Wall clock time and date at job start Tue Mar 31 2020 22:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.47334 * 2 1 4 4 C 1.34771 * 120.00412 * 297.77081 * 3 2 1 5 5 O 1.21579 * 120.00039 * 359.97438 * 4 3 2 6 6 C 1.47638 * 120.00026 * 180.02562 * 4 3 2 7 7 C 1.40014 * 119.89702 * 359.71386 * 6 4 3 8 8 C 1.36318 * 120.10814 * 180.27411 * 7 6 4 9 9 C 1.40888 * 119.89206 * 0.03215 * 8 7 6 10 10 C 1.41105 * 120.10178 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99756 * 208.43204 * 10 9 8 12 12 C 1.40232 * 120.00326 * 28.43506 * 10 9 8 13 13 N 1.30642 * 119.99815 * 11.37025 * 12 10 9 14 14 Si 1.86796 * 120.00248 * 191.37492 * 12 10 9 15 15 H 1.48505 * 109.47125 * 59.99212 * 14 12 10 16 16 H 1.48499 * 109.47374 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46938 * 299.99845 * 14 12 10 18 18 C 1.40884 * 119.79467 * 359.97438 * 9 8 7 19 19 C 1.36321 * 119.89375 * 359.97438 * 18 9 8 20 20 C 1.50705 * 109.46709 * 240.00275 * 2 1 3 21 21 N 1.34778 * 119.99925 * 155.00003 * 20 2 1 22 22 O 1.21282 * 120.00159 * 335.00253 * 20 2 1 23 23 C 1.50695 * 109.47039 * 120.00823 * 2 1 3 24 24 C 1.38233 * 120.00195 * 85.26474 * 23 2 1 25 25 C 1.38242 * 119.99742 * 179.76511 * 24 23 2 26 26 C 1.38224 * 120.00198 * 0.50324 * 25 24 23 27 27 C 1.38243 * 119.99984 * 359.74730 * 26 25 24 28 28 C 1.38233 * 119.99832 * 265.53090 * 23 2 1 29 29 H 1.08995 * 109.47221 * 59.99234 * 1 2 3 30 30 H 1.08992 * 109.47647 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46381 * 299.99473 * 1 2 3 32 32 H 0.97009 * 119.99670 * 117.76826 * 3 2 1 33 33 H 1.08001 * 119.94666 * 0.26760 * 7 6 4 34 34 H 1.08003 * 120.05127 * 179.97438 * 8 7 6 35 35 H 0.96995 * 120.00354 * 180.02562 * 13 12 10 36 36 H 1.08001 * 120.05509 * 179.97438 * 18 9 8 37 37 H 1.07993 * 119.95317 * 179.97438 * 19 18 9 38 38 H 0.96999 * 119.99934 * 0.02562 * 21 20 2 39 39 H 0.96995 * 120.00033 * 180.02562 * 21 20 2 40 40 H 1.08003 * 120.00075 * 359.97438 * 24 23 2 41 41 H 1.08002 * 119.99593 * 180.23194 * 25 24 23 42 42 H 1.08001 * 120.00367 * 179.72502 * 26 25 24 43 43 H 1.07997 * 120.00007 * 179.97438 * 27 26 25 44 44 H 1.08001 * 120.00276 * 0.02562 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.7304 2.1978 -1.0327 5 8 1.0656 1.7882 -1.9646 6 6 2.2231 3.5896 -1.0329 7 6 2.9843 4.0606 0.0438 8 6 3.4367 5.3465 0.0507 9 6 3.1365 6.2022 -1.0276 10 6 3.6021 7.5342 -1.0248 11 1 3.0478 8.3010 -1.5455 12 6 4.7844 7.8624 -0.3458 13 7 5.5701 6.9153 0.0928 14 14 5.2358 9.6536 -0.0685 15 1 4.1701 10.3154 0.7263 16 1 6.5228 9.7315 0.6682 17 1 5.3730 10.3381 -1.3792 18 6 2.3701 5.7238 -2.1086 19 6 1.9230 4.4360 -2.1071 20 6 2.0323 -0.7104 -1.2306 21 7 3.2542 -0.4246 -1.7221 22 8 1.3369 -1.5392 -1.7786 23 6 2.0323 -0.7106 1.2303 24 6 2.1695 -2.0861 1.2265 25 6 2.6349 -2.7373 2.3536 26 6 2.9532 -2.0142 3.4878 27 6 2.8110 -0.6391 3.4933 28 6 2.3506 0.0126 2.3646 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8901 32 1 2.5491 1.7079 0.7434 33 1 3.2134 3.4040 0.8701 34 1 4.0235 5.7089 0.8818 35 1 6.3877 7.1422 0.5628 36 1 2.1372 6.3763 -2.9371 37 1 1.3350 4.0684 -2.9351 38 1 3.8105 0.2381 -1.2836 39 1 3.5773 -0.8815 -2.5143 40 1 1.9164 -2.6516 0.3419 41 1 2.7457 -3.8117 2.3493 42 1 3.3126 -2.5234 4.3698 43 1 3.0593 -0.0742 4.3796 44 1 2.2390 1.0868 2.3692 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340137429.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:51 Heat of formation + Delta-G solvation = -47.833875 kcal Electronic energy + Delta-G solvation = -28758.338938 eV Core-core repulsion = 24832.089750 eV Total energy + Delta-G solvation = -3926.249187 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.18180 -40.27668 -39.65451 -38.84571 -36.46454 -35.63625 -34.57629 -33.22395 -31.92262 -31.54732 -31.27344 -30.25368 -27.69885 -25.92664 -24.32887 -23.44688 -22.98143 -22.77979 -21.48402 -20.58338 -19.38798 -19.17559 -18.65501 -18.03302 -17.51614 -17.15091 -16.59386 -15.99570 -15.81469 -15.76522 -15.71355 -15.36307 -15.20096 -15.02450 -14.94641 -14.47942 -14.23687 -13.94178 -13.82479 -13.67566 -13.42373 -13.28810 -13.16171 -13.05357 -12.82682 -12.62374 -12.34628 -12.26019 -12.01489 -11.75608 -11.37018 -11.32109 -11.15400 -10.75140 -10.68439 -10.30645 -9.89409 -9.73376 -9.56240 -9.36045 -8.73131 -6.48566 0.27361 0.41698 0.42982 1.16104 1.41053 1.43037 1.45956 1.52687 2.05563 2.14863 2.19252 2.46824 2.79621 2.82277 3.39628 3.67849 3.75651 3.97969 4.01584 4.07216 4.23305 4.27404 4.32439 4.45023 4.55164 4.56734 4.65156 4.71443 4.92845 4.94905 5.04995 5.07494 5.11306 5.17738 5.26416 5.31191 5.50345 5.54511 5.57661 5.60776 5.76782 5.81785 5.94360 6.00885 6.01855 6.25275 6.26524 6.55484 6.59364 6.79886 6.89701 7.17254 7.35209 8.20805 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.015353 B = 0.002973 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.271492 B = 9416.319856 C =10629.204383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.209 3.791 3 N -0.716 5.716 4 C 0.577 3.423 5 O -0.585 6.585 6 C -0.283 4.283 7 C -0.053 4.053 8 C -0.189 4.189 9 C 0.104 3.896 10 C -0.477 4.477 11 H 0.082 0.918 12 C 0.038 3.962 13 N -0.802 5.802 14 Si 0.985 3.015 15 H -0.259 1.259 16 H -0.264 1.264 17 H -0.263 1.263 18 C -0.250 4.250 19 C -0.033 4.033 20 C 0.532 3.468 21 N -0.833 5.833 22 O -0.578 6.578 23 C -0.097 4.097 24 C -0.121 4.121 25 C -0.115 4.115 26 C -0.112 4.112 27 C -0.112 4.112 28 C -0.116 4.116 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.413 0.587 33 H 0.128 0.872 34 H 0.117 0.883 35 H 0.296 0.704 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.409 0.591 39 H 0.407 0.593 40 H 0.111 0.889 41 H 0.145 0.855 42 H 0.153 0.847 43 H 0.152 0.848 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.644 -11.871 10.891 16.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.120 3.880 3 N -0.374 5.374 4 C 0.371 3.629 5 O -0.467 6.467 6 C -0.288 4.288 7 C -0.072 4.072 8 C -0.208 4.208 9 C 0.101 3.899 10 C -0.504 4.504 11 H 0.100 0.900 12 C -0.180 4.180 13 N -0.426 5.426 14 Si 0.806 3.194 15 H -0.183 1.183 16 H -0.188 1.188 17 H -0.187 1.187 18 C -0.270 4.270 19 C -0.052 4.052 20 C 0.316 3.684 21 N -0.395 5.395 22 O -0.457 6.457 23 C -0.098 4.098 24 C -0.140 4.140 25 C -0.133 4.133 26 C -0.130 4.130 27 C -0.129 4.129 28 C -0.134 4.134 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.254 0.746 33 H 0.145 0.855 34 H 0.135 0.865 35 H 0.107 0.893 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.238 0.762 39 H 0.238 0.762 40 H 0.129 0.871 41 H 0.162 0.838 42 H 0.171 0.829 43 H 0.170 0.830 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.860 -12.707 10.144 16.282 hybrid contribution 0.696 1.131 -0.412 1.390 sum 1.555 -11.576 9.732 15.203 Atomic orbital electron populations 1.21979 0.91685 1.03253 1.03049 1.19128 0.95822 0.81616 0.91478 1.46040 1.56969 1.10120 1.24285 1.18426 0.78007 0.85536 0.80899 1.90687 1.41723 1.77176 1.37133 1.19067 1.14906 0.93524 1.01284 1.20740 0.94802 0.95569 0.96048 1.21063 1.05601 0.94516 0.99603 1.18134 0.88182 0.93724 0.89861 1.20069 1.07018 0.94851 1.28509 0.90012 1.26822 0.94944 1.04250 0.91972 1.69709 1.10153 1.36730 1.26045 0.85182 0.78544 0.76125 0.79568 1.18299 1.18796 1.18696 1.20886 1.10050 0.96018 1.00006 1.20482 0.95429 0.93170 0.96107 1.20670 0.81318 0.81229 0.85163 1.43630 1.17929 1.45055 1.32922 1.90670 1.57197 1.36479 1.61367 1.19350 1.02545 0.94269 0.93612 1.21078 0.99927 0.93319 0.99652 1.21391 0.98243 1.01203 0.92487 1.21602 0.98335 0.94300 0.98725 1.21488 0.98037 0.95156 0.98267 1.21103 0.99264 1.00550 0.92530 0.92731 0.90792 0.90139 0.74607 0.85469 0.86506 0.89312 0.88105 0.88213 0.76167 0.76189 0.87115 0.83758 0.82921 0.83014 0.84824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.39 7.95 71.98 0.57 -3.82 16 2 C 0.21 6.07 0.83 2.11 0.00 6.07 16 3 N -0.72 -20.99 4.14 -432.81 -1.79 -22.79 16 4 C 0.58 22.12 6.92 86.73 0.60 22.72 16 5 O -0.58 -26.26 13.57 -3.97 -0.05 -26.32 16 6 C -0.28 -11.85 5.89 -19.93 -0.12 -11.96 16 7 C -0.05 -2.08 9.47 22.25 0.21 -1.87 16 8 C -0.19 -8.66 8.60 22.47 0.19 -8.47 16 9 C 0.10 5.16 5.55 -21.28 -0.12 5.04 16 10 C -0.48 -23.29 9.05 23.46 0.21 -23.08 16 11 H 0.08 3.86 7.88 -2.91 -0.02 3.84 16 12 C 0.04 1.72 5.24 85.35 0.45 2.16 16 13 N -0.80 -36.61 10.84 21.87 0.24 -36.38 16 14 Si 0.99 33.82 29.58 68.60 2.03 35.85 16 15 H -0.26 -8.73 7.11 99.48 0.71 -8.02 16 16 H -0.26 -8.47 7.11 99.48 0.71 -7.77 16 17 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 18 C -0.25 -11.92 9.73 22.47 0.22 -11.70 16 19 C -0.03 -1.49 9.52 22.26 0.21 -1.28 16 20 C 0.53 17.52 4.28 87.66 0.38 17.89 16 21 N -0.83 -22.84 8.55 -173.53 -1.48 -24.32 16 22 O -0.58 -22.68 16.34 -3.03 -0.05 -22.72 16 23 C -0.10 -2.25 4.80 -19.87 -0.10 -2.35 16 24 C -0.12 -2.71 9.15 22.27 0.20 -2.50 16 25 C -0.12 -1.91 10.05 22.27 0.22 -1.69 16 26 C -0.11 -1.53 10.05 22.27 0.22 -1.30 16 27 C -0.11 -1.65 10.05 22.27 0.22 -1.42 16 28 C -0.12 -2.20 9.03 22.27 0.20 -1.99 16 29 H 0.05 2.05 6.33 -2.39 -0.02 2.04 16 30 H 0.07 2.23 7.87 -2.39 -0.02 2.21 16 31 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.41 10.08 4.35 -92.70 -0.40 9.67 16 33 H 0.13 3.89 6.37 -2.91 -0.02 3.87 16 34 H 0.12 5.46 6.20 -2.91 -0.02 5.45 16 35 H 0.30 12.05 8.29 -92.71 -0.77 11.28 16 36 H 0.10 4.58 8.06 -2.91 -0.02 4.56 16 37 H 0.10 4.50 7.63 -2.91 -0.02 4.48 16 38 H 0.41 10.13 8.14 -92.71 -0.75 9.37 16 39 H 0.41 9.92 8.93 -92.71 -0.83 9.09 16 40 H 0.11 2.83 6.76 -2.91 -0.02 2.81 16 41 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 42 H 0.15 1.19 8.06 -2.91 -0.02 1.16 16 43 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 44 H 0.13 2.28 6.40 -2.91 -0.02 2.26 16 Total: -1.00 -64.65 366.04 1.78 -62.87 By element: Atomic # 1 Polarization: 54.26 SS G_CDS: -0.90 Total: 53.36 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: 3.79 Total: -19.56 kcal Atomic # 7 Polarization: -80.45 SS G_CDS: -3.04 Total: -83.48 kcal Atomic # 8 Polarization: -48.94 SS G_CDS: -0.10 Total: -49.04 kcal Atomic # 14 Polarization: 33.82 SS G_CDS: 2.03 Total: 35.85 kcal Total: -64.65 1.78 -62.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340137429.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.036 kcal (2) G-P(sol) polarization free energy of solvation -64.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds