Wall clock time and date at job start Tue Mar 31 2020 20:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31569 * 1 3 3 Si 1.86802 * 120.00231 * 2 1 4 4 H 1.48499 * 109.47301 * 270.00529 * 3 2 1 5 5 H 1.48504 * 109.46995 * 30.00235 * 3 2 1 6 6 H 1.48494 * 109.47127 * 150.00558 * 3 2 1 7 7 C 1.38634 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99813 * 359.97438 * 7 2 1 9 9 O 1.34801 * 120.00537 * 179.97438 * 7 2 1 10 10 C 1.35779 * 117.00180 * 174.98046 * 9 7 2 11 11 C 1.38737 * 120.09154 * 5.19655 * 10 9 7 12 12 C 1.38335 * 119.98270 * 179.97438 * 11 10 9 13 13 F 1.35100 * 119.92717 * 179.97438 * 12 11 10 14 14 C 1.38550 * 120.14879 * 359.97438 * 12 11 10 15 15 C 1.38202 * 120.17224 * 359.75204 * 14 12 11 16 16 C 1.38688 * 120.02414 * 0.50549 * 15 14 12 17 17 N 1.40130 * 120.07691 * 179.76831 * 16 15 14 18 18 C 1.34774 * 120.00043 * 335.23086 * 17 16 15 19 19 O 1.21589 * 120.00011 * 354.32793 * 18 17 16 20 20 N 1.34777 * 119.99951 * 174.32639 * 18 17 16 21 21 C 1.46505 * 120.00209 * 179.97438 * 20 18 17 22 22 H 1.08997 * 109.46623 * 325.00528 * 21 20 18 23 23 C 1.53004 * 109.46802 * 84.99936 * 21 20 18 24 24 C 1.52996 * 109.46926 * 179.97438 * 23 21 20 25 25 C 1.52998 * 109.47588 * 300.00487 * 24 23 21 26 26 H 1.09000 * 109.47032 * 300.00088 * 25 24 23 27 27 O 1.42895 * 109.47212 * 180.02562 * 25 24 23 28 28 C 1.52995 * 109.46997 * 59.99876 * 25 24 23 29 29 C 1.52995 * 109.47243 * 205.00358 * 21 20 18 30 30 H 0.97004 * 119.99999 * 359.97438 * 1 2 3 31 31 H 1.08010 * 120.00737 * 359.97438 * 11 10 9 32 32 H 1.07997 * 119.90940 * 179.97438 * 14 12 11 33 33 H 1.07999 * 119.98515 * 180.25101 * 15 14 12 34 34 H 0.96999 * 120.00037 * 155.22235 * 17 16 15 35 35 H 0.97001 * 120.00048 * 0.02562 * 20 18 17 36 36 H 1.09001 * 109.47540 * 300.00731 * 23 21 20 37 37 H 1.09000 * 109.46795 * 60.00398 * 23 21 20 38 38 H 1.09000 * 109.47006 * 60.00592 * 24 23 21 39 39 H 1.09005 * 109.46648 * 180.02562 * 24 23 21 40 40 H 0.96701 * 114.00411 * 59.99784 * 27 25 24 41 41 H 1.08998 * 109.47406 * 180.02562 * 28 25 24 42 42 H 1.09000 * 109.47056 * 60.00226 * 28 25 24 43 43 H 1.08996 * 109.47049 * 60.00483 * 29 21 20 44 44 H 1.09000 * 109.47204 * 300.00123 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4972 2.0465 -1.4000 5 1 1.4472 2.6527 0.7001 6 1 3.5473 1.4401 0.6999 7 6 2.0089 -1.2006 -0.0005 8 1 1.4689 -2.1359 -0.0005 9 8 3.3569 -1.2007 -0.0011 10 6 3.9733 -2.4059 0.1043 11 6 3.2239 -3.5734 0.0977 12 6 3.8543 -4.8001 0.2046 13 9 3.1234 -5.9363 0.1987 14 6 5.2336 -4.8662 0.3179 15 6 5.9867 -3.7074 0.3194 16 6 5.3617 -2.4735 0.2180 17 7 6.1239 -1.2976 0.2243 18 6 7.3392 -1.2854 0.8068 19 8 7.7313 -2.2619 1.4159 20 7 8.1199 -0.1907 0.7141 21 6 9.4408 -0.1771 1.3478 22 1 9.4039 -0.7461 2.2767 23 6 10.4659 -0.8083 0.4034 24 6 11.8454 -0.7936 1.0649 25 6 12.2511 0.6504 1.3665 26 1 12.2876 1.2192 0.4374 27 8 13.5398 0.6641 1.9837 28 6 11.2260 1.2815 2.3108 29 6 9.8467 1.2667 1.6498 30 1 -0.4850 0.8401 0.0004 31 1 2.1486 -3.5246 0.0092 32 1 5.7217 -5.8259 0.4015 33 1 7.0620 -3.7626 0.4037 34 1 5.7769 -0.4924 -0.1907 35 1 7.8070 0.5885 0.2285 36 1 10.1766 -1.8370 0.1882 37 1 10.5027 -0.2393 -0.5255 38 1 11.8089 -1.3624 1.9940 39 1 12.5758 -1.2429 0.3919 40 1 14.2405 0.2785 1.4401 41 1 11.5148 2.3104 2.5253 42 1 11.1895 0.7128 3.2399 43 1 9.1165 1.7163 2.3226 44 1 9.8836 1.8357 0.7209 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245523391.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:10 Heat of formation + Delta-G solvation = -132.747459 kcal Electronic energy + Delta-G solvation = -29146.842709 eV Core-core repulsion = 24786.142168 eV Total energy + Delta-G solvation = -4360.700541 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.26717 -40.62982 -39.51279 -38.67185 -36.75574 -36.06434 -34.23259 -33.45995 -32.51329 -31.20876 -29.62867 -29.14591 -27.68344 -25.43873 -23.20780 -23.15815 -22.13817 -21.54063 -20.66955 -20.28743 -18.45122 -18.24438 -17.84669 -17.57726 -17.04111 -16.02471 -15.67882 -15.39564 -15.32442 -15.01259 -14.92069 -14.77786 -14.25809 -14.15989 -13.98431 -13.82692 -13.65018 -13.39061 -13.23111 -12.66118 -12.57686 -12.46984 -12.40369 -12.26299 -11.89474 -11.70567 -11.54980 -11.47448 -11.03415 -10.98872 -10.82554 -10.63886 -10.48841 -10.16981 -9.98289 -9.78846 -9.55790 -9.13738 -9.01796 -7.96421 -7.18463 -6.55106 -4.22336 1.76305 2.01689 2.68185 3.08580 3.11468 3.20620 3.27929 3.78755 4.07128 4.23543 4.26935 4.29814 4.38935 4.53121 4.68924 4.80638 4.85549 4.94188 4.97213 4.99996 5.07550 5.13266 5.32306 5.47840 5.50955 5.64826 5.68763 5.70635 5.76553 5.77187 5.89453 5.94739 6.03486 6.07581 6.37447 6.49404 6.61288 6.81479 6.88140 6.97821 7.11719 7.27012 7.45722 7.64695 7.86747 8.07776 8.66663 8.77924 9.32812 10.52229 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011492 B = 0.003113 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.838745 B = 8992.950136 C =11248.605177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.261 1.261 7 C -0.390 4.390 8 H 0.109 0.891 9 O -0.212 6.212 10 C 0.160 3.840 11 C -0.243 4.243 12 C 0.123 3.877 13 F -0.149 7.149 14 C -0.217 4.217 15 C -0.063 4.063 16 C 0.085 3.915 17 N -0.667 5.667 18 C 0.704 3.296 19 O -0.579 6.579 20 N -0.744 5.744 21 C 0.163 3.837 22 H 0.092 0.908 23 C -0.128 4.128 24 C -0.148 4.148 25 C 0.103 3.897 26 H 0.055 0.945 27 O -0.569 6.569 28 C -0.108 4.108 29 C -0.125 4.125 30 H 0.281 0.719 31 H 0.149 0.851 32 H 0.124 0.876 33 H 0.150 0.850 34 H 0.409 0.591 35 H 0.396 0.604 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.378 0.622 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.731 2.943 -0.534 21.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.465 4.465 8 H 0.126 0.874 9 O -0.117 6.117 10 C 0.106 3.894 11 C -0.263 4.263 12 C 0.103 3.897 13 F -0.128 7.128 14 C -0.237 4.237 15 C -0.084 4.084 16 C -0.010 4.010 17 N -0.313 5.313 18 C 0.405 3.595 19 O -0.457 6.457 20 N -0.398 5.398 21 C 0.058 3.942 22 H 0.110 0.890 23 C -0.167 4.167 24 C -0.186 4.186 25 C 0.044 3.956 26 H 0.073 0.927 27 O -0.375 6.375 28 C -0.146 4.146 29 C -0.163 4.163 30 H 0.092 0.908 31 H 0.167 0.833 32 H 0.142 0.858 33 H 0.168 0.832 34 H 0.244 0.756 35 H 0.230 0.770 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.225 0.775 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.097 0.903 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 21.605 2.714 0.484 21.781 hybrid contribution -0.238 0.949 -0.952 1.365 sum 21.367 3.662 -0.468 21.684 Atomic orbital electron populations 1.69643 1.05568 1.28678 1.47087 1.24467 0.95041 0.98786 0.95597 0.86189 0.80296 0.81553 0.78838 1.19755 1.20651 1.18506 1.20753 0.76375 0.96857 1.52554 0.87377 1.83482 1.23107 1.24718 1.80369 1.18394 0.89194 0.85915 0.95936 1.20952 1.02065 0.90038 1.13282 1.17464 0.89091 0.81326 1.01780 1.91424 1.77884 1.49433 1.94076 1.20564 0.91527 0.99043 1.12544 1.20800 1.00840 0.88885 0.97883 1.16699 0.86626 0.85808 1.11891 1.42263 1.16539 1.13362 1.59136 1.15867 0.80517 0.83583 0.79544 1.90860 1.74129 1.33980 1.46692 1.45174 1.17988 1.16857 1.59813 1.20833 0.80413 0.96323 0.96638 0.89023 1.21903 0.93753 1.02435 0.98625 1.22222 0.97188 0.97368 1.01863 1.21874 0.83214 0.95141 0.95363 0.92692 1.86508 1.18099 1.84924 1.47984 1.21384 0.92478 1.01812 0.98934 1.21774 0.96835 0.95963 1.01764 0.90833 0.83345 0.85773 0.83215 0.75624 0.76985 0.90638 0.91732 0.90704 0.91500 0.77541 0.90739 0.90724 0.90310 0.91097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.17 13.96 55.48 0.77 -23.39 16 2 C 0.07 1.73 5.49 -17.52 -0.10 1.63 16 3 Si 0.91 19.87 28.62 -169.99 -4.86 15.01 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.26 -5.55 7.11 56.52 0.40 -5.14 16 7 C -0.39 -10.34 9.94 30.88 0.31 -10.04 16 8 H 0.11 2.98 5.44 -52.48 -0.29 2.70 16 9 O -0.21 -5.06 8.00 0.04 0.00 -5.06 16 10 C 0.16 3.50 6.66 -38.94 -0.26 3.24 16 11 C -0.24 -5.24 9.14 -39.36 -0.36 -5.60 16 12 C 0.12 2.43 7.29 -39.43 -0.29 2.14 16 13 F -0.15 -2.87 17.26 2.25 0.04 -2.83 16 14 C -0.22 -3.89 10.02 -39.48 -0.40 -4.28 16 15 C -0.06 -1.16 8.71 -39.43 -0.34 -1.51 16 16 C 0.08 1.64 6.45 -83.44 -0.54 1.11 16 17 N -0.67 -11.10 5.30 -14.07 -0.07 -11.18 16 18 C 0.70 10.91 8.33 -86.92 -0.72 10.18 16 19 O -0.58 -10.54 13.17 5.29 0.07 -10.47 16 20 N -0.74 -8.30 5.08 -58.67 -0.30 -8.59 16 21 C 0.16 1.58 2.46 -67.93 -0.17 1.42 16 22 H 0.09 1.09 7.58 -51.93 -0.39 0.70 16 23 C -0.13 -1.13 5.50 -26.73 -0.15 -1.27 16 24 C -0.15 -1.10 5.54 -26.73 -0.15 -1.25 16 25 C 0.10 0.74 3.47 -26.73 -0.09 0.64 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 O -0.57 -4.43 13.32 -35.23 -0.47 -4.90 16 28 C -0.11 -0.81 5.57 -26.76 -0.15 -0.96 16 29 C -0.13 -0.92 5.39 -26.76 -0.14 -1.06 16 30 H 0.28 7.18 8.31 -40.82 -0.34 6.85 16 31 H 0.15 3.36 5.63 -52.48 -0.30 3.06 16 32 H 0.12 1.92 8.06 -52.49 -0.42 1.49 16 33 H 0.15 2.67 5.78 -52.49 -0.30 2.36 16 34 H 0.41 6.24 8.36 -40.82 -0.34 5.89 16 35 H 0.40 3.49 8.62 -40.82 -0.35 3.14 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.38 1.41 9.08 45.56 0.41 1.82 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 366.15 15.07 5.52 5.52 Total: -1.00 -30.82 366.15 -7.77 -38.59 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -4.92 Total: 12.92 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -3.55 Total: -5.61 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.40 Total: -43.17 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.40 Total: -20.44 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.04 Total: -2.83 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.86 Total: 15.01 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.82 -7.77 -38.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245523391.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.156 kcal (2) G-P(sol) polarization free energy of solvation -30.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds