Wall clock time and date at job start Tue Mar 31 2020 22:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.47334 * 2 1 4 4 C 1.34771 * 120.00412 * 297.77081 * 3 2 1 5 5 O 1.21579 * 120.00039 * 359.97438 * 4 3 2 6 6 C 1.47638 * 120.00026 * 180.02562 * 4 3 2 7 7 C 1.40014 * 119.89702 * 359.71386 * 6 4 3 8 8 C 1.36318 * 120.10814 * 180.27411 * 7 6 4 9 9 C 1.40888 * 119.89206 * 0.03215 * 8 7 6 10 10 C 1.41105 * 120.10178 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99756 * 208.43204 * 10 9 8 12 12 C 1.40232 * 120.00326 * 28.43506 * 10 9 8 13 13 N 1.30642 * 119.99815 * 11.37025 * 12 10 9 14 14 Si 1.86796 * 120.00248 * 191.37492 * 12 10 9 15 15 H 1.48505 * 109.47125 * 59.99212 * 14 12 10 16 16 H 1.48499 * 109.47374 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46938 * 299.99845 * 14 12 10 18 18 C 1.40884 * 119.79467 * 359.97438 * 9 8 7 19 19 C 1.36321 * 119.89375 * 359.97438 * 18 9 8 20 20 C 1.50705 * 109.46709 * 240.00275 * 2 1 3 21 21 N 1.34778 * 119.99925 * 155.00003 * 20 2 1 22 22 O 1.21282 * 120.00159 * 335.00253 * 20 2 1 23 23 C 1.50695 * 109.47039 * 120.00823 * 2 1 3 24 24 C 1.38233 * 120.00195 * 85.26474 * 23 2 1 25 25 C 1.38242 * 119.99742 * 179.76511 * 24 23 2 26 26 C 1.38224 * 120.00198 * 0.50324 * 25 24 23 27 27 C 1.38243 * 119.99984 * 359.74730 * 26 25 24 28 28 C 1.38233 * 119.99832 * 265.53090 * 23 2 1 29 29 H 1.08995 * 109.47221 * 59.99234 * 1 2 3 30 30 H 1.08992 * 109.47647 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46381 * 299.99473 * 1 2 3 32 32 H 0.97009 * 119.99670 * 117.76826 * 3 2 1 33 33 H 1.08001 * 119.94666 * 0.26760 * 7 6 4 34 34 H 1.08003 * 120.05127 * 179.97438 * 8 7 6 35 35 H 0.96995 * 120.00354 * 180.02562 * 13 12 10 36 36 H 1.08001 * 120.05509 * 179.97438 * 18 9 8 37 37 H 1.07993 * 119.95317 * 179.97438 * 19 18 9 38 38 H 0.96999 * 119.99934 * 0.02562 * 21 20 2 39 39 H 0.96995 * 120.00033 * 180.02562 * 21 20 2 40 40 H 1.08003 * 120.00075 * 359.97438 * 24 23 2 41 41 H 1.08002 * 119.99593 * 180.23194 * 25 24 23 42 42 H 1.08001 * 120.00367 * 179.72502 * 26 25 24 43 43 H 1.07997 * 120.00007 * 179.97438 * 27 26 25 44 44 H 1.08001 * 120.00276 * 0.02562 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.7304 2.1978 -1.0327 5 8 1.0656 1.7882 -1.9646 6 6 2.2231 3.5896 -1.0329 7 6 2.9843 4.0606 0.0438 8 6 3.4367 5.3465 0.0507 9 6 3.1365 6.2022 -1.0276 10 6 3.6021 7.5342 -1.0248 11 1 3.0478 8.3010 -1.5455 12 6 4.7844 7.8624 -0.3458 13 7 5.5701 6.9153 0.0928 14 14 5.2358 9.6536 -0.0685 15 1 4.1701 10.3154 0.7263 16 1 6.5228 9.7315 0.6682 17 1 5.3730 10.3381 -1.3792 18 6 2.3701 5.7238 -2.1086 19 6 1.9230 4.4360 -2.1071 20 6 2.0323 -0.7104 -1.2306 21 7 3.2542 -0.4246 -1.7221 22 8 1.3369 -1.5392 -1.7786 23 6 2.0323 -0.7106 1.2303 24 6 2.1695 -2.0861 1.2265 25 6 2.6349 -2.7373 2.3536 26 6 2.9532 -2.0142 3.4878 27 6 2.8110 -0.6391 3.4933 28 6 2.3506 0.0126 2.3646 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8901 32 1 2.5491 1.7079 0.7434 33 1 3.2134 3.4040 0.8701 34 1 4.0235 5.7089 0.8818 35 1 6.3877 7.1422 0.5628 36 1 2.1372 6.3763 -2.9371 37 1 1.3350 4.0684 -2.9351 38 1 3.8105 0.2381 -1.2836 39 1 3.5773 -0.8815 -2.5143 40 1 1.9164 -2.6516 0.3419 41 1 2.7457 -3.8117 2.3493 42 1 3.3126 -2.5234 4.3698 43 1 3.0593 -0.0742 4.3796 44 1 2.2390 1.0868 2.3692 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340137429.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:52 Heat of formation + Delta-G solvation = -30.221195 kcal Electronic energy + Delta-G solvation = -28757.575195 eV Core-core repulsion = 24832.089750 eV Total energy + Delta-G solvation = -3925.485444 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.94638 -38.92308 -38.49913 -37.18065 -35.13562 -33.92621 -33.33982 -31.90411 -31.03405 -30.15448 -29.53374 -29.07872 -26.02360 -24.70283 -23.20479 -22.23770 -21.87113 -21.06026 -20.10651 -19.24834 -17.98074 -17.58318 -17.39568 -16.74446 -16.39767 -15.57885 -15.50493 -14.89946 -14.49935 -14.43194 -14.23302 -14.06797 -13.96162 -13.70814 -13.45138 -13.25108 -12.85927 -12.84443 -12.40980 -12.21299 -12.03339 -11.97665 -11.84539 -11.47750 -11.34290 -11.29849 -11.22197 -11.04668 -10.70541 -10.10368 -10.03884 -9.62331 -9.49387 -9.48355 -9.16272 -9.12109 -9.02142 -8.68744 -7.81671 -7.59245 -7.05422 -4.69383 1.08571 1.19765 2.10657 2.71962 2.89019 2.90650 2.93598 2.94424 3.42713 3.49574 3.69300 3.71439 3.79840 4.43930 4.49361 4.70799 4.81361 4.94773 5.00190 5.19926 5.28389 5.39007 5.47589 5.67702 5.75469 5.81077 5.91213 5.94883 5.95989 6.22683 6.24523 6.28259 6.31422 6.43209 6.67256 6.70039 6.76010 6.76954 6.90928 6.94970 7.04435 7.35542 7.45427 7.54396 7.68027 7.78071 7.99359 8.03730 8.32719 8.39531 8.56197 8.66372 8.89262 9.85908 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.015353 B = 0.002973 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.271492 B = 9416.319856 C =10629.204383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.206 3.794 3 N -0.738 5.738 4 C 0.571 3.429 5 O -0.556 6.556 6 C -0.281 4.281 7 C -0.066 4.066 8 C -0.171 4.171 9 C 0.130 3.870 10 C -0.443 4.443 11 H 0.084 0.916 12 C 0.073 3.927 13 N -0.779 5.779 14 Si 0.916 3.084 15 H -0.261 1.261 16 H -0.276 1.276 17 H -0.262 1.262 18 C -0.235 4.235 19 C -0.022 4.022 20 C 0.539 3.461 21 N -0.843 5.843 22 O -0.544 6.544 23 C -0.083 4.083 24 C -0.107 4.107 25 C -0.115 4.115 26 C -0.118 4.118 27 C -0.114 4.114 28 C -0.109 4.109 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.401 0.599 33 H 0.088 0.912 34 H 0.123 0.877 35 H 0.287 0.713 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.402 0.598 39 H 0.399 0.601 40 H 0.128 0.872 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.127 0.873 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.309 -11.375 8.109 13.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.116 3.884 3 N -0.397 5.397 4 C 0.366 3.634 5 O -0.436 6.436 6 C -0.286 4.286 7 C -0.085 4.085 8 C -0.190 4.190 9 C 0.127 3.873 10 C -0.471 4.471 11 H 0.102 0.898 12 C -0.148 4.148 13 N -0.402 5.402 14 Si 0.740 3.260 15 H -0.185 1.185 16 H -0.200 1.200 17 H -0.187 1.187 18 C -0.255 4.255 19 C -0.041 4.041 20 C 0.322 3.678 21 N -0.406 5.406 22 O -0.420 6.420 23 C -0.084 4.084 24 C -0.125 4.125 25 C -0.133 4.133 26 C -0.137 4.137 27 C -0.132 4.132 28 C -0.128 4.128 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.240 0.760 33 H 0.106 0.894 34 H 0.141 0.859 35 H 0.098 0.902 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.231 0.769 39 H 0.230 0.770 40 H 0.146 0.854 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.144 0.856 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.508 -12.198 7.338 14.244 hybrid contribution 1.120 1.133 0.429 1.650 sum 0.612 -11.065 7.767 13.533 Atomic orbital electron populations 1.22032 0.90917 1.03334 1.03936 1.19154 0.96305 0.82369 0.90612 1.46318 1.57916 1.10179 1.25251 1.18683 0.78414 0.85812 0.80457 1.90683 1.40500 1.76745 1.35720 1.18834 1.15393 0.92748 1.01598 1.20469 0.96542 0.96001 0.95480 1.21032 1.04614 0.93476 0.99892 1.17805 0.87503 0.92886 0.89127 1.19828 1.05743 0.94715 1.26785 0.89799 1.26077 0.95702 1.00191 0.92812 1.69690 1.09695 1.34891 1.25970 0.86214 0.78536 0.81463 0.79782 1.18528 1.20036 1.18684 1.20774 1.09436 0.95503 0.99762 1.20366 0.95196 0.93080 0.95441 1.20345 0.81043 0.81496 0.84872 1.43692 1.18574 1.45382 1.32903 1.90693 1.56151 1.34842 1.60299 1.19557 1.00563 0.94079 0.94226 1.21116 0.98717 0.93517 0.99187 1.21124 0.99177 0.99995 0.93033 1.21212 0.99884 0.94329 0.98227 1.21150 0.99258 0.94648 0.98122 1.20980 0.99035 1.00191 0.92549 0.89535 0.91034 0.91773 0.76043 0.89440 0.85933 0.90220 0.88311 0.88053 0.76900 0.77026 0.85401 0.85802 0.85922 0.85551 0.85451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 7.95 37.16 0.30 -1.94 16 2 C 0.21 3.05 0.83 -134.12 -0.11 2.94 16 3 N -0.74 -11.31 4.14 -50.77 -0.21 -11.52 16 4 C 0.57 11.08 6.92 -12.43 -0.09 10.99 16 5 O -0.56 -12.35 13.57 5.30 0.07 -12.27 16 6 C -0.28 -5.93 5.89 -104.73 -0.62 -6.55 16 7 C -0.07 -1.34 9.47 -39.61 -0.38 -1.71 16 8 C -0.17 -3.93 8.60 -39.27 -0.34 -4.27 16 9 C 0.13 3.16 5.55 -106.81 -0.59 2.56 16 10 C -0.44 -10.61 9.05 -37.75 -0.34 -10.95 16 11 H 0.08 1.92 7.88 -52.49 -0.41 1.51 16 12 C 0.07 1.63 5.24 -17.31 -0.09 1.54 16 13 N -0.78 -17.89 10.84 55.56 0.60 -17.29 16 14 Si 0.92 16.77 29.58 -169.99 -5.03 11.75 16 15 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 16 H -0.28 -4.91 7.11 56.52 0.40 -4.51 16 17 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 18 C -0.24 -5.44 9.73 -39.27 -0.38 -5.82 16 19 C -0.02 -0.48 9.52 -39.60 -0.38 -0.86 16 20 C 0.54 8.85 4.28 -10.98 -0.05 8.81 16 21 N -0.84 -11.72 8.55 31.22 0.27 -11.45 16 22 O -0.54 -10.42 16.34 5.56 0.09 -10.33 16 23 C -0.08 -1.04 4.80 -104.63 -0.50 -1.54 16 24 C -0.11 -1.27 9.15 -39.58 -0.36 -1.63 16 25 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 26 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 27 C -0.11 -1.07 10.05 -39.58 -0.40 -1.46 16 28 C -0.11 -1.19 9.03 -39.58 -0.36 -1.55 16 29 H 0.09 1.59 6.33 -51.93 -0.33 1.26 16 30 H 0.07 1.06 7.87 -51.93 -0.41 0.65 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.40 5.39 4.35 -40.82 -0.18 5.22 16 33 H 0.09 1.47 6.37 -52.49 -0.33 1.13 16 34 H 0.12 2.87 6.20 -52.48 -0.33 2.55 16 35 H 0.29 5.96 8.29 -40.82 -0.34 5.62 16 36 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 37 H 0.10 2.22 7.63 -52.49 -0.40 1.82 16 38 H 0.40 5.20 8.14 -40.82 -0.33 4.86 16 39 H 0.40 4.91 8.93 -40.82 -0.36 4.55 16 40 H 0.13 1.63 6.76 -52.48 -0.36 1.27 16 41 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 43 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 44 H 0.13 1.30 6.40 -52.49 -0.34 0.96 16 LS Contribution 366.04 15.07 5.52 5.52 Total: -1.00 -29.10 366.04 -9.19 -38.30 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: -5.02 Total: 21.72 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -5.48 Total: -14.41 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 0.66 Total: -40.27 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: 0.16 Total: -22.60 kcal Atomic # 14 Polarization: 16.77 SS G_CDS: -5.03 Total: 11.75 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.10 -9.19 -38.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340137429.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.074 kcal (2) G-P(sol) polarization free energy of solvation -29.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds