Wall clock time and date at job start Tue Mar 31 2020 22:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46501 * 109.46526 * 2 1 4 4 C 1.34774 * 120.00286 * 64.87610 * 3 2 1 5 5 O 1.21589 * 120.00075 * 359.97438 * 4 3 2 6 6 C 1.47635 * 120.00001 * 179.97438 * 4 3 2 7 7 C 1.40017 * 119.89924 * 179.97438 * 6 4 3 8 8 C 1.36311 * 120.10996 * 180.25142 * 7 6 4 9 9 C 1.40892 * 119.89294 * 359.52696 * 8 7 6 10 10 C 1.41105 * 120.10647 * 180.22920 * 9 8 7 11 11 H 1.08001 * 120.00270 * 206.32649 * 10 9 8 12 12 C 1.40230 * 119.99763 * 26.31818 * 10 9 8 13 13 N 1.30644 * 120.00017 * 13.23916 * 12 10 9 14 14 Si 1.86808 * 119.99807 * 193.23683 * 12 10 9 15 15 H 1.48504 * 109.46924 * 90.00318 * 14 12 10 16 16 H 1.48496 * 109.46772 * 210.00144 * 14 12 10 17 17 H 1.48497 * 109.47095 * 330.00533 * 14 12 10 18 18 C 1.40884 * 119.78913 * 0.49461 * 9 8 7 19 19 C 1.36320 * 119.89479 * 359.73303 * 18 9 8 20 20 C 1.50704 * 109.47131 * 119.99874 * 2 1 3 21 21 N 1.34772 * 119.99790 * 205.00278 * 20 2 1 22 22 O 1.21278 * 119.99851 * 24.99725 * 20 2 1 23 23 C 1.50694 * 109.47038 * 240.00186 * 2 1 3 24 24 C 1.38235 * 120.00212 * 94.14150 * 23 2 1 25 25 C 1.38234 * 119.99613 * 179.78429 * 24 23 2 26 26 C 1.38235 * 120.00297 * 0.44495 * 25 24 23 27 27 C 1.38230 * 119.99925 * 359.80778 * 26 25 24 28 28 C 1.38236 * 119.99993 * 359.97438 * 27 26 25 29 29 H 1.08992 * 109.46912 * 60.00456 * 1 2 3 30 30 H 1.09001 * 109.46772 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46930 * 299.99785 * 1 2 3 32 32 H 0.97004 * 119.99713 * 244.86774 * 3 2 1 33 33 H 1.08006 * 119.93960 * 359.97438 * 7 6 4 34 34 H 1.08001 * 120.05390 * 179.72115 * 8 7 6 35 35 H 0.97005 * 119.99858 * 179.97438 * 13 12 10 36 36 H 1.08006 * 120.05305 * 179.70835 * 18 9 8 37 37 H 1.07999 * 119.94737 * 179.97438 * 19 18 9 38 38 H 0.96994 * 120.00039 * 0.02562 * 21 20 2 39 39 H 0.97000 * 119.99591 * 179.97438 * 21 20 2 40 40 H 1.07994 * 119.99912 * 359.97438 * 24 23 2 41 41 H 1.07999 * 119.99773 * 180.27070 * 25 24 23 42 42 H 1.08008 * 119.99904 * 179.83389 * 26 25 24 43 43 H 1.08005 * 119.99929 * 180.02562 * 27 26 25 44 44 H 1.08008 * 119.99476 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 1.7756 2.1818 1.0567 5 8 1.1511 1.7578 2.0099 6 6 2.2681 3.5736 1.0569 7 6 2.0144 4.4036 2.1556 8 6 2.4627 5.6909 2.1581 9 6 3.1910 6.1829 1.0570 10 6 3.6614 7.5133 1.0570 11 1 3.8271 8.0275 0.1218 12 6 3.9135 8.1678 2.2712 13 7 3.9657 7.4841 3.3833 14 14 4.1749 10.0173 2.2986 15 1 2.8693 10.6990 2.4882 16 1 5.0855 10.3719 3.4168 17 1 4.7777 10.4511 1.0127 18 6 3.4435 5.3441 -0.0464 19 6 2.9871 4.0596 -0.0418 20 6 2.0324 -0.7104 1.2305 21 7 3.2544 -0.4245 1.7220 22 8 1.3371 -1.5393 1.7785 23 6 2.0324 -0.7103 -1.2304 24 6 2.3443 0.0123 -2.3668 25 6 2.8093 -0.6390 -3.4940 26 6 2.9536 -2.0138 -3.4879 27 6 2.6368 -2.7369 -2.3532 28 6 2.1760 -2.0852 -1.2245 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.5163 1.7196 -0.7606 33 1 1.4587 4.0245 3.0006 34 1 2.2625 6.3317 3.0041 35 1 4.1405 7.9369 4.2232 36 1 3.9973 5.7184 -0.8948 37 1 3.1798 3.4160 -0.8874 38 1 3.8103 0.2387 1.2839 39 1 3.5775 -0.8815 2.5142 40 1 2.2276 1.0859 -2.3730 41 1 3.0571 -0.0740 -4.3804 42 1 3.3144 -2.5228 -4.3695 43 1 2.7499 -3.8110 -2.3483 44 1 1.9281 -2.6504 -0.3381 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340137430.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:55 Heat of formation + Delta-G solvation = -48.465194 kcal Electronic energy + Delta-G solvation = -28688.910883 eV Core-core repulsion = 24762.634320 eV Total energy + Delta-G solvation = -3926.276563 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.18243 -40.26313 -39.64549 -38.83561 -36.46252 -35.67838 -34.57594 -33.13598 -31.91704 -31.73530 -31.17366 -30.21972 -27.70970 -25.91256 -24.33121 -23.48388 -23.00499 -22.71094 -21.45435 -20.62293 -19.39966 -19.17226 -18.61645 -18.04728 -17.58782 -17.03551 -16.59018 -16.04476 -15.80839 -15.75287 -15.70796 -15.36006 -15.19069 -15.01797 -14.93974 -14.46966 -14.21867 -13.99828 -13.82205 -13.68695 -13.40064 -13.27869 -13.14276 -13.06525 -12.83460 -12.61442 -12.35843 -12.24496 -12.00284 -11.74521 -11.36393 -11.29447 -11.15966 -10.75538 -10.69756 -10.30571 -9.88093 -9.72689 -9.55029 -9.38969 -8.74643 -6.48599 0.28512 0.42461 0.44185 1.17586 1.38916 1.42566 1.45742 1.53646 2.05073 2.14550 2.17519 2.47397 2.80064 2.82941 3.40344 3.69355 3.75952 3.98803 4.02548 4.08486 4.23437 4.28572 4.35551 4.42474 4.56059 4.57274 4.64950 4.72072 4.94686 5.00055 5.03457 5.08851 5.11679 5.22388 5.25318 5.28822 5.51699 5.55404 5.58973 5.60617 5.77258 5.79385 5.96163 6.03013 6.03535 6.22218 6.27675 6.58503 6.61432 6.78857 6.90939 7.17923 7.36566 8.18568 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.019295 B = 0.002725 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.816402 B =10273.319492 C =11180.370411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.209 3.791 3 N -0.715 5.715 4 C 0.576 3.424 5 O -0.587 6.587 6 C -0.285 4.285 7 C -0.049 4.049 8 C -0.201 4.201 9 C 0.102 3.898 10 C -0.470 4.470 11 H 0.092 0.908 12 C 0.031 3.969 13 N -0.808 5.808 14 Si 0.988 3.012 15 H -0.264 1.264 16 H -0.269 1.269 17 H -0.250 1.250 18 C -0.240 4.240 19 C -0.036 4.036 20 C 0.533 3.467 21 N -0.833 5.833 22 O -0.580 6.580 23 C -0.097 4.097 24 C -0.115 4.115 25 C -0.110 4.110 26 C -0.112 4.112 27 C -0.116 4.116 28 C -0.122 4.122 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.414 0.586 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.293 0.707 36 H 0.119 0.881 37 H 0.138 0.862 38 H 0.408 0.592 39 H 0.406 0.594 40 H 0.137 0.863 41 H 0.154 0.846 42 H 0.153 0.847 43 H 0.143 0.857 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.742 -11.920 -14.241 18.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.119 3.881 3 N -0.373 5.373 4 C 0.370 3.630 5 O -0.469 6.469 6 C -0.290 4.290 7 C -0.069 4.069 8 C -0.220 4.220 9 C 0.098 3.902 10 C -0.498 4.498 11 H 0.110 0.890 12 C -0.187 4.187 13 N -0.432 5.432 14 Si 0.808 3.192 15 H -0.188 1.188 16 H -0.194 1.194 17 H -0.174 1.174 18 C -0.259 4.259 19 C -0.055 4.055 20 C 0.317 3.683 21 N -0.395 5.395 22 O -0.459 6.459 23 C -0.097 4.097 24 C -0.133 4.133 25 C -0.128 4.128 26 C -0.130 4.130 27 C -0.134 4.134 28 C -0.141 4.141 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.256 0.744 33 H 0.105 0.895 34 H 0.121 0.879 35 H 0.104 0.896 36 H 0.137 0.863 37 H 0.156 0.844 38 H 0.238 0.762 39 H 0.237 0.763 40 H 0.155 0.845 41 H 0.172 0.828 42 H 0.171 0.829 43 H 0.161 0.839 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.806 -12.699 -13.105 18.338 hybrid contribution 0.473 1.095 0.885 1.485 sum 2.279 -11.604 -12.220 17.005 Atomic orbital electron populations 1.21973 0.91803 1.03208 1.02913 1.19121 0.95719 0.81696 0.91516 1.46014 1.59182 1.10364 1.21739 1.18459 0.77660 0.85626 0.81249 1.90703 1.43203 1.76432 1.36589 1.19046 1.16584 0.93615 0.99748 1.20525 0.96551 0.93713 0.96074 1.21001 1.03918 0.95598 1.01517 1.18158 0.87148 0.93395 0.91450 1.20173 1.37391 0.97735 0.94468 0.88953 1.26992 0.91727 1.05739 0.94193 1.69791 1.32481 1.40235 1.00688 0.85095 0.79209 0.75238 0.79646 1.18830 1.19398 1.17356 1.20970 1.09165 0.94715 1.01079 1.20698 0.93896 0.95318 0.95579 1.20662 0.81269 0.81184 0.85177 1.43622 1.17995 1.45006 1.32909 1.90667 1.57190 1.36625 1.61446 1.19339 1.02592 0.94226 0.93592 1.21112 0.99172 1.00643 0.92370 1.21497 0.97918 0.95067 0.98323 1.21607 0.98320 0.94410 0.98644 1.21382 0.98343 1.01158 0.92520 1.21073 1.00012 0.93413 0.99594 0.89846 0.90841 0.93196 0.74448 0.89472 0.87856 0.89584 0.86340 0.84441 0.76176 0.76288 0.84496 0.82784 0.82936 0.83920 0.87333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.33 7.99 71.99 0.57 -3.76 16 2 C 0.21 5.98 0.83 2.11 0.00 5.98 16 3 N -0.71 -20.31 4.20 -432.78 -1.82 -22.13 16 4 C 0.58 22.12 6.78 86.72 0.59 22.71 16 5 O -0.59 -27.02 13.63 -3.99 -0.05 -27.07 16 6 C -0.29 -11.95 5.89 -19.93 -0.12 -12.06 16 7 C -0.05 -2.38 9.52 22.25 0.21 -2.17 16 8 C -0.20 -10.30 8.62 22.47 0.19 -10.11 16 9 C 0.10 5.01 5.57 -21.28 -0.12 4.89 16 10 C -0.47 -22.73 9.06 23.46 0.21 -22.52 16 11 H 0.09 4.15 7.88 -2.91 -0.02 4.13 16 12 C 0.03 1.44 5.22 85.35 0.45 1.89 16 13 N -0.81 -39.67 10.79 21.87 0.24 -39.44 16 14 Si 0.99 34.66 29.58 68.60 2.03 36.68 16 15 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 16 H -0.27 -9.12 7.11 99.48 0.71 -8.41 16 17 H -0.25 -8.33 7.11 99.48 0.71 -7.62 16 18 C -0.24 -10.04 9.73 22.47 0.22 -9.82 16 19 C -0.04 -1.33 9.47 22.25 0.21 -1.12 16 20 C 0.53 17.68 4.13 87.66 0.36 18.05 16 21 N -0.83 -23.19 8.48 -173.54 -1.47 -24.66 16 22 O -0.58 -23.08 16.34 -3.02 -0.05 -23.13 16 23 C -0.10 -2.16 4.80 -19.87 -0.10 -2.26 16 24 C -0.11 -1.98 9.05 22.27 0.20 -1.78 16 25 C -0.11 -1.45 10.05 22.27 0.22 -1.22 16 26 C -0.11 -1.41 10.05 22.27 0.22 -1.19 16 27 C -0.12 -1.85 10.05 22.27 0.22 -1.63 16 28 C -0.12 -2.68 9.15 22.27 0.20 -2.47 16 29 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.07 2.20 7.87 -2.39 -0.02 2.18 16 31 H 0.05 1.88 6.53 -2.39 -0.02 1.86 16 32 H 0.41 9.27 4.30 -92.71 -0.40 8.88 16 33 H 0.09 4.34 7.63 -2.91 -0.02 4.31 16 34 H 0.10 5.61 6.11 -2.91 -0.02 5.59 16 35 H 0.29 13.01 8.29 -92.70 -0.77 12.25 16 36 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 37 H 0.14 3.58 6.37 -2.91 -0.02 3.57 16 38 H 0.41 10.14 8.07 -92.71 -0.75 9.39 16 39 H 0.41 10.21 8.93 -92.71 -0.83 9.38 16 40 H 0.14 2.00 6.37 -2.91 -0.02 1.99 16 41 H 0.15 1.19 8.06 -2.91 -0.02 1.16 16 42 H 0.15 1.04 8.06 -2.91 -0.02 1.01 16 43 H 0.14 1.67 8.06 -2.91 -0.02 1.64 16 44 H 0.11 2.77 6.75 -2.91 -0.02 2.75 16 Total: -1.00 -67.90 365.79 1.75 -66.15 By element: Atomic # 1 Polarization: 53.08 SS G_CDS: -0.89 Total: 52.19 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: 3.76 Total: -18.59 kcal Atomic # 7 Polarization: -83.18 SS G_CDS: -3.05 Total: -86.23 kcal Atomic # 8 Polarization: -50.10 SS G_CDS: -0.10 Total: -50.20 kcal Atomic # 14 Polarization: 34.66 SS G_CDS: 2.03 Total: 36.68 kcal Total: -67.90 1.75 -66.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340137430.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.687 kcal (2) G-P(sol) polarization free energy of solvation -67.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds