Wall clock time and date at job start Tue Mar 31 2020 20:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86804 * 119.99783 * 2 1 4 4 H 1.48503 * 109.47060 * 239.99604 * 3 2 1 5 5 H 1.48501 * 109.47190 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46958 * 119.99894 * 3 2 1 7 7 C 1.38809 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99642 * 163.08863 * 7 2 1 9 9 N 1.36937 * 119.99711 * 343.08633 * 7 2 1 10 10 C 1.46918 * 120.63367 * 331.83029 * 9 7 2 11 11 C 1.53189 * 108.77771 * 233.58554 * 10 9 7 12 12 C 1.53047 * 109.31259 * 305.36788 * 11 10 9 13 13 C 1.53040 * 109.53952 * 61.36424 * 12 11 10 14 14 H 1.08993 * 109.49753 * 58.61488 * 13 12 11 15 15 C 1.52997 * 109.49747 * 178.68483 * 13 12 11 16 16 N 1.46504 * 109.46949 * 184.99910 * 15 13 12 17 17 C 1.34779 * 119.99694 * 180.02562 * 16 15 13 18 18 O 1.21597 * 120.00132 * 359.97438 * 17 16 15 19 19 C 1.47403 * 119.99818 * 180.02562 * 17 16 15 20 20 C 1.40020 * 120.18693 * 89.71526 * 19 17 16 21 21 F 1.35089 * 120.03732 * 0.02562 * 20 19 17 22 22 C 1.38059 * 119.92629 * 179.76777 * 20 19 17 23 23 C 1.38459 * 120.31651 * 0.49163 * 22 20 19 24 24 C 1.38478 * 120.37349 * 359.78751 * 23 22 20 25 25 O 1.36048 * 119.96586 * 179.97438 * 24 23 22 26 26 C 1.39056 * 120.06532 * 359.95265 * 24 23 22 27 27 O 1.35745 * 120.15880 * 180.02562 * 26 24 23 28 28 C 1.46929 * 120.62559 * 151.80707 * 9 7 2 29 29 H 0.97006 * 119.99977 * 0.02562 * 1 2 3 30 30 H 1.09010 * 109.58652 * 113.80200 * 10 9 7 31 31 H 1.08998 * 109.59056 * 353.37535 * 10 9 7 32 32 H 1.09000 * 109.50287 * 185.41356 * 11 10 9 33 33 H 1.09003 * 109.52256 * 65.33170 * 11 10 9 34 34 H 1.08999 * 109.45449 * 301.34188 * 12 11 10 35 35 H 1.08998 * 109.44748 * 181.37561 * 12 11 10 36 36 H 1.09004 * 109.47182 * 64.99974 * 15 13 12 37 37 H 1.08994 * 109.46866 * 304.99628 * 15 13 12 38 38 H 0.96994 * 120.00034 * 359.97438 * 16 15 13 39 39 H 1.07997 * 119.84673 * 180.27769 * 22 20 19 40 40 H 1.07991 * 119.81218 * 179.76711 * 23 22 20 41 41 H 0.96697 * 114.00126 * 269.97820 * 25 24 23 42 42 H 0.96696 * 114.00682 * 269.98123 * 27 26 24 43 43 H 1.08998 * 109.58783 * 6.63160 * 28 9 7 44 44 H 1.09000 * 109.58551 * 246.20061 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2715 9 7 1.3700 -2.3622 0.3461 10 6 0.2261 -2.3400 1.2678 11 6 0.4974 -3.3193 2.4141 12 6 0.8119 -4.7009 1.8357 13 6 2.0673 -4.6175 0.9645 14 1 2.9023 -4.2543 1.5635 15 6 2.3996 -6.0055 0.4133 16 7 3.6657 -5.9488 -0.3216 17 6 4.1601 -7.0618 -0.8990 18 8 3.5554 -8.1130 -0.8097 19 6 5.4342 -7.0049 -1.6379 20 6 6.6449 -7.2325 -0.9723 21 9 6.6482 -7.5057 0.3507 22 6 7.8348 -7.1826 -1.6706 23 6 7.8386 -6.8984 -3.0257 24 6 6.6492 -6.6655 -3.6956 25 8 6.6625 -6.3864 -5.0270 26 6 5.4412 -6.7171 -3.0088 27 8 4.2741 -6.4896 -3.6636 28 6 1.8137 -3.6528 -0.1983 29 1 -0.4850 0.8401 -0.0004 30 1 -0.6771 -2.6405 0.7365 31 1 0.0993 -1.3343 1.6686 32 1 -0.3832 -3.3843 3.0532 33 1 1.3469 -2.9682 2.9998 34 1 -0.0284 -5.0409 1.2303 35 1 0.9812 -5.4053 2.6501 36 1 1.6042 -6.3299 -0.2578 37 1 2.4897 -6.7119 1.2384 38 1 4.1478 -5.1102 -0.3931 39 1 8.7675 -7.3628 -1.1568 40 1 8.7743 -6.8577 -3.5631 41 1 6.7327 -5.4437 -5.2306 42 1 4.0020 -5.5617 -3.6719 43 1 2.7345 -3.5133 -0.7647 44 1 1.0400 -4.0602 -0.8491 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296028341.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:37 Heat of formation + Delta-G solvation = -149.509044 kcal Electronic energy + Delta-G solvation = -29616.360491 eV Core-core repulsion = 25254.933113 eV Total energy + Delta-G solvation = -4361.427378 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -50.14932 -41.67372 -40.46001 -39.33773 -38.04754 -37.33797 -36.34049 -34.72050 -32.54283 -32.28930 -31.39133 -30.08921 -27.34126 -27.06220 -24.98244 -23.83061 -23.77770 -22.59104 -21.90244 -20.77378 -20.01804 -19.44688 -18.69125 -18.44438 -18.25453 -17.69576 -17.18903 -16.83214 -16.70299 -16.37678 -16.22203 -15.76853 -15.61240 -15.30337 -15.11809 -15.02545 -14.96933 -14.52527 -14.24017 -14.03607 -13.78272 -13.62073 -13.26404 -13.02603 -12.86636 -12.77967 -12.65927 -12.49301 -12.31349 -11.98756 -11.84465 -11.81483 -11.59013 -11.37333 -11.12999 -11.01370 -10.51891 -10.24947 -10.17064 -9.63467 -8.67187 -7.85748 -5.31994 -0.34884 -0.17404 1.27920 1.47861 1.51180 1.57202 1.93188 2.16051 2.51936 2.64578 3.07058 3.21612 3.29436 3.45922 3.58389 3.76522 3.96174 3.97395 4.00235 4.04090 4.37551 4.39800 4.53884 4.57299 4.62306 4.72031 4.73873 4.84636 4.87359 4.91779 4.98889 5.02605 5.09421 5.16624 5.28713 5.33369 5.41814 5.46976 5.56765 5.66900 5.78123 6.29207 6.39930 6.44003 6.81465 6.95868 7.15625 7.86858 8.39479 9.20463 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011635 B = 0.003198 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.994036 B = 8753.193577 C = 9993.784872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.050 4.050 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.298 1.298 6 H -0.279 1.279 7 C -0.262 4.262 8 H 0.072 0.928 9 N -0.609 5.609 10 C 0.173 3.827 11 C -0.130 4.130 12 C -0.098 4.098 13 C -0.100 4.100 14 H 0.077 0.923 15 C 0.135 3.865 16 N -0.702 5.702 17 C 0.570 3.430 18 O -0.571 6.571 19 C -0.197 4.197 20 C 0.121 3.879 21 F -0.138 7.138 22 C -0.132 4.132 23 C -0.070 4.070 24 C 0.076 3.924 25 O -0.491 6.491 26 C 0.134 3.866 27 O -0.494 6.494 28 C 0.154 3.846 29 H 0.249 0.751 30 H -0.007 1.007 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.413 0.587 39 H 0.181 0.819 40 H 0.185 0.815 41 H 0.414 0.586 42 H 0.412 0.588 43 H 0.059 0.941 44 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.428 -11.354 -3.791 21.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.245 4.245 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.225 1.225 6 H -0.205 1.205 7 C -0.392 4.392 8 H 0.090 0.910 9 N -0.332 5.332 10 C 0.047 3.953 11 C -0.169 4.169 12 C -0.136 4.136 13 C -0.120 4.120 14 H 0.095 0.905 15 C 0.012 3.988 16 N -0.353 5.353 17 C 0.355 3.645 18 O -0.451 6.451 19 C -0.202 4.202 20 C 0.101 3.899 21 F -0.116 7.116 22 C -0.151 4.151 23 C -0.089 4.089 24 C 0.030 3.970 25 O -0.305 6.305 26 C 0.087 3.913 27 O -0.308 6.308 28 C 0.028 3.972 29 H 0.058 0.942 30 H 0.011 0.989 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.249 0.751 39 H 0.199 0.801 40 H 0.203 0.797 41 H 0.274 0.726 42 H 0.273 0.727 43 H 0.078 0.922 44 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges 16.814 -13.123 -3.849 21.674 hybrid contribution -0.298 2.369 0.253 2.401 sum 16.516 -10.754 -3.597 20.034 Atomic orbital electron populations 1.70195 1.06812 1.25840 1.55368 1.25798 0.95929 1.01524 1.01289 0.85378 0.77562 0.79297 0.78423 1.19774 1.22489 1.20462 1.19498 0.92927 0.85837 1.40966 0.91030 1.44287 1.35846 1.02276 1.50770 1.20625 0.87753 0.97699 0.89199 1.22001 1.00944 0.95861 0.98091 1.21341 0.96509 0.96875 0.98857 1.21725 0.99139 0.93129 0.98034 0.90478 1.21372 0.84598 0.97254 0.95616 1.45987 1.24419 1.11460 1.53418 1.18090 0.84512 0.83712 0.78150 1.90788 1.61245 1.31434 1.61605 1.20163 0.93074 1.11968 0.94966 1.17703 0.93296 1.00970 0.77889 1.91530 1.97295 1.91002 1.31785 1.21343 0.97152 1.01859 0.94703 1.21683 0.98853 0.95403 0.92920 1.18682 0.90746 1.02785 0.84771 1.84909 1.95780 1.32596 1.17197 1.18633 0.86805 0.98657 0.87157 1.84828 1.36830 1.33969 1.75147 1.21009 0.97231 0.85654 0.93270 0.94230 0.98925 0.93014 0.91298 0.92831 0.92580 0.90322 0.92072 0.91034 0.75080 0.80138 0.79733 0.72646 0.72728 0.92215 0.97446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.34 11.20 21.65 0.24 -54.09 16 2 C -0.05 -2.69 4.92 84.86 0.42 -2.28 16 3 Si 0.97 43.02 29.59 68.60 2.03 45.05 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 6 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.26 -13.64 9.58 84.03 0.81 -12.84 16 8 H 0.07 3.52 7.88 -2.91 -0.02 3.50 16 9 N -0.61 -29.02 2.99 -699.10 -2.09 -31.12 16 10 C 0.17 8.14 5.30 86.36 0.46 8.60 16 11 C -0.13 -4.65 6.08 30.67 0.19 -4.46 16 12 C -0.10 -2.97 5.17 30.62 0.16 -2.81 16 13 C -0.10 -3.04 2.37 -10.71 -0.03 -3.06 16 14 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 15 C 0.14 3.79 5.07 86.38 0.44 4.23 16 16 N -0.70 -18.48 5.33 -466.40 -2.49 -20.96 16 17 C 0.57 17.27 6.42 86.66 0.56 17.82 16 18 O -0.57 -22.27 17.11 -4.02 -0.07 -22.34 16 19 C -0.20 -4.82 5.64 -19.99 -0.11 -4.93 16 20 C 0.12 2.52 7.28 22.66 0.17 2.68 16 21 F -0.14 -3.31 16.83 44.97 0.76 -2.55 16 22 C -0.13 -1.65 10.00 22.28 0.22 -1.42 16 23 C -0.07 -0.73 9.96 22.38 0.22 -0.51 16 24 C 0.08 1.18 6.71 22.52 0.15 1.33 16 25 O -0.49 -6.56 13.29 -80.10 -1.06 -7.63 16 26 C 0.13 2.87 6.73 22.91 0.15 3.02 16 27 O -0.49 -11.20 12.73 -76.70 -0.98 -12.18 16 28 C 0.15 5.82 5.60 86.36 0.48 6.31 16 29 H 0.25 14.09 8.31 -92.70 -0.77 13.32 16 30 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 31 H 0.05 2.78 6.06 -2.39 -0.01 2.76 16 32 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.41 9.33 7.69 -92.71 -0.71 8.62 16 39 H 0.18 1.10 8.06 -2.91 -0.02 1.08 16 40 H 0.19 0.62 8.06 -2.92 -0.02 0.59 16 41 H 0.41 1.34 9.06 -74.06 -0.67 0.67 16 42 H 0.41 5.81 9.06 -74.06 -0.67 5.14 16 43 H 0.06 2.08 7.14 -2.39 -0.02 2.06 16 44 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 Total: -1.00 -77.33 371.83 -0.36 -77.69 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -0.98 Total: 16.44 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: 4.28 Total: 11.69 kcal Atomic # 7 Polarization: -101.84 SS G_CDS: -4.34 Total: -106.17 kcal Atomic # 8 Polarization: -40.03 SS G_CDS: -2.11 Total: -42.14 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.76 Total: -2.55 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -77.33 -0.36 -77.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296028341.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.820 kcal (2) G-P(sol) polarization free energy of solvation -77.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds