Wall clock time and date at job start Tue Mar 31 2020 20:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86799 * 119.99739 * 2 1 4 4 H 1.48499 * 109.47054 * 239.99964 * 3 2 1 5 5 H 1.48496 * 109.47292 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47394 * 119.99983 * 3 2 1 7 7 C 1.38651 * 120.00526 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00362 * 180.02562 * 7 2 1 9 9 O 1.34835 * 119.99539 * 0.02562 * 7 2 1 10 10 C 1.35751 * 116.99903 * 185.34687 * 9 7 2 11 11 C 1.38945 * 120.03383 * 171.45772 * 10 9 7 12 12 C 1.38123 * 120.07081 * 179.77082 * 11 10 9 13 13 C 1.38207 * 120.13867 * 0.51120 * 12 11 10 14 14 C 1.38916 * 120.06054 * 359.74168 * 13 12 11 15 15 N 1.39950 * 120.03256 * 179.97438 * 14 13 12 16 16 C 1.34781 * 119.99420 * 25.41342 * 15 14 13 17 17 O 1.21586 * 120.00530 * 351.01712 * 16 15 14 18 18 N 1.34781 * 119.99336 * 171.01827 * 16 15 14 19 19 C 1.46918 * 120.63490 * 5.48357 * 18 16 15 20 20 C 1.53190 * 108.77676 * 233.58612 * 19 18 16 21 21 C 1.53046 * 109.31081 * 305.36297 * 20 19 18 22 22 C 1.53035 * 109.53804 * 61.36627 * 21 20 19 23 23 F 1.39900 * 109.50139 * 58.61828 * 22 21 20 24 24 C 1.53001 * 109.49861 * 178.68278 * 22 21 20 25 25 O 1.42900 * 109.47241 * 179.97438 * 24 22 21 26 26 C 1.46935 * 120.62457 * 185.20240 * 18 16 15 27 27 C 1.38730 * 120.03212 * 351.73780 * 10 9 7 28 28 H 0.96997 * 120.00253 * 0.02562 * 1 2 3 29 29 H 1.08001 * 119.96524 * 0.02562 * 11 10 9 30 30 H 1.08001 * 119.93608 * 180.25724 * 12 11 10 31 31 H 1.07997 * 119.96817 * 179.76945 * 13 12 11 32 32 H 0.96991 * 120.00226 * 205.41152 * 15 14 13 33 33 H 1.09002 * 109.58700 * 353.37104 * 19 18 16 34 34 H 1.08999 * 109.58680 * 113.79850 * 19 18 16 35 35 H 1.09000 * 109.50187 * 65.31153 * 20 19 18 36 36 H 1.08994 * 109.50176 * 185.41396 * 20 19 18 37 37 H 1.09003 * 109.45788 * 181.38758 * 21 20 19 38 38 H 1.09000 * 109.45924 * 301.34436 * 21 20 19 39 39 H 1.08994 * 109.47244 * 299.99713 * 24 22 21 40 40 H 1.09000 * 109.46661 * 59.99899 * 24 22 21 41 41 H 0.96697 * 114.00417 * 180.02562 * 25 24 22 42 42 H 1.09002 * 109.58270 * 246.19808 * 26 18 16 43 43 H 1.08992 * 109.58536 * 6.62460 * 26 18 16 44 44 H 1.08000 * 120.07580 * 0.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1032 1.6965 -1.2125 5 1 1.2845 2.7464 -0.0006 6 1 3.1033 1.6965 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3348 -2.3684 0.0005 10 6 2.0696 -3.5042 0.1138 11 6 1.4359 -4.7268 0.2991 12 6 2.1826 -5.8836 0.4097 13 6 3.5621 -5.8277 0.3470 14 6 4.2017 -4.6077 0.1671 15 7 5.5986 -4.5518 0.1042 16 6 6.2991 -5.6328 -0.2923 17 8 5.7375 -6.7014 -0.4379 18 7 7.6222 -5.5294 -0.5273 19 6 8.3377 -4.2784 -0.2418 20 6 9.0901 -3.8418 -1.5027 21 6 9.9892 -4.9858 -1.9772 22 6 9.1286 -6.2024 -2.3252 23 9 8.2094 -5.8549 -3.3210 24 6 10.0252 -7.3345 -2.8306 25 8 9.2211 -8.4705 -3.1548 26 6 8.3776 -6.6676 -1.0684 27 6 3.4541 -3.4447 0.0504 28 1 -0.4850 0.8400 -0.0004 29 1 0.3582 -4.7732 0.3527 30 1 1.6876 -6.8332 0.5496 31 1 4.1434 -6.7334 0.4375 32 1 6.0627 -3.7351 0.3460 33 1 7.6235 -3.5059 0.0434 34 1 9.0474 -4.4403 0.5695 35 1 8.3740 -3.5930 -2.2859 36 1 9.7016 -2.9681 -1.2774 37 1 10.5443 -4.6691 -2.8602 38 1 10.6887 -5.2506 -1.1844 39 1 10.5622 -7.0035 -3.7195 40 1 10.7403 -7.6057 -2.0540 41 1 9.7246 -9.2283 -3.4823 42 1 9.0905 -7.0204 -0.3230 43 1 7.6897 -7.4720 -1.3286 44 1 3.9492 -2.4950 -0.0887 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287132169.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:25 Heat of formation + Delta-G solvation = -106.510248 kcal Electronic energy + Delta-G solvation = -29641.979506 eV Core-core repulsion = 25282.416695 eV Total energy + Delta-G solvation = -4359.562811 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -47.83143 -40.68270 -38.90885 -37.94292 -36.93287 -36.20274 -34.35565 -33.11812 -32.16459 -31.66486 -29.28585 -28.45433 -26.54966 -25.85925 -25.17892 -22.72502 -22.07451 -21.76624 -20.60631 -19.56500 -18.63229 -17.87681 -17.82135 -17.19509 -16.55160 -16.15023 -15.69243 -15.61499 -15.38753 -15.00393 -14.88102 -14.40432 -14.33623 -14.26665 -13.91964 -13.72082 -13.52722 -13.33386 -13.21216 -12.88357 -12.82757 -12.40081 -12.26977 -11.83747 -11.68666 -11.56772 -11.49988 -11.21309 -11.00002 -10.96074 -10.88746 -10.74473 -10.54017 -10.43603 -9.88793 -9.44868 -9.31947 -8.87431 -8.73963 -7.60162 -7.04405 -6.39612 -3.99510 2.14863 2.44044 2.52457 3.13484 3.14334 3.17804 3.27861 3.46745 3.77852 3.99559 4.07280 4.13140 4.19596 4.44707 4.52087 4.62472 4.69891 4.86515 4.93787 4.97331 5.05116 5.14473 5.21745 5.36912 5.38973 5.41717 5.58919 5.60966 5.78898 5.86289 6.10720 6.16508 6.16833 6.31616 6.45788 6.58283 6.85600 7.08213 7.14336 7.18382 7.25474 7.45163 7.51748 7.93080 8.00665 8.05400 8.60931 9.05628 9.77779 10.78672 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014526 B = 0.002905 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.165362 B = 9636.615892 C =10951.990490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.039 3.961 3 Si 0.939 3.061 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.271 1.271 7 C -0.391 4.391 8 H 0.088 0.912 9 O -0.179 6.179 10 C 0.171 3.829 11 C -0.204 4.204 12 C -0.063 4.063 13 C -0.221 4.221 14 C 0.196 3.804 15 N -0.678 5.678 16 C 0.711 3.289 17 O -0.562 6.562 18 N -0.629 5.629 19 C 0.106 3.894 20 C -0.137 4.137 21 C -0.138 4.138 22 C 0.109 3.891 23 F -0.192 7.192 24 C 0.059 3.941 25 O -0.560 6.560 26 C 0.118 3.882 27 C -0.263 4.263 28 H 0.270 0.730 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.145 0.855 32 H 0.401 0.599 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.383 0.617 42 H 0.080 0.920 43 H 0.114 0.886 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.397 -10.347 -1.917 27.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.165 4.165 3 Si 0.764 3.236 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.467 4.467 8 H 0.106 0.894 9 O -0.082 6.082 10 C 0.117 3.883 11 C -0.224 4.224 12 C -0.082 4.082 13 C -0.241 4.241 14 C 0.102 3.898 15 N -0.325 5.325 16 C 0.414 3.586 17 O -0.438 6.438 18 N -0.367 5.367 19 C -0.017 4.017 20 C -0.175 4.175 21 C -0.175 4.175 22 C 0.089 3.911 23 F -0.172 7.172 24 C -0.020 4.020 25 O -0.366 6.366 26 C -0.006 4.006 27 C -0.285 4.285 28 H 0.080 0.920 29 H 0.135 0.865 30 H 0.133 0.867 31 H 0.163 0.837 32 H 0.238 0.762 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.231 0.769 42 H 0.098 0.902 43 H 0.132 0.868 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 24.079 -10.488 -1.896 26.333 hybrid contribution 1.333 1.136 -0.247 1.768 sum 25.412 -9.353 -2.143 27.163 Atomic orbital electron populations 1.70026 1.05900 1.27629 1.46410 1.25253 0.95814 0.98700 0.96739 0.85816 0.78722 0.80050 0.79003 1.19622 1.20312 1.19604 1.21203 0.91572 0.80952 1.53020 0.89423 1.84005 1.33926 1.11293 1.79010 1.19012 0.89260 0.88195 0.91855 1.20276 0.99737 0.90592 1.11813 1.20612 0.93294 0.96694 0.97624 1.21256 0.94559 0.97622 1.10691 1.17310 0.79667 0.94581 0.98260 1.42715 1.05891 1.14642 1.69230 1.15763 0.80735 0.84242 0.77904 1.90826 1.67712 1.26957 1.58301 1.47219 1.06711 1.14154 1.68651 1.21727 0.96490 0.86121 0.97401 1.21901 0.99341 0.97869 0.98418 1.22058 0.98066 0.94459 1.02961 1.21456 0.88224 0.94277 0.87111 1.92911 1.68427 1.93207 1.62668 1.22681 0.92651 0.86805 0.99870 1.86584 1.37291 1.24732 1.87965 1.22005 0.96296 0.89496 0.92813 1.20678 0.93992 0.97375 1.16457 0.92049 0.86523 0.86694 0.83735 0.76180 0.89883 0.90745 0.90287 0.89601 0.90129 0.89624 0.92160 0.91684 0.76905 0.90196 0.86752 0.85501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.63 13.67 55.48 0.76 -24.87 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.49 29.55 -169.99 -5.02 15.47 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 6 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.39 -11.01 9.49 30.88 0.29 -10.72 16 8 H 0.09 2.26 5.23 -52.49 -0.27 1.99 16 9 O -0.18 -5.19 9.76 0.03 0.00 -5.19 16 10 C 0.17 4.28 6.64 -39.14 -0.26 4.02 16 11 C -0.20 -4.59 9.99 -39.36 -0.39 -4.99 16 12 C -0.06 -1.27 10.03 -39.63 -0.40 -1.67 16 13 C -0.22 -4.56 8.86 -39.34 -0.35 -4.91 16 14 C 0.20 3.99 6.47 -83.71 -0.54 3.45 16 15 N -0.68 -11.17 5.27 -14.24 -0.08 -11.25 16 16 C 0.71 11.80 8.20 -86.91 -0.71 11.09 16 17 O -0.56 -11.24 12.61 5.29 0.07 -11.17 16 18 N -0.63 -7.68 2.95 -178.23 -0.53 -8.20 16 19 C 0.11 0.88 6.42 -3.72 -0.02 0.86 16 20 C -0.14 -1.00 5.96 -26.61 -0.16 -1.16 16 21 C -0.14 -0.86 4.97 -26.69 -0.13 -1.00 16 22 C 0.11 1.02 1.04 -90.28 -0.09 0.92 16 23 F -0.19 -2.69 16.15 2.25 0.04 -2.65 16 24 C 0.06 0.39 6.23 37.16 0.23 0.62 16 25 O -0.56 -4.77 13.06 -35.23 -0.46 -5.23 16 26 C 0.12 1.28 5.26 -3.48 -0.02 1.26 16 27 C -0.26 -5.90 9.05 -39.21 -0.35 -6.26 16 28 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 30 H 0.12 1.94 8.06 -52.49 -0.42 1.52 16 31 H 0.15 3.01 5.35 -52.49 -0.28 2.73 16 32 H 0.40 5.32 6.27 -40.82 -0.26 5.07 16 33 H 0.08 0.67 5.59 -51.93 -0.29 0.38 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.78 7.74 -51.93 -0.40 0.37 16 36 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.38 1.29 9.12 45.56 0.42 1.70 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.11 1.62 6.77 -51.93 -0.35 1.27 16 44 H 0.13 2.76 5.68 -52.49 -0.30 2.46 16 LS Contribution 361.57 15.07 5.45 5.45 Total: -1.00 -37.33 361.57 -7.46 -44.79 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -4.68 Total: 10.36 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -3.01 Total: -7.50 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: 0.16 Total: -44.32 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.39 Total: -21.60 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.04 Total: -2.65 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -37.33 -7.46 -44.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287132169.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.723 kcal (2) G-P(sol) polarization free energy of solvation -37.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds