Wall clock time and date at job start Tue Mar 31 2020 20:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86807 * 119.99912 * 2 1 4 4 H 1.48503 * 109.47072 * 269.99690 * 3 2 1 5 5 H 1.48500 * 109.46869 * 30.00227 * 3 2 1 6 6 H 1.48506 * 109.46796 * 149.99864 * 3 2 1 7 7 C 1.38651 * 120.00250 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00047 * 180.02562 * 7 2 1 9 9 O 1.34832 * 119.99699 * 359.97438 * 7 2 1 10 10 C 1.35754 * 116.99796 * 185.03894 * 9 7 2 11 11 C 1.38952 * 120.02950 * 174.74410 * 10 9 7 12 12 C 1.38128 * 120.06470 * 179.97438 * 11 10 9 13 13 C 1.38194 * 120.14225 * 0.02562 * 12 11 10 14 14 C 1.38915 * 120.06803 * 0.02562 * 13 12 11 15 15 N 1.39946 * 120.03963 * 179.97438 * 14 13 12 16 16 C 1.34777 * 119.99472 * 34.75257 * 15 14 13 17 17 O 1.21586 * 120.00369 * 5.46761 * 16 15 14 18 18 N 1.34781 * 119.99422 * 185.47043 * 16 15 14 19 19 C 1.46918 * 120.63322 * 354.95610 * 18 16 15 20 20 C 1.53196 * 108.89429 * 126.47031 * 19 18 16 21 21 C 1.53039 * 109.31110 * 54.56165 * 20 19 18 22 22 C 1.53041 * 109.53984 * 298.63443 * 21 20 19 23 23 F 1.39896 * 109.49874 * 301.41701 * 22 21 20 24 24 C 1.52994 * 109.49695 * 181.34932 * 22 21 20 25 25 O 1.42907 * 109.47106 * 180.02562 * 24 22 21 26 26 C 1.46961 * 120.64900 * 174.78161 * 18 16 15 27 27 C 1.38732 * 120.03771 * 355.00112 * 10 9 7 28 28 H 0.97005 * 119.99997 * 0.02562 * 1 2 3 29 29 H 1.07994 * 119.96889 * 359.97438 * 11 10 9 30 30 H 1.07999 * 119.93003 * 180.02562 * 12 11 10 31 31 H 1.08004 * 119.96968 * 180.02562 * 13 12 11 32 32 H 0.97004 * 120.00401 * 214.74766 * 15 14 13 33 33 H 1.09002 * 109.59136 * 6.60904 * 19 18 16 34 34 H 1.09001 * 109.58717 * 246.32579 * 19 18 16 35 35 H 1.08997 * 109.49631 * 174.51672 * 20 19 18 36 36 H 1.09003 * 109.49286 * 294.61159 * 20 19 18 37 37 H 1.08994 * 109.46239 * 58.66115 * 21 20 19 38 38 H 1.09004 * 109.45944 * 178.63022 * 21 20 19 39 39 H 1.09000 * 109.47583 * 300.00123 * 24 22 21 40 40 H 1.09000 * 109.47446 * 60.00874 * 24 22 21 41 41 H 0.96697 * 113.99914 * 180.02562 * 25 24 22 42 42 H 1.08996 * 109.47187 * 113.74492 * 26 18 16 43 43 H 1.08999 * 109.71450 * 353.45727 * 26 18 16 44 44 H 1.08004 * 120.06982 * 0.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4469 2.6527 0.7001 6 1 3.5471 1.4402 0.7001 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0001 9 8 1.3346 -2.3684 -0.0005 10 6 2.0700 -3.5046 0.1052 11 6 1.4355 -4.7353 0.2216 12 6 2.1831 -5.8919 0.3286 13 6 3.5636 -5.8291 0.3209 14 6 4.2038 -4.6016 0.2059 15 7 5.6019 -4.5387 0.1986 16 6 6.3177 -5.5241 -0.3785 17 8 5.7503 -6.4161 -0.9790 18 7 7.6626 -5.5206 -0.2898 19 6 8.3686 -4.3944 0.3361 20 6 9.2941 -4.9356 1.4304 21 6 10.2158 -6.0010 0.8324 22 6 9.3754 -7.1608 0.2934 23 9 8.6065 -7.7014 1.3296 24 6 10.2993 -8.2404 -0.2738 25 8 9.5139 -9.3229 -0.7774 26 6 8.4509 -6.6448 -0.8138 27 6 3.4557 -3.4377 0.1025 28 1 -0.4850 0.8401 -0.0004 29 1 0.3569 -4.7876 0.2283 30 1 1.6876 -6.8473 0.4186 31 1 4.1453 -6.7352 0.4044 32 1 6.0557 -3.7859 0.6089 33 1 7.6448 -3.7083 0.7760 34 1 8.9590 -3.8702 -0.4154 35 1 9.8944 -4.1207 1.8350 36 1 8.6958 -5.3777 2.2270 37 1 10.7961 -5.5644 0.0196 38 1 10.8920 -6.3704 1.6035 39 1 10.8973 -7.8192 -1.0818 40 1 10.9584 -8.6052 0.5140 41 1 10.0352 -10.0456 -1.1530 42 1 9.0482 -6.3063 -1.6604 43 1 7.7830 -7.4443 -1.1343 44 1 3.9512 -2.4819 0.0167 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287132175.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:30 Heat of formation + Delta-G solvation = -111.499515 kcal Electronic energy + Delta-G solvation = -29557.077730 eV Core-core repulsion = 25197.298569 eV Total energy + Delta-G solvation = -4359.779162 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -47.87040 -40.62155 -38.93175 -37.93512 -36.92879 -36.23897 -34.31585 -33.10608 -32.18753 -31.68141 -29.30482 -28.48738 -26.55408 -25.86836 -25.21325 -22.73159 -22.08606 -21.75434 -20.57209 -19.56464 -18.62535 -17.88025 -17.85844 -17.24967 -16.60011 -16.13137 -15.66131 -15.61795 -15.35693 -15.04878 -14.86381 -14.45310 -14.30307 -14.06371 -13.93062 -13.89223 -13.55994 -13.35721 -13.21563 -12.91784 -12.83494 -12.43941 -12.26388 -11.85289 -11.70968 -11.54393 -11.48597 -11.10542 -11.02203 -10.93977 -10.90109 -10.71276 -10.55219 -10.43473 -9.96925 -9.58092 -9.41680 -8.83799 -8.76784 -7.65517 -7.08245 -6.41634 -4.01260 2.09446 2.43282 2.55114 3.12697 3.12861 3.17905 3.30551 3.45250 3.80154 3.98010 4.05602 4.13300 4.18473 4.43823 4.50541 4.61430 4.66792 4.86462 4.92485 4.97133 5.04963 5.13459 5.22974 5.33502 5.37491 5.40561 5.57081 5.61740 5.77625 5.83500 6.06054 6.14306 6.19112 6.31215 6.37765 6.59054 6.81862 7.05976 7.13024 7.14892 7.27157 7.39919 7.47948 7.88338 7.97287 8.03143 8.64685 9.03788 9.75374 10.76631 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017465 B = 0.002697 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.839110 B =10377.896065 C =11569.123722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.391 4.391 8 H 0.090 0.910 9 O -0.177 6.177 10 C 0.169 3.831 11 C -0.201 4.201 12 C -0.062 4.062 13 C -0.202 4.202 14 C 0.198 3.802 15 N -0.682 5.682 16 C 0.710 3.290 17 O -0.563 6.563 18 N -0.629 5.629 19 C 0.106 3.894 20 C -0.136 4.136 21 C -0.138 4.138 22 C 0.110 3.890 23 F -0.193 7.193 24 C 0.059 3.941 25 O -0.560 6.560 26 C 0.117 3.883 27 C -0.258 4.258 28 H 0.269 0.731 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.400 0.600 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.384 0.616 42 H 0.079 0.921 43 H 0.114 0.886 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.370 -11.009 1.302 27.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.200 1.200 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.468 4.468 8 H 0.107 0.893 9 O -0.081 6.081 10 C 0.115 3.885 11 C -0.221 4.221 12 C -0.081 4.081 13 C -0.223 4.223 14 C 0.104 3.896 15 N -0.331 5.331 16 C 0.412 3.588 17 O -0.439 6.439 18 N -0.368 5.368 19 C -0.018 4.018 20 C -0.174 4.174 21 C -0.176 4.176 22 C 0.090 3.910 23 F -0.174 7.174 24 C -0.020 4.020 25 O -0.366 6.366 26 C -0.007 4.007 27 C -0.280 4.280 28 H 0.079 0.921 29 H 0.136 0.864 30 H 0.134 0.866 31 H 0.137 0.863 32 H 0.238 0.762 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.231 0.769 42 H 0.097 0.903 43 H 0.132 0.868 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 24.033 -11.077 1.072 26.484 hybrid contribution 1.392 0.942 0.112 1.684 sum 25.424 -10.135 1.185 27.395 Atomic orbital electron populations 1.70037 1.05910 1.27551 1.46350 1.25262 0.95820 0.98730 0.96700 0.85737 0.78846 0.80303 0.78631 1.19960 1.20282 1.19331 1.21261 0.91643 0.80920 1.52943 0.89303 1.84010 1.33902 1.11304 1.78872 1.19045 0.89320 0.88153 0.91961 1.20244 0.99701 0.90251 1.11884 1.20525 0.93012 0.96867 0.97726 1.20569 0.94329 0.96289 1.11120 1.17183 0.79806 0.94190 0.98391 1.42766 1.05509 1.24830 1.59949 1.15727 0.80841 0.82642 0.79547 1.90950 1.68946 1.37807 1.46157 1.47160 1.04225 1.21549 1.63815 1.21718 0.95977 0.88536 0.95524 1.21896 0.98130 0.98775 0.98628 1.22060 0.98141 0.95274 1.02102 1.21382 0.90813 0.92418 0.86366 1.92899 1.77253 1.87275 1.59929 1.22680 0.92785 0.88171 0.98368 1.86583 1.36862 1.31515 1.81632 1.21907 0.94611 0.90173 0.93970 1.20762 0.93933 0.97417 1.15848 0.92076 0.86392 0.86616 0.86324 0.76230 0.89891 0.90750 0.89611 0.90390 0.89581 0.90146 0.91647 0.92154 0.76883 0.90258 0.86773 0.85371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.44 13.67 55.48 0.76 -24.69 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.40 29.55 -169.99 -5.02 15.38 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.39 -10.95 9.49 30.88 0.29 -10.66 16 8 H 0.09 2.28 5.20 -52.49 -0.27 2.01 16 9 O -0.18 -5.12 9.76 0.03 0.00 -5.12 16 10 C 0.17 4.21 6.65 -39.13 -0.26 3.95 16 11 C -0.20 -4.47 9.99 -39.36 -0.39 -4.87 16 12 C -0.06 -1.24 10.03 -39.64 -0.40 -1.64 16 13 C -0.20 -4.17 8.65 -39.35 -0.34 -4.51 16 14 C 0.20 4.03 6.25 -83.71 -0.52 3.50 16 15 N -0.68 -11.32 5.25 -14.24 -0.07 -11.40 16 16 C 0.71 12.02 8.02 -86.91 -0.70 11.32 16 17 O -0.56 -11.71 13.57 5.29 0.07 -11.64 16 18 N -0.63 -7.79 2.96 -178.47 -0.53 -8.32 16 19 C 0.11 0.89 6.43 -3.71 -0.02 0.86 16 20 C -0.14 -0.93 5.97 -26.61 -0.16 -1.09 16 21 C -0.14 -0.83 4.97 -26.69 -0.13 -0.96 16 22 C 0.11 1.00 1.03 -90.50 -0.09 0.90 16 23 F -0.19 -2.57 16.14 2.25 0.04 -2.53 16 24 C 0.06 0.38 6.24 37.15 0.23 0.61 16 25 O -0.56 -4.68 13.05 -35.23 -0.46 -5.14 16 26 C 0.12 1.30 5.21 -3.69 -0.02 1.28 16 27 C -0.26 -5.76 9.08 -39.21 -0.36 -6.12 16 28 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 30 H 0.12 1.94 8.06 -52.49 -0.42 1.52 16 31 H 0.12 2.47 6.52 -52.48 -0.34 2.13 16 32 H 0.40 5.33 6.28 -40.82 -0.26 5.08 16 33 H 0.08 0.67 5.57 -51.93 -0.29 0.38 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.70 7.73 -51.93 -0.40 0.30 16 37 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.38 1.24 9.12 45.56 0.42 1.66 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.11 1.65 6.77 -51.93 -0.35 1.29 16 44 H 0.13 2.79 5.63 -52.48 -0.30 2.49 16 LS Contribution 363.02 15.07 5.47 5.47 Total: -1.00 -37.29 363.02 -7.45 -44.74 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -4.73 Total: 9.69 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -2.97 Total: -6.45 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: 0.16 Total: -44.41 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.39 Total: -21.90 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.04 Total: -2.53 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -37.29 -7.45 -44.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287132175.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.761 kcal (2) G-P(sol) polarization free energy of solvation -37.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds