494 * 109.47281 * 329.99734 * 21 19 17 25 25 C 1.47066 * 136.05673 * 185.56315 * 13 11 10 26 26 C 1.39474 * 120.47308 * 180.02562 * 6 5 4 27 27 C 1.39331 * 119.76094 * 0.25253 * 5 4 3 28 28 C 1.38027 * 119.87648 * 359.46929 * 27 5 4 29 29 H 1.08999 * 109.47208 * 89.99589 * 1 2 3 30 30 H 1.08999 * 109.47637 * 209.99875 * 1 2 3 31 31 H 1.09003 * 109.47010 * 329.99979 * 1 2 3 32 32 H 1.08003 * 119.93576 * 359.97438 * 3 2 1 33 33 H 1.07994 * 120.06096 * 179.97438 * 4 3 2 34 34 H 1.07998 * 119.54413 * 359.97377 * 7 6 5 35 35 H 1.08003 * 119.58139 * 179.97438 * 9 8 7 36 36 H 1.09009 * 113.46848 * 267.69538 * 14 13 11 37 37 H 1.08997 * 113.47049 * 38.13295 * 14 13 11 38 38 H 0.96704 * 113.99949 * 273.58107 * 16 15 14 39 39 H 0.96997 * 119.99851 * 179.97438 * 20 19 17 40 40 H 1.09007 * 113.46530 * 321.86508 * 25 13 11 41 41 H 1.08996 * 113.46717 * 92.29846 * 25 13 11 42 42 H 1.08000 * 120.90200 * 0.02562 * 26 6 5 43 43 H 1.07990 * 120.05899 * 179.74779 * 27 5 4 44 44 H 1.07998 * 119.94092 * 180.27916 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1993 0.0000 4 6 3.5763 1.2051 0.0005 5 6 4.2755 -0.0002 0.0005 6 6 5.7595 -0.0002 0.0005 7 6 6.4666 1.2016 0.0011 8 7 7.7845 1.2118 0.0016 9 6 8.4914 0.1003 0.0011 10 6 7.8639 -1.1465 0.0060 11 6 8.6646 -2.3896 0.0125 12 8 9.8722 -2.3339 0.1383 13 7 8.0552 -3.5844 -0.1211 14 6 6.6850 -4.0510 -0.3809 15 6 7.2953 -5.3182 -1.0022 16 8 7.6079 -5.2023 -2.3918 17 6 6.5629 -6.5900 -0.6605 18 1 6.8788 -7.1849 0.1839 19 6 5.4895 -6.9944 -1.4256 20 7 5.1046 -6.2698 -2.4534 21 14 4.5812 -8.5707 -1.0014 22 1 3.4758 -8.2663 -0.0576 23 1 4.0233 -9.1692 -2.2407 24 1 5.5224 -9.5294 -0.3689 25 6 8.4668 -4.9951 -0.0645 26 6 6.4667 -1.2024 0.0000 27 6 3.5762 -1.2053 -0.0053 28 6 2.1960 -1.1994 0.0000 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6532 2.1329 -0.0004 33 1 4.1134 2.1420 0.0001 34 1 5.9268 2.1370 0.0011 35 1 9.5700 0.1544 0.0011 36 1 6.1130 -4.2449 0.5266 37 1 6.1440 -3.4321 -1.0966 38 1 6.8678 -5.4065 -2.9798 39 1 4.3497 -6.5545 -2.9918 40 1 9.4439 -5.1805 -0.5108 41 1 8.3646 -5.4377 0.9263 42 1 5.9493 -2.1503 -0.0008 43 1 4.1132 -2.1422 -0.0095 44 1 1.6530 -2.1330 0.0000 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193983590.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:33 Heat of formation + Delta-G solvation = 1.266767 kcal Electronic energy + Delta-G solvation = -28541.864792 eV Core-core repulsion = 24617.744769 eV Total energy + Delta-G solvation = -3924.120024 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.03506 -40.97678 -39.96247 -39.00466 -36.03961 -35.10630 -34.15670 -33.76168 -31.94027 -31.64620 -30.41840 -27.70744 -27.42423 -27.08228 -25.59762 -24.42407 -23.16243 -22.33033 -21.62400 -20.42798 -19.41283 -18.48316 -18.30976 -17.70761 -17.16627 -17.04337 -16.69497 -16.52789 -16.03851 -15.95962 -15.63218 -15.30419 -14.98888 -14.80455 -14.55703 -14.51549 -14.40342 -14.24763 -13.85975 -13.80107 -13.44638 -13.30739 -13.10620 -12.95809 -12.83711 -12.76518 -12.31737 -12.25335 -12.21092 -11.86099 -11.58275 -11.24102 -11.15455 -10.78913 -10.67102 -10.64519 -10.23184 -9.89899 -9.69625 -9.06735 -8.29704 -6.47047 -0.67328 -0.32339 0.46739 0.71524 1.46115 1.50454 1.59078 1.69736 1.75836 2.39159 2.58322 2.91261 2.98246 3.07239 3.35026 3.44911 3.57098 3.68446 3.70480 3.81535 4.01730 4.03490 4.06685 4.17075 4.31348 4.39886 4.48717 4.51006 4.54696 4.63997 4.71511 4.78439 4.82691 4.86259 4.87664 4.90943 4.94300 5.14840 5.17002 5.25508 5.35645 5.50446 5.58795 5.67874 5.70513 5.86836 6.04580 6.58785 6.63314 6.71276 6.93708 7.26958 7.44849 8.76601 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.008062 B = 0.004426 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3472.195342 B = 6325.195655 C = 9426.458032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.084 4.084 3 C -0.120 4.120 4 C -0.102 4.102 5 C -0.068 4.068 6 C -0.097 4.097 7 C 0.132 3.868 8 N -0.489 5.489 9 C 0.148 3.852 10 C -0.185 4.185 11 C 0.577 3.423 12 O -0.585 6.585 13 N -0.630 5.630 14 C 0.078 3.922 15 C 0.223 3.777 16 O -0.586 6.586 17 C -0.553 4.553 18 H 0.077 0.923 19 C 0.036 3.964 20 N -0.916 5.916 21 Si 0.968 3.032 22 H -0.269 1.269 23 H -0.284 1.284 24 H -0.270 1.270 25 C 0.107 3.893 26 C -0.053 4.053 27 C -0.119 4.119 28 C -0.129 4.129 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.155 0.845 33 H 0.154 0.846 34 H 0.201 0.799 35 H 0.170 0.830 36 H 0.101 0.899 37 H 0.065 0.935 38 H 0.390 0.610 39 H 0.277 0.723 40 H 0.057 0.943 41 H 0.111 0.889 42 H 0.150 0.850 43 H 0.113 0.887 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.765 13.975 5.357 19.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.084 4.084 3 C -0.138 4.138 4 C -0.119 4.119 5 C -0.068 4.068 6 C -0.099 4.099 7 C -0.025 4.025 8 N -0.196 5.196 9 C -0.010 4.010 10 C -0.190 4.190 11 C 0.368 3.632 12 O -0.468 6.468 13 N -0.362 5.362 14 C -0.044 4.044 15 C 0.182 3.818 16 O -0.399 6.399 17 C -0.590 4.590 18 H 0.095 0.905 19 C -0.164 4.164 20 N -0.557 5.557 21 Si 0.793 3.207 22 H -0.195 1.195 23 H -0.210 1.210 24 H -0.195 1.195 25 C -0.015 4.015 26 C -0.078 4.078 27 C -0.137 4.137 28 C -0.147 4.147 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.173 0.827 33 H 0.171 0.829 34 H 0.218 0.782 35 H 0.187 0.813 36 H 0.118 0.882 37 H 0.083 0.917 38 H 0.246 0.754 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.129 0.871 42 H 0.167 0.833 43 H 0.131 0.869 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.146 15.166 5.519 19.063 hybrid contribution -0.938 -2.205 -0.305 2.416 sum -11.083 12.961 5.214 17.833 Atomic orbital electron populations 1.20879 0.89209 1.03877 1.03199 1.20400 0.97696 0.92830 0.97467 1.21332 0.93693 0.98630 1.00138 1.21472 0.94811 0.97134 0.98497 1.18591 0.89711 0.94734 1.03810 1.19904 0.94213 0.93648 1.02115 1.23689 0.89381 0.98474 0.91002 1.67849 1.08635 1.29726 1.13367 1.23035 1.01228 0.85822 0.90879 1.20800 0.94584 0.94684 1.08886 1.17949 0.86518 0.82431 0.76260 1.90686 1.15033 1.87087 1.53955 1.49609 1.13643 1.04994 1.67938 1.24284 0.83676 0.96278 1.00195 1.19830 0.90345 0.91719 0.79953 1.86049 1.43905 1.92299 1.17654 1.21642 1.14227 1.08127 1.15053 0.90464 1.25732 0.96807 0.99846 0.94052 1.69321 1.28247 1.39767 1.18333 0.85385 0.78546 0.78981 0.77743 1.19464 1.21003 1.19465 1.23438 0.99661 0.77845 1.00527 1.22526 0.92669 1.00404 0.92226 1.21360 0.95246 0.97450 0.99671 1.21195 0.93494 0.99004 1.01002 0.90304 0.91145 0.89765 0.82703 0.82886 0.78242 0.81263 0.88151 0.91675 0.75416 0.91286 0.92414 0.87133 0.83299 0.86938 0.85136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.37 10.01 71.24 0.71 -0.66 16 2 C -0.08 -1.48 5.88 -19.82 -0.12 -1.60 16 3 C -0.12 -1.86 9.68 22.24 0.22 -1.65 16 4 C -0.10 -1.78 9.44 22.48 0.21 -1.57 16 5 C -0.07 -1.61 5.88 -20.04 -0.12 -1.73 16 6 C -0.10 -2.58 5.89 -19.98 -0.12 -2.70 16 7 C 0.13 3.12 10.59 84.99 0.90 4.02 16 8 N -0.49 -13.85 10.33 -193.91 -2.00 -15.86 16 9 C 0.15 4.76 10.76 85.03 0.91 5.67 16 10 C -0.18 -6.59 5.89 -20.02 -0.12 -6.71 16 11 C 0.58 24.55 8.01 86.79 0.70 25.24 16 12 O -0.58 -27.66 17.17 -3.86 -0.07 -27.73 16 13 N -0.63 -26.78 3.67 -861.72 -3.16 -29.94 16 14 C 0.08 3.22 5.60 83.26 0.47 3.69 16 15 C 0.22 10.47 1.58 -11.12 -0.02 10.45 16 16 O -0.59 -30.49 13.55 -148.98 -2.02 -32.51 16 17 C -0.55 -26.48 8.70 25.60 0.22 -26.26 16 18 H 0.08 3.56 7.81 -2.91 -0.02 3.54 16 19 C 0.04 1.72 5.39 84.65 0.46 2.18 16 20 N -0.92 -44.66 11.01 21.45 0.24 -44.42 16 21 Si 0.97 37.78 29.54 68.60 2.03 39.81 16 22 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 23 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 24 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 25 C 0.11 4.63 8.03 83.17 0.67 5.30 16 26 C -0.05 -1.70 8.60 22.95 0.20 -1.50 16 27 C -0.12 -3.07 9.44 22.48 0.21 -2.86 16 28 C -0.13 -2.86 9.68 22.24 0.22 -2.64 16 29 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 0.81 8.08 -2.39 -0.02 0.79 16 31 H 0.08 0.71 8.08 -2.39 -0.02 0.69 16 32 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 33 H 0.15 1.72 6.23 -2.91 -0.02 1.70 16 34 H 0.20 2.95 6.21 -2.91 -0.02 2.94 16 35 H 0.17 5.29 7.67 -2.91 -0.02 5.27 16 36 H 0.10 3.78 8.10 -2.38 -0.02 3.76 16 37 H 0.06 2.72 6.73 -2.39 -0.02 2.71 16 38 H 0.39 20.48 6.33 -74.05 -0.47 20.01 16 39 H 0.28 12.80 8.31 -92.71 -0.77 12.03 16 40 H 0.06 2.59 8.14 -2.38 -0.02 2.57 16 41 H 0.11 4.21 8.10 -2.39 -0.02 4.19 16 42 H 0.15 4.90 2.58 -2.91 -0.01 4.89 16 43 H 0.11 3.15 6.27 -2.92 -0.02 3.13 16 44 H 0.13 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -61.69 368.52 1.21 -60.47 By element: Atomic # 1 Polarization: 42.90 SS G_CDS: 0.60 Total: 43.50 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 5.60 Total: 6.67 kcal Atomic # 7 Polarization: -85.29 SS G_CDS: -4.93 Total: -90.21 kcal Atomic # 8 Polarization: -58.16 SS G_CDS: -2.08 Total: -60.24 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 2.03 Total: 39.81 kcal Total: -61.69 1.21 -60.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193983590.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.741 kcal (2) G-P(sol) polarization free energy of solvation -61.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds