Wall clock time and date at job start Tue Mar 31 2020 20:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86804 * 119.99783 * 2 1 4 4 H 1.48503 * 109.47060 * 239.99604 * 3 2 1 5 5 H 1.48501 * 109.47190 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46958 * 119.99894 * 3 2 1 7 7 C 1.38809 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99642 * 163.08863 * 7 2 1 9 9 N 1.36937 * 119.99711 * 343.08633 * 7 2 1 10 10 C 1.46918 * 120.63367 * 331.83029 * 9 7 2 11 11 C 1.53189 * 108.77771 * 233.58554 * 10 9 7 12 12 C 1.53047 * 109.31259 * 305.36788 * 11 10 9 13 13 C 1.53040 * 109.53952 * 61.36424 * 12 11 10 14 14 H 1.08993 * 109.49753 * 58.61488 * 13 12 11 15 15 C 1.52997 * 109.49747 * 178.68483 * 13 12 11 16 16 N 1.46504 * 109.46949 * 184.99910 * 15 13 12 17 17 C 1.34779 * 119.99694 * 180.02562 * 16 15 13 18 18 O 1.21597 * 120.00132 * 359.97438 * 17 16 15 19 19 C 1.47403 * 119.99818 * 180.02562 * 17 16 15 20 20 C 1.40020 * 120.18693 * 89.71526 * 19 17 16 21 21 F 1.35089 * 120.03732 * 0.02562 * 20 19 17 22 22 C 1.38059 * 119.92629 * 179.76777 * 20 19 17 23 23 C 1.38459 * 120.31651 * 0.49163 * 22 20 19 24 24 C 1.38478 * 120.37349 * 359.78751 * 23 22 20 25 25 O 1.36048 * 119.96586 * 179.97438 * 24 23 22 26 26 C 1.39056 * 120.06532 * 359.95265 * 24 23 22 27 27 O 1.35745 * 120.15880 * 180.02562 * 26 24 23 28 28 C 1.46929 * 120.62559 * 151.80707 * 9 7 2 29 29 H 0.97006 * 119.99977 * 0.02562 * 1 2 3 30 30 H 1.09010 * 109.58652 * 113.80200 * 10 9 7 31 31 H 1.08998 * 109.59056 * 353.37535 * 10 9 7 32 32 H 1.09000 * 109.50287 * 185.41356 * 11 10 9 33 33 H 1.09003 * 109.52256 * 65.33170 * 11 10 9 34 34 H 1.08999 * 109.45449 * 301.34188 * 12 11 10 35 35 H 1.08998 * 109.44748 * 181.37561 * 12 11 10 36 36 H 1.09004 * 109.47182 * 64.99974 * 15 13 12 37 37 H 1.08994 * 109.46866 * 304.99628 * 15 13 12 38 38 H 0.96994 * 120.00034 * 359.97438 * 16 15 13 39 39 H 1.07997 * 119.84673 * 180.27769 * 22 20 19 40 40 H 1.07991 * 119.81218 * 179.76711 * 23 22 20 41 41 H 0.96697 * 114.00126 * 269.97820 * 25 24 23 42 42 H 0.96696 * 114.00682 * 269.98123 * 27 26 24 43 43 H 1.08998 * 109.58783 * 6.63160 * 28 9 7 44 44 H 1.09000 * 109.58551 * 246.20061 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2715 9 7 1.3700 -2.3622 0.3461 10 6 0.2261 -2.3400 1.2678 11 6 0.4974 -3.3193 2.4141 12 6 0.8119 -4.7009 1.8357 13 6 2.0673 -4.6175 0.9645 14 1 2.9023 -4.2543 1.5635 15 6 2.3996 -6.0055 0.4133 16 7 3.6657 -5.9488 -0.3216 17 6 4.1601 -7.0618 -0.8990 18 8 3.5554 -8.1130 -0.8097 19 6 5.4342 -7.0049 -1.6379 20 6 6.6449 -7.2325 -0.9723 21 9 6.6482 -7.5057 0.3507 22 6 7.8348 -7.1826 -1.6706 23 6 7.8386 -6.8984 -3.0257 24 6 6.6492 -6.6655 -3.6956 25 8 6.6625 -6.3864 -5.0270 26 6 5.4412 -6.7171 -3.0088 27 8 4.2741 -6.4896 -3.6636 28 6 1.8137 -3.6528 -0.1983 29 1 -0.4850 0.8401 -0.0004 30 1 -0.6771 -2.6405 0.7365 31 1 0.0993 -1.3343 1.6686 32 1 -0.3832 -3.3843 3.0532 33 1 1.3469 -2.9682 2.9998 34 1 -0.0284 -5.0409 1.2303 35 1 0.9812 -5.4053 2.6501 36 1 1.6042 -6.3299 -0.2578 37 1 2.4897 -6.7119 1.2384 38 1 4.1478 -5.1102 -0.3931 39 1 8.7675 -7.3628 -1.1568 40 1 8.7743 -6.8577 -3.5631 41 1 6.7327 -5.4437 -5.2306 42 1 4.0020 -5.5617 -3.6719 43 1 2.7345 -3.5133 -0.7647 44 1 1.0400 -4.0602 -0.8491 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296028341.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:38 Heat of formation + Delta-G solvation = -122.887888 kcal Electronic energy + Delta-G solvation = -29615.206111 eV Core-core repulsion = 25254.933113 eV Total energy + Delta-G solvation = -4360.272998 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -49.30643 -40.81580 -39.40027 -37.86083 -37.27974 -36.63825 -34.88797 -33.08290 -31.46106 -30.50291 -30.13297 -29.38990 -25.95026 -25.33424 -24.00766 -23.06223 -22.17599 -21.15867 -20.78306 -19.44523 -19.02629 -18.64926 -17.65611 -17.47767 -16.83597 -16.65998 -16.23321 -15.70781 -15.51851 -15.12110 -14.92838 -14.81856 -14.41914 -14.15333 -13.96454 -13.70923 -13.52865 -13.47189 -12.84856 -12.56331 -12.42160 -12.25721 -12.21737 -12.07947 -11.91473 -11.35772 -11.07493 -10.95741 -10.76685 -10.57277 -10.31056 -10.23677 -10.11856 -9.96000 -9.62912 -9.48619 -9.41998 -9.04929 -8.93025 -8.52624 -6.73828 -5.85458 -3.29085 0.38206 0.50890 2.40677 2.73159 3.06691 3.31408 3.38253 3.38758 3.38857 3.69153 3.92142 4.30319 4.41430 4.46163 4.66925 5.01175 5.09117 5.24036 5.25503 5.37146 5.40101 5.40937 5.51805 5.56542 5.65128 5.78339 5.89234 5.94573 6.09180 6.17679 6.26131 6.32150 6.38537 6.52708 6.64879 6.70804 6.81070 6.89666 6.97193 7.32618 7.34742 7.41332 7.61617 7.71203 8.08116 8.37850 9.13917 9.77434 10.34525 11.22657 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011635 B = 0.003198 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.994036 B = 8753.193577 C = 9993.784872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.005 3.995 3 Si 0.902 3.098 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.257 4.257 8 H 0.063 0.937 9 N -0.591 5.591 10 C 0.169 3.831 11 C -0.142 4.142 12 C -0.100 4.100 13 C -0.118 4.118 14 H 0.074 0.926 15 C 0.126 3.874 16 N -0.712 5.712 17 C 0.569 3.431 18 O -0.523 6.523 19 C -0.174 4.174 20 C 0.141 3.859 21 F -0.124 7.124 22 C -0.148 4.148 23 C -0.087 4.087 24 C 0.071 3.929 25 O -0.481 6.481 26 C 0.150 3.850 27 O -0.474 6.474 28 C 0.155 3.845 29 H 0.255 0.745 30 H 0.018 0.982 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.048 0.952 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.403 0.597 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.392 0.608 42 H 0.399 0.601 43 H 0.048 0.952 44 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.357 -10.887 -3.537 18.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.194 4.194 3 Si 0.731 3.269 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.386 4.386 8 H 0.081 0.919 9 N -0.313 5.313 10 C 0.044 3.956 11 C -0.181 4.181 12 C -0.138 4.138 13 C -0.139 4.139 14 H 0.092 0.908 15 C 0.003 3.997 16 N -0.363 5.363 17 C 0.352 3.648 18 O -0.398 6.398 19 C -0.178 4.178 20 C 0.121 3.879 21 F -0.102 7.102 22 C -0.167 4.167 23 C -0.105 4.105 24 C 0.025 3.975 25 O -0.291 6.291 26 C 0.103 3.897 27 O -0.285 6.285 28 C 0.028 3.972 29 H 0.065 0.935 30 H 0.036 0.964 31 H 0.104 0.896 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.238 0.762 39 H 0.168 0.832 40 H 0.166 0.834 41 H 0.248 0.752 42 H 0.258 0.742 43 H 0.066 0.934 44 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 13.709 -12.682 -3.589 19.017 hybrid contribution 0.633 2.225 0.274 2.330 sum 14.342 -10.457 -3.314 18.056 Atomic orbital electron populations 1.70027 1.05284 1.25696 1.53416 1.25043 0.95256 0.98392 1.00720 0.86392 0.78947 0.83433 0.78083 1.20920 1.21578 1.21018 1.19086 0.92393 0.84858 1.42308 0.91893 1.44018 1.35931 1.01276 1.50118 1.20799 0.88533 0.98293 0.88023 1.22174 1.00147 0.95934 0.99843 1.21341 0.96650 0.97805 0.97984 1.21968 0.98983 0.93428 0.99488 0.90809 1.21552 0.84328 0.98304 0.95559 1.46062 1.24880 1.11232 1.54113 1.17667 0.83949 0.84404 0.78755 1.90827 1.59544 1.29777 1.59688 1.20269 0.93912 1.09288 0.94380 1.17410 0.92631 0.99679 0.78191 1.91569 1.97208 1.90662 1.30781 1.20988 0.97299 1.03888 0.94489 1.21295 0.98224 0.97745 0.93283 1.18593 0.90986 1.03421 0.84485 1.84963 1.95851 1.30412 1.17905 1.18435 0.86142 0.97672 0.87444 1.84871 1.36106 1.32462 1.75088 1.20887 0.97333 0.86890 0.92080 0.93503 0.96399 0.89577 0.93129 0.92752 0.92398 0.93368 0.91192 0.91691 0.76158 0.83246 0.83370 0.75207 0.74239 0.93366 0.96261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.33 11.20 55.49 0.62 -24.71 16 2 C 0.00 0.13 4.92 -17.43 -0.09 0.05 16 3 Si 0.90 20.79 29.59 -169.99 -5.03 15.76 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.26 -6.67 9.58 -15.06 -0.14 -6.81 16 8 H 0.06 1.58 7.88 -52.49 -0.41 1.16 16 9 N -0.59 -13.97 2.99 -172.32 -0.52 -14.48 16 10 C 0.17 3.89 5.30 -3.72 -0.02 3.87 16 11 C -0.14 -2.60 6.08 -26.61 -0.16 -2.76 16 12 C -0.10 -1.60 5.17 -26.69 -0.14 -1.73 16 13 C -0.12 -1.87 2.37 -90.50 -0.21 -2.08 16 14 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 15 C 0.13 1.82 5.07 -4.04 -0.02 1.80 16 16 N -0.71 -9.54 5.33 -61.39 -0.33 -9.87 16 17 C 0.57 8.57 6.42 -12.53 -0.08 8.49 16 18 O -0.52 -9.96 17.11 5.28 0.09 -9.87 16 19 C -0.17 -2.17 5.64 -104.81 -0.59 -2.76 16 20 C 0.14 1.56 7.28 -38.98 -0.28 1.28 16 21 F -0.12 -1.54 16.83 2.25 0.04 -1.50 16 22 C -0.15 -1.16 10.00 -39.57 -0.40 -1.56 16 23 C -0.09 -0.62 9.96 -39.41 -0.39 -1.01 16 24 C 0.07 0.64 6.71 -39.19 -0.26 0.38 16 25 O -0.48 -3.87 13.29 -34.52 -0.46 -4.33 16 26 C 0.15 1.67 6.73 -38.59 -0.26 1.41 16 27 O -0.47 -5.41 12.73 -33.57 -0.43 -5.83 16 28 C 0.15 2.95 5.60 -3.71 -0.02 2.93 16 29 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.02 0.44 8.14 -51.92 -0.42 0.01 16 31 H 0.09 2.23 6.06 -51.93 -0.31 1.92 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.40 4.74 7.69 -40.82 -0.31 4.43 16 39 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.15 0.66 8.06 -52.49 -0.42 0.23 16 41 H 0.39 1.20 9.06 45.56 0.41 1.61 16 42 H 0.40 2.82 9.06 45.56 0.41 3.23 16 43 H 0.05 0.86 7.14 -51.93 -0.37 0.48 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 371.83 15.07 5.60 5.60 Total: -1.00 -34.62 371.83 -7.85 -42.47 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -4.37 Total: 5.28 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -3.07 Total: 1.47 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: -0.22 Total: -49.06 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.80 Total: -20.03 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.62 -7.85 -42.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296028341.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.416 kcal (2) G-P(sol) polarization free energy of solvation -34.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds