Wall clock time and date at job start Tue Mar 31 2020 20:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86804 * 119.99710 * 2 1 4 4 H 1.48491 * 109.47163 * 275.41439 * 3 2 1 5 5 H 1.48505 * 109.47070 * 35.41239 * 3 2 1 6 6 H 1.48502 * 109.47067 * 155.40784 * 3 2 1 7 7 C 1.39929 * 120.00241 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00123 * 341.73548 * 7 2 1 9 9 C 1.41440 * 119.99760 * 161.73623 * 7 2 1 10 10 C 1.40781 * 120.17795 * 330.17339 * 9 7 2 11 11 C 1.37718 * 120.03947 * 180.02562 * 10 9 7 12 12 C 1.38375 * 120.41137 * 359.70151 * 11 10 9 13 13 C 1.39879 * 120.35370 * 0.55550 * 12 11 10 14 14 C 1.47888 * 120.02098 * 179.74451 * 13 12 11 15 15 O 1.21555 * 120.00124 * 179.72491 * 14 13 12 16 16 N 1.34774 * 120.00093 * 359.72499 * 14 13 12 17 17 C 1.46504 * 120.00118 * 180.02562 * 16 14 13 18 18 C 1.53005 * 109.47144 * 179.97438 * 17 16 14 19 19 C 1.50702 * 109.47139 * 179.97438 * 18 17 16 20 20 C 1.38379 * 119.92876 * 270.02372 * 19 18 17 21 21 C 1.38341 * 120.29356 * 180.02562 * 20 19 18 22 22 C 1.37979 * 120.13944 * 359.70101 * 21 20 19 23 23 C 1.39555 * 119.85753 * 0.52692 * 22 21 20 24 24 C 1.47841 * 120.14756 * 179.76942 * 23 22 21 25 25 N 1.34784 * 119.99939 * 359.72740 * 24 23 22 26 26 O 1.21557 * 120.00482 * 179.72484 * 24 23 22 27 27 C 1.37938 * 119.92557 * 90.00034 * 19 18 17 28 28 C 1.39030 * 119.95408 * 359.46654 * 13 12 11 29 29 H 0.97000 * 120.00300 * 0.02562 * 1 2 3 30 30 H 1.07993 * 119.98014 * 0.02562 * 10 9 7 31 31 H 1.07995 * 119.79211 * 179.97438 * 11 10 9 32 32 H 1.07999 * 119.82224 * 180.28012 * 12 11 10 33 33 H 0.97000 * 120.00109 * 0.02562 * 16 14 13 34 34 H 1.08997 * 109.47154 * 60.00175 * 17 16 14 35 35 H 1.08999 * 109.46880 * 299.99938 * 17 16 14 36 36 H 1.08997 * 109.46837 * 60.00121 * 18 17 16 37 37 H 1.08999 * 109.47148 * 300.00358 * 18 17 16 38 38 H 1.08002 * 119.85475 * 0.02562 * 20 19 18 39 39 H 1.07997 * 119.92785 * 179.97438 * 21 20 19 40 40 H 1.08002 * 120.07385 * 180.27961 * 22 21 20 41 41 H 0.96997 * 119.99754 * 359.97438 * 25 24 23 42 42 H 0.96992 * 119.99958 * 179.72856 * 25 24 23 43 43 H 1.08004 * 120.07077 * 0.02562 * 27 19 18 44 44 H 1.08002 * 120.20146 * 180.22622 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3753 2.1125 -1.3937 5 1 1.5014 2.6170 0.8113 6 1 3.5923 1.4100 0.5827 7 6 2.0080 -1.2118 0.0005 8 1 1.5089 -2.1234 0.2941 9 6 3.3689 -1.2427 -0.3833 10 6 3.8625 -0.3109 -1.3161 11 6 5.1880 -0.3439 -1.6882 12 6 6.0445 -1.2858 -1.1460 13 6 5.5709 -2.2230 -0.2219 14 6 6.4915 -3.2299 0.3487 15 8 6.0807 -4.0410 1.1554 16 7 7.7861 -3.2483 -0.0258 17 6 8.6979 -4.2462 0.5390 18 6 10.0968 -4.0494 -0.0488 19 6 11.0349 -5.0755 0.5327 20 6 11.7339 -4.7929 1.6930 21 6 12.5975 -5.7290 2.2331 22 6 12.7624 -6.9542 1.6203 23 6 12.0641 -7.2439 0.4473 24 6 12.2398 -8.5527 -0.2174 25 7 13.0800 -9.4672 0.3064 26 8 11.6265 -8.8042 -1.2364 27 6 11.1946 -6.2946 -0.0926 28 6 4.2354 -2.2035 0.1641 29 1 -0.4850 0.8400 -0.0004 30 1 3.2013 0.4303 -1.7400 31 1 5.5623 0.3726 -2.4044 32 1 7.0833 -1.3002 -1.4412 33 1 8.1140 -2.6009 -0.6693 34 1 8.3390 -5.2460 0.2947 35 1 8.7387 -4.1293 1.6220 36 1 10.4560 -3.0497 0.1952 37 1 10.0556 -4.1665 -1.1317 38 1 11.6048 -3.8371 2.1792 39 1 13.1404 -5.5020 3.1387 40 1 13.4334 -7.6860 2.0453 41 1 13.5697 -9.2664 1.1193 42 1 13.1923 -10.3274 -0.1275 43 1 10.6484 -6.5139 -0.9982 44 1 3.8663 -2.9230 0.8800 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338685122.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:30 Heat of formation + Delta-G solvation = -42.166034 kcal Electronic energy + Delta-G solvation = -26557.397753 eV Core-core repulsion = 22631.394342 eV Total energy + Delta-G solvation = -3926.003411 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.56097 -39.47889 -38.73916 -37.34325 -35.44156 -34.26037 -33.71055 -32.70382 -31.44449 -30.72353 -30.05007 -28.51035 -25.30287 -24.61633 -24.16078 -22.53066 -21.89724 -20.72280 -20.58507 -19.95435 -18.48865 -17.86962 -17.15506 -16.45756 -16.37737 -15.94200 -15.74150 -15.47562 -15.12092 -15.05237 -14.76092 -14.68170 -14.11300 -13.82361 -13.71230 -13.42315 -13.30622 -13.06225 -12.75758 -12.72270 -12.12123 -12.08142 -11.98705 -11.66176 -11.57109 -11.35782 -11.04949 -10.78515 -10.54985 -10.46911 -10.16658 -10.01831 -9.73003 -9.45828 -9.38375 -9.24307 -9.11154 -8.86014 -7.87376 -7.76438 -7.00830 -4.55628 0.42418 0.90569 1.91164 2.45752 2.51066 3.03864 3.04987 3.16983 3.25280 3.36326 3.53682 3.62117 3.92705 4.30476 4.32553 4.42594 4.48453 4.67918 4.80318 4.82983 4.90577 5.09548 5.25612 5.31702 5.40723 5.46007 5.56546 5.73171 5.83092 5.84254 5.91476 5.94951 6.01848 6.16370 6.30416 6.38425 6.45013 6.63247 6.66097 6.70421 6.85831 6.97333 7.20518 7.40066 7.49045 7.74439 7.78732 7.81205 8.00534 8.27951 8.52784 8.68140 8.72412 10.01300 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.026170 B = 0.001793 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.660353 B =15611.402935 C =15873.618320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.083 3.917 3 Si 0.911 3.089 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.244 1.244 7 C -0.442 4.442 8 H 0.094 0.906 9 C 0.082 3.918 10 C -0.221 4.221 11 C -0.083 4.083 12 C -0.217 4.217 13 C -0.108 4.108 14 C 0.563 3.437 15 O -0.547 6.547 16 N -0.736 5.736 17 C 0.126 3.874 18 C -0.094 4.094 19 C -0.084 4.084 20 C -0.084 4.084 21 C -0.125 4.125 22 C -0.090 4.090 23 C -0.140 4.140 24 C 0.563 3.437 25 N -0.852 5.852 26 O -0.537 6.537 27 C -0.051 4.051 28 C -0.136 4.136 29 H 0.286 0.714 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.401 0.599 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.125 0.875 41 H 0.400 0.600 42 H 0.405 0.595 43 H 0.138 0.862 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.662 -8.674 2.788 29.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.136 4.136 3 Si 0.738 3.262 4 H -0.196 1.196 5 H -0.217 1.217 6 H -0.167 1.167 7 C -0.470 4.470 8 H 0.112 0.888 9 C 0.078 3.922 10 C -0.241 4.241 11 C -0.101 4.101 12 C -0.237 4.237 13 C -0.111 4.111 14 C 0.354 3.646 15 O -0.425 6.425 16 N -0.389 5.389 17 C 0.002 3.998 18 C -0.132 4.132 19 C -0.084 4.084 20 C -0.103 4.103 21 C -0.143 4.143 22 C -0.109 4.109 23 C -0.143 4.143 24 C 0.349 3.651 25 N -0.416 5.416 26 O -0.414 6.414 27 C -0.070 4.070 28 C -0.156 4.156 29 H 0.097 0.903 30 H 0.121 0.879 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.236 0.764 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.143 0.857 41 H 0.230 0.770 42 H 0.236 0.764 43 H 0.156 0.844 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 26.604 -9.182 2.751 28.278 hybrid contribution 0.754 0.781 -0.051 1.086 sum 27.357 -8.402 2.701 28.745 Atomic orbital electron populations 1.69692 1.08095 1.30388 1.34497 1.26172 0.94761 1.01765 0.90943 0.86305 0.81363 0.79719 0.78856 1.19552 1.21651 1.16707 1.19524 0.92926 0.96345 1.38236 0.88829 1.17705 0.93158 0.91079 0.90209 1.21176 0.95707 1.04286 1.02928 1.20514 0.93743 0.97382 0.98511 1.20381 0.97966 1.00729 1.04600 1.19423 0.94263 0.96977 1.00473 1.18788 0.81382 0.83932 0.80544 1.90707 1.76743 1.40696 1.34369 1.45924 1.09627 1.35781 1.47613 1.21221 0.87296 0.92937 0.98340 1.20831 0.93112 0.97998 1.01216 1.19700 0.97951 0.95034 0.95749 1.21357 0.94649 0.99702 0.94554 1.21096 0.99276 0.93534 1.00415 1.21259 0.98208 0.97190 0.94210 1.19843 1.01813 0.94983 0.97644 1.18320 0.78640 0.84303 0.83808 1.43750 1.47331 1.19203 1.31351 1.90846 1.46751 1.79454 1.24351 1.21229 0.95033 0.91455 0.99318 1.21280 0.91093 1.01926 1.01333 0.90313 0.87887 0.88274 0.88583 0.76362 0.91453 0.91508 0.89806 0.89767 0.85176 0.85176 0.85716 0.77005 0.76379 0.84399 0.86662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.16 13.93 55.55 0.77 -20.39 16 2 C 0.08 2.15 5.40 -17.35 -0.09 2.06 16 3 Si 0.91 20.30 24.52 -169.99 -4.17 16.13 16 4 H -0.27 -5.76 6.71 56.52 0.38 -5.38 16 5 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.24 -5.56 6.87 56.52 0.39 -5.17 16 7 C -0.44 -11.92 9.57 -37.73 -0.36 -12.28 16 8 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 9 C 0.08 2.06 5.10 -106.87 -0.55 1.51 16 10 C -0.22 -5.15 7.17 -38.81 -0.28 -5.43 16 11 C -0.08 -1.68 10.01 -39.72 -0.40 -2.08 16 12 C -0.22 -4.14 9.55 -38.92 -0.37 -4.51 16 13 C -0.11 -2.31 5.87 -105.04 -0.62 -2.92 16 14 C 0.56 11.06 7.77 -12.31 -0.10 10.96 16 15 O -0.55 -12.49 16.33 5.32 0.09 -12.40 16 16 N -0.74 -10.57 5.51 -61.23 -0.34 -10.91 16 17 C 0.13 1.52 5.66 -4.04 -0.02 1.50 16 18 C -0.09 -0.79 5.45 -27.88 -0.15 -0.94 16 19 C -0.08 -0.72 5.13 -104.68 -0.54 -1.25 16 20 C -0.08 -0.61 9.69 -39.49 -0.38 -0.99 16 21 C -0.13 -0.75 10.03 -39.64 -0.40 -1.15 16 22 C -0.09 -0.54 9.54 -39.19 -0.37 -0.92 16 23 C -0.14 -1.21 5.87 -104.97 -0.62 -1.83 16 24 C 0.56 5.37 8.05 -12.33 -0.10 5.27 16 25 N -0.85 -4.24 8.83 30.53 0.27 -3.97 16 26 O -0.54 -7.46 17.18 5.32 0.09 -7.37 16 27 C -0.05 -0.50 9.24 -39.19 -0.36 -0.86 16 28 C -0.14 -3.29 9.34 -38.44 -0.36 -3.65 16 29 H 0.29 6.80 8.30 -40.82 -0.34 6.46 16 30 H 0.10 2.37 4.72 -52.49 -0.25 2.13 16 31 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.10 1.45 6.38 -52.49 -0.33 1.11 16 33 H 0.40 4.76 6.49 -40.82 -0.26 4.49 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.08 0.58 8.08 -51.93 -0.42 0.16 16 37 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 38 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 39 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 40 H 0.13 0.34 6.41 -52.49 -0.34 0.00 16 41 H 0.40 0.77 6.86 -40.82 -0.28 0.49 16 42 H 0.41 1.57 8.93 -40.82 -0.36 1.21 16 43 H 0.14 1.44 7.65 -52.48 -0.40 1.04 16 44 H 0.12 2.85 7.64 -52.49 -0.40 2.45 16 LS Contribution 373.47 15.07 5.63 5.63 Total: -1.00 -33.71 373.47 -8.89 -42.60 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -5.18 Total: 8.19 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -6.06 Total: -17.52 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.71 Total: -35.27 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: 0.18 Total: -19.77 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.17 Total: 16.13 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.71 -8.89 -42.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338685122.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.436 kcal (2) G-P(sol) polarization free energy of solvation -33.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds