Wall clock time and date at job start Tue Mar 31 2020 20:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48503 * 109.47195 * 269.99383 * 3 2 1 5 5 H 1.48498 * 109.47355 * 29.99940 * 3 2 1 6 6 H 1.48504 * 109.46850 * 149.99954 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00161 * 163.08302 * 7 2 1 9 9 N 1.36942 * 120.00203 * 343.08250 * 7 2 1 10 10 C 1.46924 * 120.63278 * 151.81256 * 9 7 2 11 11 C 1.53184 * 108.77817 * 126.41448 * 10 9 7 12 12 C 1.53042 * 109.31519 * 54.63388 * 11 10 9 13 13 C 1.53075 * 109.65345 * 298.69965 * 12 11 10 14 14 H 1.08996 * 109.39782 * 301.27682 * 13 12 11 15 15 C 1.53004 * 109.61936 * 181.16636 * 13 12 11 16 16 N 1.46503 * 109.47070 * 175.10456 * 15 13 12 17 17 C 1.34777 * 119.99929 * 180.02562 * 16 15 13 18 18 O 1.21603 * 119.99929 * 0.02562 * 17 16 15 19 19 C 1.47404 * 120.00116 * 180.02562 * 17 16 15 20 20 C 1.40021 * 120.18734 * 89.72161 * 19 17 16 21 21 F 1.35107 * 120.03424 * 0.02562 * 20 19 17 22 22 C 1.38059 * 119.93109 * 179.75081 * 20 19 17 23 23 C 1.38454 * 120.30970 * 0.55134 * 22 20 19 24 24 C 1.38476 * 120.37984 * 359.69874 * 23 22 20 25 25 O 1.36047 * 119.96456 * 179.97438 * 24 23 22 26 26 C 1.39056 * 120.06226 * 0.02562 * 24 23 22 27 27 O 1.35751 * 120.15590 * 179.97438 * 26 24 23 28 28 C 1.46922 * 120.62796 * 331.83144 * 9 7 2 29 29 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.58325 * 246.20224 * 10 9 7 31 31 H 1.08996 * 109.58499 * 6.48109 * 10 9 7 32 32 H 1.09003 * 109.49977 * 174.58765 * 11 10 9 33 33 H 1.09001 * 109.49855 * 294.68137 * 11 10 9 34 34 H 1.08990 * 109.45833 * 58.65380 * 12 11 10 35 35 H 1.08998 * 109.46145 * 178.63454 * 12 11 10 36 36 H 1.08995 * 109.47635 * 295.10914 * 15 13 12 37 37 H 1.09004 * 109.46987 * 55.11104 * 15 13 12 38 38 H 0.96995 * 120.00017 * 0.02562 * 16 15 13 39 39 H 1.07997 * 119.84345 * 180.27565 * 22 20 19 40 40 H 1.08006 * 119.80820 * 179.72364 * 23 22 20 41 41 H 0.96700 * 114.00116 * 270.02423 * 25 24 23 42 42 H 0.96695 * 114.00189 * 270.02414 * 27 26 24 43 43 H 1.09003 * 109.58836 * 353.37398 * 28 9 7 44 44 H 1.08998 * 109.58900 * 113.65916 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2716 9 7 1.3701 -2.3623 0.3462 10 6 1.8138 -3.6528 -0.1981 11 6 2.0674 -4.6173 0.9647 12 6 0.8120 -4.7009 1.8361 13 6 0.4941 -3.3198 2.4146 14 1 1.3428 -2.9692 3.0019 15 6 -0.7441 -3.4101 3.3089 16 7 -0.9769 -2.1148 3.9527 17 6 -2.0201 -1.9571 4.7915 18 8 -2.7676 -2.8900 5.0142 19 6 -2.2547 -0.6538 5.4389 20 6 -3.0592 0.3075 4.8150 21 9 -3.6238 0.0423 3.6165 22 6 -3.2797 1.5245 5.4285 23 6 -2.6994 1.8046 6.6540 24 6 -1.8973 0.8653 7.2800 25 8 -1.3309 1.1495 8.4839 26 6 -1.6694 -0.3677 6.6788 27 8 -0.8830 -1.2898 7.2906 28 6 0.2263 -2.3400 1.2679 29 1 -0.4850 0.8400 -0.0004 30 1 1.0401 -4.0604 -0.8488 31 1 2.7331 -3.5130 -0.7667 32 1 2.3042 -5.6063 0.5721 33 1 2.9024 -4.2537 1.5636 34 1 -0.0281 -5.0409 1.2308 35 1 0.9815 -5.4051 2.6505 36 1 -1.6108 -3.6761 2.7038 37 1 -0.5862 -4.1720 4.0722 38 1 -0.3804 -1.3709 3.7754 39 1 -3.9041 2.2633 4.9481 40 1 -2.8737 2.7610 7.1245 41 1 -0.4589 1.5628 8.4205 42 1 0.0531 -1.2254 7.0571 43 1 0.0994 -1.3343 1.6687 44 1 -0.6774 -2.6381 0.7363 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296028348.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:43 Heat of formation + Delta-G solvation = -122.747708 kcal Electronic energy + Delta-G solvation = -30127.785070 eV Core-core repulsion = 25767.518150 eV Total energy + Delta-G solvation = -4360.266920 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.03407 -40.67978 -39.23834 -37.79515 -37.20535 -36.51245 -34.69856 -33.11916 -31.51513 -30.51174 -29.79811 -29.24610 -25.90905 -25.32453 -23.89674 -22.92286 -22.19869 -21.03033 -20.61864 -19.35254 -18.95890 -18.50388 -17.49514 -17.31273 -16.80889 -16.58598 -16.06141 -15.51605 -15.36597 -15.17805 -14.78852 -14.53559 -14.21671 -14.08559 -13.84951 -13.65197 -13.54572 -13.25898 -12.94094 -12.41547 -12.37351 -12.24887 -12.15146 -11.92822 -11.78741 -11.29424 -11.07452 -10.86652 -10.77292 -10.54872 -10.29762 -10.24229 -10.01802 -9.90926 -9.61250 -9.48772 -9.27372 -8.84571 -8.77255 -8.54801 -6.72636 -5.85590 -3.28542 0.54090 0.65781 2.58818 2.88027 3.25834 3.28872 3.36995 3.38431 3.51376 3.79982 4.09275 4.41656 4.46160 4.65118 4.82376 5.10274 5.20542 5.27585 5.38721 5.49816 5.52498 5.55185 5.57771 5.68131 5.75548 5.78053 5.92523 6.05320 6.23763 6.25465 6.26154 6.35155 6.45428 6.60501 6.62303 6.76844 6.80838 6.97075 7.02653 7.24435 7.39643 7.55013 7.62635 7.72321 8.27111 8.37443 9.14086 9.77435 10.35251 11.22218 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010383 B = 0.004071 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2696.049406 B = 6875.894803 C = 8222.110604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.003 3.997 3 Si 0.898 3.102 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.253 4.253 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.143 3.857 11 C -0.132 4.132 12 C -0.100 4.100 13 C -0.127 4.127 14 H 0.069 0.931 15 C 0.130 3.870 16 N -0.707 5.707 17 C 0.569 3.431 18 O -0.527 6.527 19 C -0.172 4.172 20 C 0.148 3.852 21 F -0.118 7.118 22 C -0.147 4.147 23 C -0.087 4.087 24 C 0.067 3.933 25 O -0.482 6.482 26 C 0.146 3.854 27 O -0.475 6.475 28 C 0.179 3.821 29 H 0.254 0.746 30 H 0.017 0.983 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.048 0.952 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.406 0.594 39 H 0.151 0.849 40 H 0.148 0.852 41 H 0.389 0.611 42 H 0.395 0.605 43 H 0.086 0.914 44 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.980 2.127 13.058 13.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.196 4.196 3 Si 0.727 3.273 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.383 4.383 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.016 3.984 11 C -0.171 4.171 12 C -0.138 4.138 13 C -0.148 4.148 14 H 0.088 0.912 15 C 0.006 3.994 16 N -0.358 5.358 17 C 0.353 3.647 18 O -0.404 6.404 19 C -0.177 4.177 20 C 0.128 3.872 21 F -0.096 7.096 22 C -0.166 4.166 23 C -0.105 4.105 24 C 0.021 3.979 25 O -0.292 6.292 26 C 0.099 3.901 27 O -0.285 6.285 28 C 0.052 3.948 29 H 0.064 0.936 30 H 0.035 0.965 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.241 0.759 39 H 0.168 0.832 40 H 0.165 0.835 41 H 0.245 0.755 42 H 0.252 0.748 43 H 0.105 0.895 44 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -2.659 1.137 13.610 13.914 hybrid contribution 1.441 1.556 -0.738 2.246 sum -1.219 2.693 12.872 13.207 Atomic orbital electron populations 1.70038 1.05107 1.25498 1.53758 1.25043 0.95254 0.98291 1.01002 0.86372 0.79139 0.83817 0.77927 1.21316 1.21564 1.20527 1.19177 0.92566 0.84772 1.41760 0.91729 1.44028 1.35936 1.01667 1.49830 1.20936 0.97557 0.86937 0.92933 1.21980 0.97313 0.98977 0.98874 1.21335 0.98378 0.95626 0.98492 1.22146 0.95700 0.98478 0.98461 0.91229 1.21470 0.98954 0.83646 0.95325 1.46025 1.29144 1.15382 1.45209 1.17640 0.81376 0.86634 0.79065 1.90808 1.46205 1.40902 1.62440 1.20275 1.04437 0.96356 0.96645 1.17461 0.94466 0.93206 0.82050 1.91622 1.82164 1.94074 1.41707 1.21024 1.03120 0.96222 0.96263 1.21269 0.96094 0.99570 0.93614 1.18541 0.99901 0.91895 0.87568 1.84960 1.37196 1.82798 1.24210 1.18378 0.94497 0.88400 0.88804 1.84871 1.22380 1.53165 1.68110 1.20793 0.88877 0.97524 0.87559 0.93593 0.96494 0.92898 0.93018 0.92440 0.92427 0.93346 0.91442 0.91964 0.75893 0.83175 0.83453 0.75506 0.74782 0.89547 0.96261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.93 11.20 55.49 0.62 -24.31 16 2 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 3 Si 0.90 20.57 29.59 -169.99 -5.03 15.54 16 4 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.25 -6.64 9.58 -15.06 -0.14 -6.79 16 8 H 0.06 1.68 7.89 -52.48 -0.41 1.26 16 9 N -0.59 -14.18 3.00 -172.33 -0.52 -14.69 16 10 C 0.14 2.90 6.52 -3.72 -0.02 2.87 16 11 C -0.13 -2.19 6.08 -26.61 -0.16 -2.35 16 12 C -0.10 -1.60 5.17 -26.67 -0.14 -1.74 16 13 C -0.13 -2.21 2.38 -90.48 -0.22 -2.43 16 14 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 15 C 0.13 2.13 5.08 -4.04 -0.02 2.11 16 16 N -0.71 -11.39 5.33 -61.39 -0.33 -11.71 16 17 C 0.57 9.87 6.42 -12.53 -0.08 9.79 16 18 O -0.53 -10.99 17.11 5.27 0.09 -10.90 16 19 C -0.17 -2.55 5.64 -104.81 -0.59 -3.14 16 20 C 0.15 2.10 7.28 -38.98 -0.28 1.81 16 21 F -0.12 -1.94 16.83 2.25 0.04 -1.90 16 22 C -0.15 -1.55 10.00 -39.57 -0.40 -1.95 16 23 C -0.09 -0.79 9.96 -39.41 -0.39 -1.18 16 24 C 0.07 0.69 6.71 -39.19 -0.26 0.43 16 25 O -0.48 -4.27 13.29 -34.52 -0.46 -4.73 16 26 C 0.15 1.83 6.73 -38.59 -0.26 1.57 16 27 O -0.47 -5.62 12.73 -33.59 -0.43 -6.05 16 28 C 0.18 3.97 4.38 -3.71 -0.02 3.95 16 29 H 0.25 6.85 8.31 -40.82 -0.34 6.52 16 30 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.41 6.23 7.68 -40.82 -0.31 5.92 16 39 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 40 H 0.15 0.91 8.06 -52.48 -0.42 0.49 16 41 H 0.39 1.46 9.07 45.56 0.41 1.87 16 42 H 0.39 2.74 9.06 45.56 0.41 3.15 16 43 H 0.09 2.09 5.26 -51.93 -0.27 1.81 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 371.82 15.07 5.60 5.60 Total: -1.00 -34.53 371.82 -7.85 -42.38 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -4.37 Total: 7.82 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -3.07 Total: 2.95 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.22 Total: -50.72 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.80 Total: -21.67 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.54 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.53 -7.85 -42.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296028348.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.363 kcal (2) G-P(sol) polarization free energy of solvation -34.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds