Wall clock time and date at job start Tue Mar 31 2020 20:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00029 * 2 1 4 4 H 1.48498 * 109.47147 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46915 * 299.99986 * 3 2 1 6 6 H 1.48502 * 109.46775 * 59.99865 * 3 2 1 7 7 C 1.38723 * 119.99699 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99340 * 180.02562 * 7 2 1 9 9 O 1.34770 * 120.00291 * 0.02562 * 7 2 1 10 10 C 1.35580 * 117.00029 * 185.05942 * 9 7 2 11 11 C 1.39173 * 119.89641 * 354.35714 * 10 9 7 12 12 C 1.37600 * 120.10031 * 179.97438 * 11 10 9 13 13 C 1.40028 * 119.89503 * 0.02562 * 12 11 10 14 14 C 1.46957 * 120.09556 * 179.97438 * 13 12 11 15 15 C 1.35025 * 119.99796 * 136.68202 * 14 13 12 16 16 C 1.46258 * 119.99779 * 348.68011 * 15 14 13 17 17 O 1.21715 * 120.00005 * 353.21380 * 16 15 14 18 18 N 1.34780 * 119.99402 * 173.21316 * 16 15 14 19 19 C 1.46500 * 119.99272 * 180.02562 * 18 16 15 20 20 C 1.53005 * 109.46893 * 179.97438 * 19 18 16 21 21 C 1.50695 * 109.47188 * 179.97438 * 20 19 18 22 22 C 1.38673 * 120.41977 * 270.25280 * 21 20 19 23 23 C 1.38633 * 118.41911 * 180.24159 * 22 21 20 24 24 C 1.38231 * 119.16351 * 359.75127 * 23 22 21 25 25 N 1.31853 * 120.75839 * 0.02562 * 24 23 22 26 26 C 1.31886 * 121.73232 * 359.97438 * 25 24 23 27 27 C 1.40021 * 119.79827 * 0.27101 * 13 12 11 28 28 C 1.37601 * 119.89813 * 359.42349 * 27 13 12 29 29 H 0.96993 * 120.00103 * 359.97438 * 1 2 3 30 30 H 1.08000 * 119.94754 * 359.97438 * 11 10 9 31 31 H 1.07997 * 120.04909 * 180.02562 * 12 11 10 32 32 H 1.08003 * 120.00287 * 316.67748 * 14 13 12 33 33 H 1.07997 * 120.00068 * 168.68145 * 15 14 13 34 34 H 0.96999 * 120.00404 * 0.02562 * 18 16 15 35 35 H 1.09004 * 109.47326 * 60.00149 * 19 18 16 36 36 H 1.08997 * 109.47264 * 299.99752 * 19 18 16 37 37 H 1.09004 * 109.46966 * 59.99985 * 20 19 18 38 38 H 1.08997 * 109.47009 * 299.99964 * 20 19 18 39 39 H 1.07994 * 120.79128 * 359.97023 * 22 21 20 40 40 H 1.07997 * 120.41837 * 179.73107 * 23 22 21 41 41 H 1.07998 * 119.61902 * 180.02562 * 24 23 22 42 42 H 1.07997 * 119.62001 * 179.97438 * 26 25 24 43 43 H 1.08003 * 120.04702 * 179.72359 * 27 13 12 44 44 H 1.08001 * 119.94634 * 180.27673 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0087 -1.2014 0.0005 8 1 3.0887 -1.2013 0.0010 9 8 1.3348 -2.3686 0.0005 10 6 2.0691 -3.5033 0.1076 11 6 3.4591 -3.4341 0.0925 12 6 4.2084 -4.5830 0.2015 13 6 3.5703 -5.8231 0.3270 14 6 4.3663 -7.0530 0.4431 15 6 4.0216 -7.9977 1.3441 16 6 3.0195 -7.7013 2.3673 17 8 2.5869 -6.5698 2.4858 18 7 2.5751 -8.6812 3.1790 19 6 1.5709 -8.3844 4.2036 20 6 1.2424 -9.6609 4.9806 21 6 0.2099 -9.3555 6.0349 22 6 0.5996 -8.9574 7.3048 23 6 -0.3848 -8.6919 8.2442 24 6 -1.7127 -8.8269 7.8848 25 7 -2.0466 -9.2034 6.6661 26 6 -1.1373 -9.4642 5.7471 27 6 2.1717 -5.8883 0.3355 28 6 1.4306 -4.7335 0.2323 29 1 -0.4850 0.8400 0.0004 30 1 3.9502 -2.4772 -0.0048 31 1 5.2869 -4.5283 0.1901 32 1 5.2270 -7.2012 -0.1923 33 1 4.4858 -8.9722 1.3091 34 1 2.9201 -9.5829 3.0848 35 1 0.6662 -8.0066 3.7271 36 1 1.9620 -7.6322 4.8886 37 1 2.1469 -10.0391 5.4571 38 1 0.8511 -10.4128 4.2953 39 1 1.6452 -8.8608 7.5573 40 1 -0.1175 -8.3839 9.2442 41 1 -2.4856 -8.6215 8.6106 42 1 -1.4490 -9.7705 4.7595 43 1 1.6754 -6.8431 0.4276 44 1 0.3517 -4.7825 0.2432 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221533795.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:05 Heat of formation + Delta-G solvation = 22.703780 kcal Electronic energy + Delta-G solvation = -26967.499154 eV Core-core repulsion = 23044.308708 eV Total energy + Delta-G solvation = -3923.190445 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.52260 -39.71197 -38.69867 -36.67516 -35.62480 -33.35989 -33.03392 -32.23064 -32.08040 -30.10690 -29.26687 -27.81068 -25.48117 -24.63343 -23.88537 -22.72975 -21.78836 -21.72066 -20.92017 -19.24122 -17.92172 -17.43041 -17.15184 -16.78537 -16.65594 -16.03635 -15.29740 -15.23421 -14.71281 -14.54180 -14.31741 -14.02454 -13.95372 -13.72050 -13.54307 -13.40101 -13.36817 -13.08513 -12.95681 -12.55389 -12.31808 -12.17338 -12.02259 -11.68734 -11.57661 -11.35595 -11.00728 -10.68230 -10.59100 -10.39480 -10.11487 -9.75446 -9.51115 -9.42192 -9.26947 -9.15498 -8.99575 -8.68706 -7.91230 -6.85385 -6.44721 -4.00348 0.76822 0.96446 1.24610 2.43558 2.71006 3.14137 3.15695 3.20722 3.24815 3.52558 3.63954 3.98003 4.15639 4.42309 4.46612 4.63500 4.65956 4.70832 4.73378 4.94024 5.09660 5.13486 5.14427 5.23251 5.30753 5.36904 5.45891 5.58974 5.61619 5.74191 5.77594 5.82992 5.85868 5.95657 6.26137 6.33408 6.37171 6.43328 6.49846 6.60977 6.80078 7.04747 7.13892 7.37502 7.45964 7.51756 7.64882 7.67583 7.93504 8.02149 8.53640 9.01003 9.73203 10.73249 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.010186 B = 0.002388 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2748.077392 B =11720.872192 C =13755.873095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.038 3.962 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.389 4.389 8 H 0.094 0.906 9 O -0.173 6.173 10 C 0.171 3.829 11 C -0.251 4.251 12 C -0.041 4.041 13 C -0.191 4.191 14 C 0.028 3.972 15 C -0.268 4.268 16 C 0.538 3.462 17 O -0.509 6.509 18 N -0.739 5.739 19 C 0.126 3.874 20 C -0.086 4.086 21 C -0.133 4.133 22 C -0.070 4.070 23 C -0.171 4.171 24 C 0.094 3.906 25 N -0.483 5.483 26 C 0.106 3.894 27 C 0.012 3.988 28 C -0.203 4.203 29 H 0.270 0.730 30 H 0.126 0.874 31 H 0.106 0.894 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.395 0.605 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.155 0.845 42 H 0.156 0.844 43 H 0.101 0.899 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.520 -21.840 11.155 25.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.166 4.166 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.466 4.466 8 H 0.112 0.888 9 O -0.075 6.075 10 C 0.117 3.883 11 C -0.270 4.270 12 C -0.060 4.060 13 C -0.192 4.192 14 C 0.009 3.991 15 C -0.289 4.289 16 C 0.328 3.672 17 O -0.385 6.385 18 N -0.392 5.392 19 C 0.002 3.998 20 C -0.124 4.124 21 C -0.135 4.135 22 C -0.096 4.096 23 C -0.191 4.191 24 C -0.062 4.062 25 N -0.191 5.191 26 C -0.051 4.051 27 C -0.006 4.006 28 C -0.222 4.222 29 H 0.080 0.920 30 H 0.144 0.856 31 H 0.124 0.876 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.229 0.771 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.152 0.848 40 H 0.153 0.847 41 H 0.173 0.827 42 H 0.173 0.827 43 H 0.119 0.881 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.850 -20.838 11.019 23.884 hybrid contribution 1.616 0.399 0.411 1.714 sum 5.466 -20.439 11.430 24.047 Atomic orbital electron populations 1.70033 1.06025 1.27648 1.45693 1.25334 0.95846 0.98916 0.96517 0.85631 0.79177 0.80278 0.78254 1.19039 1.20105 1.20114 1.21445 0.91943 0.80785 1.52378 0.88837 1.83907 1.34781 1.11661 1.77162 1.19528 0.90263 0.87739 0.90819 1.20953 0.93658 0.98801 1.13597 1.20743 0.97875 0.91571 0.95799 1.18292 0.93019 0.92260 1.15582 1.22340 0.93817 0.91329 0.91628 1.22581 1.05272 1.00997 1.00094 1.18511 0.81927 0.84805 0.81994 1.91010 1.57036 1.20495 1.69997 1.45967 1.44276 1.12398 1.36592 1.21215 0.92438 0.96074 0.90047 1.20709 0.97633 0.98053 0.96023 1.20701 0.95857 1.01404 0.95540 1.21537 1.00319 0.95205 0.92543 1.22171 0.94250 1.01724 1.00935 1.22811 0.95209 0.94858 0.93356 1.67710 1.38512 1.10909 1.02009 1.22740 0.88444 0.95360 0.98581 1.20436 0.92095 0.96187 0.91895 1.20010 0.99318 0.90256 1.12606 0.92004 0.85646 0.87614 0.86076 0.86151 0.77122 0.91266 0.91545 0.90120 0.89856 0.84766 0.84684 0.82746 0.82697 0.88111 0.86847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.71 13.67 55.48 0.76 -24.95 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.92 29.55 -169.99 -5.02 15.89 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.39 -11.20 9.48 30.91 0.29 -10.90 16 8 H 0.09 2.50 5.18 -52.48 -0.27 2.22 16 9 O -0.17 -5.13 9.74 0.74 0.01 -5.12 16 10 C 0.17 4.41 6.66 -38.89 -0.26 4.15 16 11 C -0.25 -5.78 9.14 -39.47 -0.36 -6.14 16 12 C -0.04 -0.81 9.78 -39.14 -0.38 -1.19 16 13 C -0.19 -3.53 4.54 -105.03 -0.48 -4.01 16 14 C 0.03 0.39 9.80 -37.19 -0.36 0.03 16 15 C -0.27 -3.27 9.90 -37.50 -0.37 -3.64 16 16 C 0.54 7.72 6.77 -13.04 -0.09 7.63 16 17 O -0.51 -9.93 12.18 5.18 0.06 -9.87 16 18 N -0.74 -7.48 5.55 -61.75 -0.34 -7.82 16 19 C 0.13 1.27 5.66 -4.04 -0.02 1.25 16 20 C -0.09 -0.56 5.48 -27.88 -0.15 -0.72 16 21 C -0.13 -1.09 5.15 -104.48 -0.54 -1.63 16 22 C -0.07 -0.54 9.86 -39.27 -0.39 -0.93 16 23 C -0.17 -1.29 10.11 -39.44 -0.40 -1.69 16 24 C 0.09 0.84 11.18 -17.55 -0.20 0.64 16 25 N -0.48 -5.30 10.36 -13.25 -0.14 -5.44 16 26 C 0.11 1.01 10.86 -17.55 -0.19 0.82 16 27 C 0.01 0.25 6.60 -39.15 -0.26 -0.01 16 28 C -0.20 -4.71 9.97 -39.47 -0.39 -5.11 16 29 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.13 2.86 5.62 -52.49 -0.29 2.57 16 31 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 32 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 33 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 34 H 0.40 2.60 8.45 -40.82 -0.34 2.26 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.42 8.10 -51.93 -0.42 -0.01 16 38 H 0.08 0.44 8.09 -51.93 -0.42 0.02 16 39 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 41 H 0.16 0.98 8.06 -52.49 -0.42 0.56 16 42 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 43 H 0.10 1.84 7.02 -52.48 -0.37 1.48 16 44 H 0.11 2.58 8.06 -52.49 -0.42 2.16 16 LS Contribution 380.35 15.07 5.73 5.73 Total: -1.00 -36.18 380.35 -9.07 -45.25 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -5.48 Total: 6.80 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: -4.65 Total: -20.47 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.28 Total: -38.21 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: 0.07 Total: -14.99 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.18 -9.07 -45.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221533795.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.955 kcal (2) G-P(sol) polarization free energy of solvation -36.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds