Wall clock time and date at job start Tue Mar 31 2020 20:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86807 * 119.99912 * 2 1 4 4 H 1.48503 * 109.47072 * 269.99690 * 3 2 1 5 5 H 1.48500 * 109.46869 * 30.00227 * 3 2 1 6 6 H 1.48506 * 109.46796 * 149.99864 * 3 2 1 7 7 C 1.38651 * 120.00250 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00047 * 180.02562 * 7 2 1 9 9 O 1.34832 * 119.99699 * 359.97438 * 7 2 1 10 10 C 1.35754 * 116.99796 * 185.03894 * 9 7 2 11 11 C 1.38952 * 120.02950 * 174.74410 * 10 9 7 12 12 C 1.38128 * 120.06470 * 179.97438 * 11 10 9 13 13 C 1.38194 * 120.14225 * 0.02562 * 12 11 10 14 14 C 1.38915 * 120.06803 * 0.02562 * 13 12 11 15 15 N 1.39946 * 120.03963 * 179.97438 * 14 13 12 16 16 C 1.34777 * 119.99472 * 34.75257 * 15 14 13 17 17 O 1.21586 * 120.00369 * 5.46761 * 16 15 14 18 18 N 1.34781 * 119.99422 * 185.47043 * 16 15 14 19 19 C 1.46918 * 120.63322 * 354.95610 * 18 16 15 20 20 C 1.53196 * 108.89429 * 126.47031 * 19 18 16 21 21 C 1.53039 * 109.31110 * 54.56165 * 20 19 18 22 22 C 1.53041 * 109.53984 * 298.63443 * 21 20 19 23 23 F 1.39896 * 109.49874 * 301.41701 * 22 21 20 24 24 C 1.52994 * 109.49695 * 181.34932 * 22 21 20 25 25 O 1.42907 * 109.47106 * 180.02562 * 24 22 21 26 26 C 1.46961 * 120.64900 * 174.78161 * 18 16 15 27 27 C 1.38732 * 120.03771 * 355.00112 * 10 9 7 28 28 H 0.97005 * 119.99997 * 0.02562 * 1 2 3 29 29 H 1.07994 * 119.96889 * 359.97438 * 11 10 9 30 30 H 1.07999 * 119.93003 * 180.02562 * 12 11 10 31 31 H 1.08004 * 119.96968 * 180.02562 * 13 12 11 32 32 H 0.97004 * 120.00401 * 214.74766 * 15 14 13 33 33 H 1.09002 * 109.59136 * 6.60904 * 19 18 16 34 34 H 1.09001 * 109.58717 * 246.32579 * 19 18 16 35 35 H 1.08997 * 109.49631 * 174.51672 * 20 19 18 36 36 H 1.09003 * 109.49286 * 294.61159 * 20 19 18 37 37 H 1.08994 * 109.46239 * 58.66115 * 21 20 19 38 38 H 1.09004 * 109.45944 * 178.63022 * 21 20 19 39 39 H 1.09000 * 109.47583 * 300.00123 * 24 22 21 40 40 H 1.09000 * 109.47446 * 60.00874 * 24 22 21 41 41 H 0.96697 * 113.99914 * 180.02562 * 25 24 22 42 42 H 1.08996 * 109.47187 * 113.74492 * 26 18 16 43 43 H 1.08999 * 109.71450 * 353.45727 * 26 18 16 44 44 H 1.08004 * 120.06982 * 0.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4469 2.6527 0.7001 6 1 3.5471 1.4402 0.7001 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0001 9 8 1.3346 -2.3684 -0.0005 10 6 2.0700 -3.5046 0.1052 11 6 1.4355 -4.7353 0.2216 12 6 2.1831 -5.8919 0.3286 13 6 3.5636 -5.8291 0.3209 14 6 4.2038 -4.6016 0.2059 15 7 5.6019 -4.5387 0.1986 16 6 6.3177 -5.5241 -0.3785 17 8 5.7503 -6.4161 -0.9790 18 7 7.6626 -5.5206 -0.2898 19 6 8.3686 -4.3944 0.3361 20 6 9.2941 -4.9356 1.4304 21 6 10.2158 -6.0010 0.8324 22 6 9.3754 -7.1608 0.2934 23 9 8.6065 -7.7014 1.3296 24 6 10.2993 -8.2404 -0.2738 25 8 9.5139 -9.3229 -0.7774 26 6 8.4509 -6.6448 -0.8138 27 6 3.4557 -3.4377 0.1025 28 1 -0.4850 0.8401 -0.0004 29 1 0.3569 -4.7876 0.2283 30 1 1.6876 -6.8473 0.4186 31 1 4.1453 -6.7352 0.4044 32 1 6.0557 -3.7859 0.6089 33 1 7.6448 -3.7083 0.7760 34 1 8.9590 -3.8702 -0.4154 35 1 9.8944 -4.1207 1.8350 36 1 8.6958 -5.3777 2.2270 37 1 10.7961 -5.5644 0.0196 38 1 10.8920 -6.3704 1.6035 39 1 10.8973 -7.8192 -1.0818 40 1 10.9584 -8.6052 0.5140 41 1 10.0352 -10.0456 -1.1530 42 1 9.0482 -6.3063 -1.6604 43 1 7.7830 -7.4443 -1.1343 44 1 3.9512 -2.4819 0.0167 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287132175.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:29 Heat of formation + Delta-G solvation = -139.620046 kcal Electronic energy + Delta-G solvation = -29558.297128 eV Core-core repulsion = 25197.298569 eV Total energy + Delta-G solvation = -4360.998559 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -48.70548 -41.92504 -40.60489 -38.98283 -38.05410 -37.42661 -35.80173 -34.27761 -33.90699 -32.39166 -30.97484 -30.18185 -27.44488 -27.10115 -26.65448 -23.60854 -23.51778 -23.28767 -21.62772 -20.76437 -19.89472 -19.62602 -18.82821 -18.40574 -17.64536 -17.12507 -16.86565 -16.77067 -16.56450 -16.27728 -16.14202 -15.85723 -15.64794 -15.52966 -15.22661 -14.92443 -14.71113 -14.61421 -14.33506 -14.09257 -13.84155 -13.56852 -13.43777 -13.26707 -13.12465 -12.78934 -12.69256 -12.45354 -12.37098 -12.10222 -12.09653 -11.75100 -11.54897 -11.45210 -11.30289 -11.13506 -11.02919 -10.72955 -9.82758 -9.33564 -8.86622 -8.45048 -6.14161 0.41791 0.68645 1.36628 1.37531 1.46916 1.54818 1.95805 2.19274 2.68228 2.84337 3.01671 3.17276 3.43158 3.48334 3.50751 3.60654 3.85128 3.98559 4.05601 4.10051 4.30123 4.36440 4.42441 4.43319 4.48066 4.52568 4.58074 4.65921 4.68400 4.71776 4.88381 4.96625 5.00915 5.04191 5.12203 5.26710 5.31716 5.42326 5.46215 5.65661 5.66433 5.79164 6.02554 6.17310 6.72030 6.86274 6.98913 7.33694 7.77955 8.77957 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017465 B = 0.002697 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.839110 B =10377.896065 C =11569.123722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.023 4.023 3 Si 1.020 2.980 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.248 1.248 7 C -0.414 4.414 8 H 0.104 0.896 9 O -0.225 6.225 10 C 0.138 3.862 11 C -0.213 4.213 12 C -0.050 4.050 13 C -0.201 4.201 14 C 0.204 3.796 15 N -0.674 5.674 16 C 0.703 3.297 17 O -0.610 6.610 18 N -0.621 5.621 19 C 0.096 3.904 20 C -0.133 4.133 21 C -0.132 4.132 22 C 0.098 3.902 23 F -0.224 7.224 24 C 0.058 3.942 25 O -0.594 6.594 26 C 0.113 3.887 27 C -0.258 4.258 28 H 0.273 0.727 29 H 0.122 0.878 30 H 0.153 0.847 31 H 0.120 0.880 32 H 0.416 0.584 33 H 0.083 0.917 34 H 0.106 0.894 35 H 0.117 0.883 36 H 0.050 0.950 37 H 0.118 0.882 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.076 0.924 41 H 0.402 0.598 42 H 0.111 0.889 43 H 0.073 0.927 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.698 -10.524 1.430 31.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.171 1.171 7 C -0.490 4.490 8 H 0.121 0.879 9 O -0.131 6.131 10 C 0.086 3.914 11 C -0.233 4.233 12 C -0.069 4.069 13 C -0.222 4.222 14 C 0.109 3.891 15 N -0.324 5.324 16 C 0.405 3.595 17 O -0.489 6.489 18 N -0.358 5.358 19 C -0.026 4.026 20 C -0.171 4.171 21 C -0.169 4.169 22 C 0.079 3.921 23 F -0.205 7.205 24 C -0.020 4.020 25 O -0.403 6.403 26 C -0.011 4.011 27 C -0.280 4.280 28 H 0.082 0.918 29 H 0.140 0.860 30 H 0.170 0.830 31 H 0.138 0.862 32 H 0.257 0.743 33 H 0.101 0.899 34 H 0.124 0.876 35 H 0.136 0.864 36 H 0.069 0.931 37 H 0.137 0.863 38 H 0.114 0.886 39 H 0.117 0.883 40 H 0.094 0.906 41 H 0.253 0.747 42 H 0.129 0.871 43 H 0.091 0.909 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 28.470 -10.627 1.220 30.414 hybrid contribution 0.183 0.512 0.063 0.547 sum 28.653 -10.116 1.282 30.414 Atomic orbital electron populations 1.70191 1.08113 1.28836 1.48685 1.26619 0.96845 1.02787 0.95767 0.84580 0.77989 0.74411 0.79170 1.19008 1.19755 1.17115 1.21829 0.92577 0.81298 1.53322 0.87896 1.83984 1.35518 1.12436 1.81131 1.19540 0.90565 0.88049 0.93204 1.20462 1.00264 0.90226 1.12299 1.20878 0.92758 0.97591 0.95648 1.20798 0.94785 0.96459 1.10182 1.17197 0.81621 0.93392 0.96860 1.42623 1.04096 1.25703 1.59998 1.15963 0.82380 0.81908 0.79270 1.90912 1.70420 1.39399 1.48173 1.47273 1.02668 1.22916 1.62905 1.22119 0.96337 0.87335 0.96812 1.21903 0.97994 0.99956 0.97252 1.22110 0.97626 0.93620 1.03552 1.21826 0.90739 0.94517 0.85052 1.92836 1.78381 1.87945 1.61359 1.22817 0.92065 0.87225 0.99883 1.86538 1.38832 1.32896 1.82082 1.22066 0.94260 0.88747 0.95995 1.20770 0.93204 0.98240 1.15817 0.91833 0.86021 0.82973 0.86227 0.74318 0.89883 0.87638 0.86440 0.93097 0.86330 0.88592 0.88290 0.90621 0.74692 0.87148 0.90881 0.85064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.34 13.67 21.61 0.30 -56.04 16 2 C -0.02 -1.27 5.49 84.83 0.47 -0.81 16 3 Si 1.02 41.90 29.55 68.60 2.03 43.93 16 4 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 5 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 6 H -0.25 -9.21 7.11 99.48 0.71 -8.50 16 7 C -0.41 -23.89 9.49 67.92 0.64 -23.25 16 8 H 0.10 5.37 5.20 -2.91 -0.02 5.36 16 9 O -0.22 -13.58 9.76 -22.80 -0.22 -13.80 16 10 C 0.14 7.09 6.65 22.56 0.15 7.24 16 11 C -0.21 -9.66 9.99 22.41 0.22 -9.43 16 12 C -0.05 -1.98 10.03 22.23 0.22 -1.75 16 13 C -0.20 -8.25 8.65 22.42 0.19 -8.05 16 14 C 0.20 8.30 6.25 38.13 0.24 8.54 16 15 N -0.67 -21.93 5.25 -317.23 -1.67 -23.60 16 16 C 0.70 23.51 8.02 179.05 1.44 24.94 16 17 O -0.61 -25.75 13.57 -3.99 -0.05 -25.81 16 18 N -0.62 -14.43 2.96 -836.81 -2.48 -16.91 16 19 C 0.10 1.30 6.43 86.37 0.55 1.85 16 20 C -0.13 -1.37 5.97 30.67 0.18 -1.18 16 21 C -0.13 -1.03 4.97 30.62 0.15 -0.88 16 22 C 0.10 1.56 1.03 -10.72 -0.01 1.55 16 23 F -0.22 -5.88 16.14 44.97 0.73 -5.15 16 24 C 0.06 0.59 6.24 71.98 0.45 1.04 16 25 O -0.59 -9.27 13.05 -148.98 -1.94 -11.21 16 26 C 0.11 2.32 5.21 86.36 0.45 2.77 16 27 C -0.26 -11.72 9.08 22.51 0.20 -11.51 16 28 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16 29 H 0.12 5.32 8.06 -2.91 -0.02 5.30 16 30 H 0.15 4.81 8.06 -2.91 -0.02 4.78 16 31 H 0.12 4.96 6.52 -2.91 -0.02 4.94 16 32 H 0.42 10.55 6.28 -92.71 -0.58 9.97 16 33 H 0.08 1.11 5.57 -2.39 -0.01 1.10 16 34 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.05 0.82 7.73 -2.39 -0.02 0.80 16 37 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 38 H 0.10 0.52 8.14 -2.39 -0.02 0.51 16 39 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.40 2.08 9.12 -74.06 -0.68 1.40 16 42 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.07 2.15 6.77 -2.39 -0.02 2.13 16 44 H 0.13 5.76 5.63 -2.91 -0.02 5.74 16 Total: -1.00 -87.53 363.02 2.05 -85.47 By element: Atomic # 1 Polarization: 32.24 SS G_CDS: -0.19 Total: 32.05 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: 5.56 Total: -8.93 kcal Atomic # 7 Polarization: -92.70 SS G_CDS: -3.85 Total: -96.55 kcal Atomic # 8 Polarization: -48.60 SS G_CDS: -2.22 Total: -50.82 kcal Atomic # 9 Polarization: -5.88 SS G_CDS: 0.73 Total: -5.15 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -87.53 2.05 -85.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287132175.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.148 kcal (2) G-P(sol) polarization free energy of solvation -87.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds