Wall clock time and date at job start Tue Mar 31 2020 20:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31569 * 1 3 3 Si 1.86802 * 120.00231 * 2 1 4 4 H 1.48499 * 109.47301 * 270.00529 * 3 2 1 5 5 H 1.48504 * 109.46995 * 30.00235 * 3 2 1 6 6 H 1.48494 * 109.47127 * 150.00558 * 3 2 1 7 7 C 1.38634 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99813 * 359.97438 * 7 2 1 9 9 O 1.34801 * 120.00537 * 179.97438 * 7 2 1 10 10 C 1.35779 * 117.00180 * 174.98046 * 9 7 2 11 11 C 1.38737 * 120.09154 * 5.19655 * 10 9 7 12 12 C 1.38335 * 119.98270 * 179.97438 * 11 10 9 13 13 F 1.35100 * 119.92717 * 179.97438 * 12 11 10 14 14 C 1.38550 * 120.14879 * 359.97438 * 12 11 10 15 15 C 1.38202 * 120.17224 * 359.75204 * 14 12 11 16 16 C 1.38688 * 120.02414 * 0.50549 * 15 14 12 17 17 N 1.40130 * 120.07691 * 179.76831 * 16 15 14 18 18 C 1.34774 * 120.00043 * 335.23086 * 17 16 15 19 19 O 1.21589 * 120.00011 * 354.32793 * 18 17 16 20 20 N 1.34777 * 119.99951 * 174.32639 * 18 17 16 21 21 C 1.46505 * 120.00209 * 179.97438 * 20 18 17 22 22 H 1.08997 * 109.46623 * 325.00528 * 21 20 18 23 23 C 1.53004 * 109.46802 * 84.99936 * 21 20 18 24 24 C 1.52996 * 109.46926 * 179.97438 * 23 21 20 25 25 C 1.52998 * 109.47588 * 300.00487 * 24 23 21 26 26 H 1.09000 * 109.47032 * 300.00088 * 25 24 23 27 27 O 1.42895 * 109.47212 * 180.02562 * 25 24 23 28 28 C 1.52995 * 109.46997 * 59.99876 * 25 24 23 29 29 C 1.52995 * 109.47243 * 205.00358 * 21 20 18 30 30 H 0.97004 * 119.99999 * 359.97438 * 1 2 3 31 31 H 1.08010 * 120.00737 * 359.97438 * 11 10 9 32 32 H 1.07997 * 119.90940 * 179.97438 * 14 12 11 33 33 H 1.07999 * 119.98515 * 180.25101 * 15 14 12 34 34 H 0.96999 * 120.00037 * 155.22235 * 17 16 15 35 35 H 0.97001 * 120.00048 * 0.02562 * 20 18 17 36 36 H 1.09001 * 109.47540 * 300.00731 * 23 21 20 37 37 H 1.09000 * 109.46795 * 60.00398 * 23 21 20 38 38 H 1.09000 * 109.47006 * 60.00592 * 24 23 21 39 39 H 1.09005 * 109.46648 * 180.02562 * 24 23 21 40 40 H 0.96701 * 114.00411 * 59.99784 * 27 25 24 41 41 H 1.08998 * 109.47406 * 180.02562 * 28 25 24 42 42 H 1.09000 * 109.47056 * 60.00226 * 28 25 24 43 43 H 1.08996 * 109.47049 * 60.00483 * 29 21 20 44 44 H 1.09000 * 109.47204 * 300.00123 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4972 2.0465 -1.4000 5 1 1.4472 2.6527 0.7001 6 1 3.5473 1.4401 0.6999 7 6 2.0089 -1.2006 -0.0005 8 1 1.4689 -2.1359 -0.0005 9 8 3.3569 -1.2007 -0.0011 10 6 3.9733 -2.4059 0.1043 11 6 3.2239 -3.5734 0.0977 12 6 3.8543 -4.8001 0.2046 13 9 3.1234 -5.9363 0.1987 14 6 5.2336 -4.8662 0.3179 15 6 5.9867 -3.7074 0.3194 16 6 5.3617 -2.4735 0.2180 17 7 6.1239 -1.2976 0.2243 18 6 7.3392 -1.2854 0.8068 19 8 7.7313 -2.2619 1.4159 20 7 8.1199 -0.1907 0.7141 21 6 9.4408 -0.1771 1.3478 22 1 9.4039 -0.7461 2.2767 23 6 10.4659 -0.8083 0.4034 24 6 11.8454 -0.7936 1.0649 25 6 12.2511 0.6504 1.3665 26 1 12.2876 1.2192 0.4374 27 8 13.5398 0.6641 1.9837 28 6 11.2260 1.2815 2.3108 29 6 9.8467 1.2667 1.6498 30 1 -0.4850 0.8401 0.0004 31 1 2.1486 -3.5246 0.0092 32 1 5.7217 -5.8259 0.4015 33 1 7.0620 -3.7626 0.4037 34 1 5.7769 -0.4924 -0.1907 35 1 7.8070 0.5885 0.2285 36 1 10.1766 -1.8370 0.1882 37 1 10.5027 -0.2393 -0.5255 38 1 11.8089 -1.3624 1.9940 39 1 12.5758 -1.2429 0.3919 40 1 14.2405 0.2785 1.4401 41 1 11.5148 2.3104 2.5253 42 1 11.1895 0.7128 3.2399 43 1 9.1165 1.7163 2.3226 44 1 9.8836 1.8357 0.7209 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000245523391.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:09 Heat of formation + Delta-G solvation = -154.903550 kcal Electronic energy + Delta-G solvation = -29147.803470 eV Core-core repulsion = 24786.142168 eV Total energy + Delta-G solvation = -4361.661302 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -49.84254 -41.92181 -40.76325 -39.72857 -38.21171 -36.96545 -35.63261 -34.47734 -34.37176 -31.82486 -31.23354 -30.39290 -28.78582 -27.31057 -24.45799 -23.81318 -23.48366 -22.85225 -21.81413 -21.04986 -20.15475 -19.77834 -19.25144 -18.43187 -18.14171 -17.30164 -16.96678 -16.90517 -16.62617 -16.41777 -16.00561 -15.84632 -15.67964 -15.46329 -15.25113 -15.19853 -14.97851 -14.72344 -14.26697 -14.14617 -13.85150 -13.59696 -13.29527 -13.21826 -13.18949 -12.93268 -12.62165 -12.46584 -12.33417 -12.16470 -12.12105 -11.70802 -11.64884 -11.41035 -11.24511 -11.04600 -10.92155 -10.71892 -10.11687 -9.60976 -8.75007 -8.51181 -6.25466 0.17367 0.39922 1.33551 1.39193 1.51286 1.53944 1.99886 2.26862 2.65558 2.75623 3.02552 3.08428 3.37043 3.38685 3.64950 3.77165 3.89387 4.06980 4.13517 4.17612 4.26386 4.27480 4.34899 4.43379 4.48834 4.53127 4.70922 4.87941 4.93243 4.98029 5.07531 5.08389 5.15457 5.17318 5.17565 5.27491 5.30607 5.39154 5.46130 5.53874 5.61216 5.81782 5.93622 6.09417 6.80349 6.92738 6.93307 7.38810 7.48365 8.59836 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011492 B = 0.003113 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.838745 B = 8992.950136 C =11248.605177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.011 3.989 3 Si 0.974 3.026 4 H -0.259 1.259 5 H -0.276 1.276 6 H -0.249 1.249 7 C -0.402 4.402 8 H 0.079 0.921 9 O -0.221 6.221 10 C 0.135 3.865 11 C -0.253 4.253 12 C 0.112 3.888 13 F -0.147 7.147 14 C -0.189 4.189 15 C -0.063 4.063 16 C 0.098 3.902 17 N -0.667 5.667 18 C 0.703 3.297 19 O -0.607 6.607 20 N -0.724 5.724 21 C 0.161 3.839 22 H 0.066 0.934 23 C -0.122 4.122 24 C -0.142 4.142 25 C 0.105 3.895 26 H 0.072 0.928 27 O -0.587 6.587 28 C -0.109 4.109 29 C -0.115 4.115 30 H 0.286 0.714 31 H 0.127 0.873 32 H 0.159 0.841 33 H 0.164 0.836 34 H 0.416 0.584 35 H 0.412 0.588 36 H 0.052 0.948 37 H 0.081 0.919 38 H 0.057 0.943 39 H 0.082 0.918 40 H 0.394 0.606 41 H 0.081 0.919 42 H 0.059 0.941 43 H 0.078 0.922 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.126 4.138 -1.024 25.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.188 4.188 3 Si 0.795 3.205 4 H -0.183 1.183 5 H -0.201 1.201 6 H -0.173 1.173 7 C -0.477 4.477 8 H 0.096 0.904 9 O -0.128 6.128 10 C 0.082 3.918 11 C -0.274 4.274 12 C 0.092 3.908 13 F -0.126 7.126 14 C -0.209 4.209 15 C -0.084 4.084 16 C 0.002 3.998 17 N -0.314 5.314 18 C 0.404 3.596 19 O -0.487 6.487 20 N -0.379 5.379 21 C 0.056 3.944 22 H 0.084 0.916 23 C -0.161 4.161 24 C -0.181 4.181 25 C 0.047 3.953 26 H 0.090 0.910 27 O -0.396 6.396 28 C -0.147 4.147 29 C -0.153 4.153 30 H 0.095 0.905 31 H 0.144 0.856 32 H 0.177 0.823 33 H 0.181 0.819 34 H 0.252 0.748 35 H 0.248 0.752 36 H 0.071 0.929 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.101 0.899 40 H 0.244 0.756 41 H 0.099 0.901 42 H 0.078 0.922 43 H 0.097 0.903 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 25.062 3.913 -0.023 25.365 hybrid contribution -1.106 0.345 -0.760 1.385 sum 23.956 4.258 -0.783 24.344 Atomic orbital electron populations 1.69746 1.07281 1.29849 1.49208 1.25363 0.95873 1.02510 0.95078 0.85178 0.79192 0.76582 0.79594 1.18326 1.20146 1.17269 1.20641 0.77676 0.96215 1.53217 0.90388 1.83429 1.21400 1.25465 1.82483 1.18691 0.90253 0.85473 0.97351 1.20956 1.01291 0.91349 1.13823 1.17501 0.89875 0.80715 1.02710 1.91428 1.78022 1.49007 1.94126 1.20952 0.90486 1.00540 1.08886 1.21033 1.01438 0.88490 0.97432 1.16830 0.85841 0.87376 1.09753 1.42268 1.16815 1.12847 1.59470 1.15984 0.80223 0.84268 0.79117 1.90835 1.74568 1.35403 1.47862 1.45097 1.17842 1.16016 1.58986 1.20968 0.79795 0.97894 0.95741 0.91565 1.21824 0.94006 1.01131 0.99142 1.22171 0.96789 0.97819 1.01282 1.21864 0.82958 0.94740 0.95745 0.90997 1.86472 1.18791 1.85217 1.49104 1.21394 0.92774 1.02033 0.98541 1.21705 0.96641 0.94182 1.02796 0.90465 0.85566 0.82319 0.81925 0.74764 0.75192 0.92943 0.90017 0.92389 0.89934 0.75604 0.90056 0.92200 0.90300 0.88914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.96 13.96 21.61 0.30 -52.66 16 2 C 0.01 0.59 5.49 84.83 0.47 1.05 16 3 Si 0.97 40.86 28.62 68.60 1.96 42.82 16 4 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 5 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 6 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 7 C -0.40 -22.21 9.94 67.91 0.68 -21.54 16 8 H 0.08 4.65 5.44 -2.91 -0.02 4.63 16 9 O -0.22 -10.76 8.00 -22.77 -0.18 -10.94 16 10 C 0.13 5.96 6.66 22.69 0.15 6.11 16 11 C -0.25 -11.28 9.14 22.41 0.20 -11.07 16 12 C 0.11 4.35 7.29 22.37 0.16 4.52 16 13 F -0.15 -5.57 17.26 44.97 0.78 -4.79 16 14 C -0.19 -6.33 10.02 22.34 0.22 -6.11 16 15 C -0.06 -2.19 8.71 22.37 0.19 -1.99 16 16 C 0.10 3.70 6.45 38.22 0.25 3.95 16 17 N -0.67 -21.11 5.30 -316.71 -1.68 -22.79 16 18 C 0.70 20.49 8.33 179.06 1.49 21.98 16 19 O -0.61 -21.20 13.17 -4.00 -0.05 -21.25 16 20 N -0.72 -14.42 5.08 -457.81 -2.33 -16.74 16 21 C 0.16 2.80 2.46 44.99 0.11 2.91 16 22 H 0.07 1.53 7.58 -2.39 -0.02 1.51 16 23 C -0.12 -1.87 5.50 30.59 0.17 -1.70 16 24 C -0.14 -1.81 5.54 30.59 0.17 -1.64 16 25 C 0.11 1.22 3.47 30.59 0.11 1.33 16 26 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 27 O -0.59 -7.77 13.32 -148.98 -1.98 -9.75 16 28 C -0.11 -1.40 5.57 30.58 0.17 -1.23 16 29 C -0.12 -1.37 5.39 30.58 0.16 -1.20 16 30 H 0.29 15.05 8.31 -92.71 -0.77 14.28 16 31 H 0.13 6.15 5.63 -2.91 -0.02 6.14 16 32 H 0.16 4.26 8.06 -2.91 -0.02 4.24 16 33 H 0.16 5.37 5.78 -2.91 -0.02 5.35 16 34 H 0.42 11.90 8.36 -92.71 -0.78 11.13 16 35 H 0.41 5.90 8.62 -92.71 -0.80 5.10 16 36 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 40 H 0.39 1.95 9.08 -74.06 -0.67 1.27 16 41 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -68.75 366.15 0.36 -68.39 By element: Atomic # 1 Polarization: 33.52 SS G_CDS: -1.16 Total: 32.36 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: 4.71 Total: -4.65 kcal Atomic # 7 Polarization: -88.48 SS G_CDS: -3.70 Total: -92.19 kcal Atomic # 8 Polarization: -39.72 SS G_CDS: -2.22 Total: -41.94 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 0.78 Total: -4.79 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 1.96 Total: 42.82 kcal Total: -68.75 0.36 -68.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245523391.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.515 kcal (2) G-P(sol) polarization free energy of solvation -68.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds