Wall clock time and date at job start Tue Mar 31 2020 20:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86804 * 119.99710 * 2 1 4 4 H 1.48491 * 109.47163 * 275.41439 * 3 2 1 5 5 H 1.48505 * 109.47070 * 35.41239 * 3 2 1 6 6 H 1.48502 * 109.47067 * 155.40784 * 3 2 1 7 7 C 1.39929 * 120.00241 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00123 * 341.73548 * 7 2 1 9 9 C 1.41440 * 119.99760 * 161.73623 * 7 2 1 10 10 C 1.40781 * 120.17795 * 330.17339 * 9 7 2 11 11 C 1.37718 * 120.03947 * 180.02562 * 10 9 7 12 12 C 1.38375 * 120.41137 * 359.70151 * 11 10 9 13 13 C 1.39879 * 120.35370 * 0.55550 * 12 11 10 14 14 C 1.47888 * 120.02098 * 179.74451 * 13 12 11 15 15 O 1.21555 * 120.00124 * 179.72491 * 14 13 12 16 16 N 1.34774 * 120.00093 * 359.72499 * 14 13 12 17 17 C 1.46504 * 120.00118 * 180.02562 * 16 14 13 18 18 C 1.53005 * 109.47144 * 179.97438 * 17 16 14 19 19 C 1.50702 * 109.47139 * 179.97438 * 18 17 16 20 20 C 1.38379 * 119.92876 * 270.02372 * 19 18 17 21 21 C 1.38341 * 120.29356 * 180.02562 * 20 19 18 22 22 C 1.37979 * 120.13944 * 359.70101 * 21 20 19 23 23 C 1.39555 * 119.85753 * 0.52692 * 22 21 20 24 24 C 1.47841 * 120.14756 * 179.76942 * 23 22 21 25 25 N 1.34784 * 119.99939 * 359.72740 * 24 23 22 26 26 O 1.21557 * 120.00482 * 179.72484 * 24 23 22 27 27 C 1.37938 * 119.92557 * 90.00034 * 19 18 17 28 28 C 1.39030 * 119.95408 * 359.46654 * 13 12 11 29 29 H 0.97000 * 120.00300 * 0.02562 * 1 2 3 30 30 H 1.07993 * 119.98014 * 0.02562 * 10 9 7 31 31 H 1.07995 * 119.79211 * 179.97438 * 11 10 9 32 32 H 1.07999 * 119.82224 * 180.28012 * 12 11 10 33 33 H 0.97000 * 120.00109 * 0.02562 * 16 14 13 34 34 H 1.08997 * 109.47154 * 60.00175 * 17 16 14 35 35 H 1.08999 * 109.46880 * 299.99938 * 17 16 14 36 36 H 1.08997 * 109.46837 * 60.00121 * 18 17 16 37 37 H 1.08999 * 109.47148 * 300.00358 * 18 17 16 38 38 H 1.08002 * 119.85475 * 0.02562 * 20 19 18 39 39 H 1.07997 * 119.92785 * 179.97438 * 21 20 19 40 40 H 1.08002 * 120.07385 * 180.27961 * 22 21 20 41 41 H 0.96997 * 119.99754 * 359.97438 * 25 24 23 42 42 H 0.96992 * 119.99958 * 179.72856 * 25 24 23 43 43 H 1.08004 * 120.07077 * 0.02562 * 27 19 18 44 44 H 1.08002 * 120.20146 * 180.22622 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3753 2.1125 -1.3937 5 1 1.5014 2.6170 0.8113 6 1 3.5923 1.4100 0.5827 7 6 2.0080 -1.2118 0.0005 8 1 1.5089 -2.1234 0.2941 9 6 3.3689 -1.2427 -0.3833 10 6 3.8625 -0.3109 -1.3161 11 6 5.1880 -0.3439 -1.6882 12 6 6.0445 -1.2858 -1.1460 13 6 5.5709 -2.2230 -0.2219 14 6 6.4915 -3.2299 0.3487 15 8 6.0807 -4.0410 1.1554 16 7 7.7861 -3.2483 -0.0258 17 6 8.6979 -4.2462 0.5390 18 6 10.0968 -4.0494 -0.0488 19 6 11.0349 -5.0755 0.5327 20 6 11.7339 -4.7929 1.6930 21 6 12.5975 -5.7290 2.2331 22 6 12.7624 -6.9542 1.6203 23 6 12.0641 -7.2439 0.4473 24 6 12.2398 -8.5527 -0.2174 25 7 13.0800 -9.4672 0.3064 26 8 11.6265 -8.8042 -1.2364 27 6 11.1946 -6.2946 -0.0926 28 6 4.2354 -2.2035 0.1641 29 1 -0.4850 0.8400 -0.0004 30 1 3.2013 0.4303 -1.7400 31 1 5.5623 0.3726 -2.4044 32 1 7.0833 -1.3002 -1.4412 33 1 8.1140 -2.6009 -0.6693 34 1 8.3390 -5.2460 0.2947 35 1 8.7387 -4.1293 1.6220 36 1 10.4560 -3.0497 0.1952 37 1 10.0556 -4.1665 -1.1317 38 1 11.6048 -3.8371 2.1792 39 1 13.1404 -5.5020 3.1387 40 1 13.4334 -7.6860 2.0453 41 1 13.5697 -9.2664 1.1193 42 1 13.1923 -10.3274 -0.1275 43 1 10.6484 -6.5139 -0.9982 44 1 3.8663 -2.9230 0.8800 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338685122.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:29 Heat of formation + Delta-G solvation = -67.093718 kcal Electronic energy + Delta-G solvation = -26558.478699 eV Core-core repulsion = 22631.394342 eV Total energy + Delta-G solvation = -3927.084357 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.24306 -40.95616 -39.48852 -39.02422 -36.55611 -35.58046 -34.98140 -33.67449 -32.38903 -31.99333 -31.76066 -29.45223 -27.11037 -25.44205 -25.13704 -23.83590 -22.62700 -22.39193 -21.69750 -21.11568 -19.64619 -18.96092 -18.10385 -17.80345 -17.28942 -17.12299 -16.97602 -16.64764 -16.45538 -15.87746 -15.83847 -15.69828 -15.43492 -15.22934 -14.76376 -14.57895 -14.51199 -14.45098 -13.96469 -13.87172 -13.72176 -13.34622 -12.84841 -12.76826 -12.73864 -12.66899 -12.36688 -12.26922 -12.01238 -11.75637 -11.56518 -11.23451 -11.19586 -10.86498 -10.78018 -10.20854 -9.93566 -9.77581 -9.62634 -9.55305 -8.91326 -6.55655 -0.15868 0.17769 0.34878 0.74543 1.25869 1.42242 1.49179 1.80253 1.94923 2.13133 2.18104 2.50827 2.65376 2.85461 3.45446 3.72239 3.81994 3.88848 3.92235 4.06834 4.12795 4.19249 4.27487 4.35797 4.42525 4.50804 4.53928 4.60201 4.78010 4.88887 4.91769 4.95624 5.00165 5.08969 5.16639 5.28809 5.38826 5.42403 5.43499 5.57408 5.65374 5.71578 5.81579 5.84554 5.93070 6.11122 6.29868 6.38451 6.57864 6.66247 6.73886 7.23271 7.24982 8.17798 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.026170 B = 0.001793 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.660353 B =15611.402935 C =15873.618320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.044 3.956 3 Si 0.970 3.030 4 H -0.246 1.246 5 H -0.277 1.277 6 H -0.251 1.251 7 C -0.490 4.490 8 H 0.048 0.952 9 C 0.065 3.935 10 C -0.224 4.224 11 C -0.082 4.082 12 C -0.181 4.181 13 C -0.114 4.114 14 C 0.560 3.440 15 O -0.589 6.589 16 N -0.709 5.709 17 C 0.126 3.874 18 C -0.081 4.081 19 C -0.096 4.096 20 C -0.086 4.086 21 C -0.124 4.124 22 C -0.080 4.080 23 C -0.159 4.159 24 C 0.557 3.443 25 N -0.828 5.828 26 O -0.594 6.594 27 C -0.075 4.075 28 C -0.169 4.169 29 H 0.295 0.705 30 H 0.107 0.893 31 H 0.149 0.851 32 H 0.153 0.847 33 H 0.417 0.583 34 H 0.048 0.952 35 H 0.063 0.937 36 H 0.109 0.891 37 H 0.090 0.910 38 H 0.149 0.851 39 H 0.162 0.838 40 H 0.161 0.839 41 H 0.418 0.582 42 H 0.412 0.588 43 H 0.116 0.884 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.104 -6.621 2.538 33.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.171 4.171 3 Si 0.792 3.208 4 H -0.171 1.171 5 H -0.204 1.204 6 H -0.174 1.174 7 C -0.520 4.520 8 H 0.066 0.934 9 C 0.062 3.938 10 C -0.244 4.244 11 C -0.100 4.100 12 C -0.200 4.200 13 C -0.117 4.117 14 C 0.349 3.651 15 O -0.471 6.471 16 N -0.362 5.362 17 C 0.003 3.997 18 C -0.118 4.118 19 C -0.097 4.097 20 C -0.105 4.105 21 C -0.142 4.142 22 C -0.098 4.098 23 C -0.162 4.162 24 C 0.344 3.656 25 N -0.393 5.393 26 O -0.476 6.476 27 C -0.094 4.094 28 C -0.190 4.190 29 H 0.106 0.894 30 H 0.124 0.876 31 H 0.167 0.833 32 H 0.171 0.829 33 H 0.256 0.744 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.127 0.873 37 H 0.108 0.892 38 H 0.167 0.833 39 H 0.179 0.821 40 H 0.178 0.822 41 H 0.251 0.749 42 H 0.244 0.756 43 H 0.134 0.866 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 32.128 -7.145 2.505 33.008 hybrid contribution -0.621 -0.044 0.036 0.624 sum 31.506 -7.189 2.542 32.416 Atomic orbital electron populations 1.69728 1.09360 1.31658 1.36806 1.26937 0.95457 1.04478 0.90198 0.85435 0.79559 0.75767 0.80087 1.17055 1.20384 1.17418 1.19457 0.94569 0.95726 1.42206 0.93416 1.17782 0.92473 0.92390 0.91140 1.21398 0.97539 1.03401 1.02029 1.21067 0.92227 0.98096 0.98604 1.21039 1.00453 0.97586 1.00911 1.19707 0.93332 0.97909 1.00742 1.18632 0.82849 0.83237 0.80342 1.90695 1.77819 1.42182 1.36362 1.45712 1.07896 1.35893 1.46698 1.21347 0.88780 0.91238 0.98366 1.20745 0.90434 0.99338 1.01333 1.19703 0.98741 0.94588 0.96633 1.21679 0.94166 1.00824 0.93786 1.21516 0.98668 0.92927 1.01082 1.21647 0.97409 0.98088 0.92663 1.19922 1.02795 0.94506 0.98957 1.18608 0.78564 0.85189 0.83252 1.43568 1.45687 1.18589 1.31424 1.90813 1.49286 1.80581 1.26904 1.21226 0.96040 0.92729 0.99379 1.21202 0.92996 1.02352 1.02425 0.89439 0.87560 0.83298 0.82940 0.74386 0.93404 0.91838 0.87313 0.89164 0.83304 0.82080 0.82163 0.74931 0.75571 0.86567 0.89504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.33 13.93 21.82 0.30 -47.03 16 2 C 0.04 2.37 5.40 85.25 0.46 2.83 16 3 Si 0.97 41.76 24.52 68.60 1.68 43.44 16 4 H -0.25 -9.58 6.71 99.48 0.67 -8.92 16 5 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 6 H -0.25 -10.92 6.87 99.48 0.68 -10.24 16 7 C -0.49 -28.59 9.57 23.47 0.22 -28.36 16 8 H 0.05 3.06 8.06 -2.91 -0.02 3.04 16 9 C 0.06 3.38 5.10 -21.32 -0.11 3.27 16 10 C -0.22 -10.04 7.17 22.77 0.16 -9.88 16 11 C -0.08 -2.92 10.01 22.18 0.22 -2.69 16 12 C -0.18 -6.01 9.55 22.70 0.22 -5.79 16 13 C -0.11 -4.71 5.87 -20.13 -0.12 -4.83 16 14 C 0.56 21.48 7.77 86.80 0.67 22.16 16 15 O -0.59 -27.63 16.33 -3.89 -0.06 -27.70 16 16 N -0.71 -18.38 5.51 -465.91 -2.57 -20.95 16 17 C 0.13 2.83 5.66 86.38 0.49 3.32 16 18 C -0.08 -1.14 5.45 29.85 0.16 -0.97 16 19 C -0.10 -1.46 5.13 -19.90 -0.10 -1.56 16 20 C -0.09 -0.95 9.69 22.33 0.22 -0.74 16 21 C -0.12 -1.00 10.03 22.23 0.22 -0.78 16 22 C -0.08 -0.70 9.54 22.53 0.21 -0.49 16 23 C -0.16 -2.59 5.87 -20.09 -0.12 -2.71 16 24 C 0.56 10.46 8.05 86.78 0.70 11.16 16 25 N -0.83 -6.84 8.83 -175.59 -1.55 -8.39 16 26 O -0.59 -17.29 17.18 -3.90 -0.07 -17.35 16 27 C -0.07 -1.43 9.24 22.53 0.21 -1.22 16 28 C -0.17 -8.57 9.34 23.01 0.21 -8.35 16 29 H 0.30 14.63 8.30 -92.71 -0.77 13.86 16 30 H 0.11 4.67 4.72 -2.91 -0.01 4.66 16 31 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 32 H 0.15 3.40 6.38 -2.91 -0.02 3.38 16 33 H 0.42 7.80 6.49 -92.71 -0.60 7.20 16 34 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.11 1.01 8.08 -2.39 -0.02 0.99 16 37 H 0.09 1.17 8.08 -2.39 -0.02 1.15 16 38 H 0.15 1.05 8.06 -2.91 -0.02 1.02 16 39 H 0.16 0.32 8.06 -2.91 -0.02 0.30 16 40 H 0.16 0.13 6.41 -2.91 -0.02 0.12 16 41 H 0.42 0.34 6.86 -92.71 -0.64 -0.29 16 42 H 0.41 2.63 8.93 -92.71 -0.83 1.80 16 43 H 0.12 2.63 7.65 -2.91 -0.02 2.60 16 44 H 0.09 4.75 7.64 -2.91 -0.02 4.73 16 Total: -1.00 -82.76 373.47 0.64 -82.12 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: -1.04 Total: 21.49 kcal Atomic # 6 Polarization: -29.59 SS G_CDS: 3.94 Total: -25.64 kcal Atomic # 7 Polarization: -72.56 SS G_CDS: -3.81 Total: -76.37 kcal Atomic # 8 Polarization: -44.92 SS G_CDS: -0.13 Total: -45.05 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 1.68 Total: 43.44 kcal Total: -82.76 0.64 -82.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338685122.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.028 kcal (2) G-P(sol) polarization free energy of solvation -82.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds