Wall clock time and date at job start Tue Mar 31 2020 20:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86798 * 119.99817 * 2 1 4 4 H 1.48507 * 109.47182 * 239.99794 * 3 2 1 5 5 H 1.48500 * 109.47117 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47187 * 120.00144 * 3 2 1 7 7 C 1.40235 * 120.00382 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00024 * 186.90695 * 7 2 1 9 9 C 1.41091 * 119.99779 * 6.89842 * 7 2 1 10 10 C 1.40892 * 120.10219 * 212.67688 * 9 7 2 11 11 C 1.36310 * 119.89465 * 180.02562 * 10 9 7 12 12 C 1.40036 * 120.10095 * 0.02562 * 11 10 9 13 13 C 1.47600 * 119.89345 * 179.97438 * 12 11 10 14 14 O 1.21595 * 119.99727 * 329.80403 * 13 12 11 15 15 N 1.34771 * 119.99666 * 149.80042 * 13 12 11 16 16 C 1.46497 * 120.00445 * 7.32749 * 15 13 12 17 17 C 1.52999 * 109.47155 * 99.51141 * 16 15 13 18 18 C 1.50702 * 109.47426 * 180.02562 * 17 16 15 19 19 N 1.34777 * 120.00284 * 179.97438 * 18 17 16 20 20 O 1.21287 * 119.99803 * 0.02562 * 18 17 16 21 21 C 1.39805 * 119.99804 * 187.32893 * 15 13 12 22 22 C 1.38913 * 120.07446 * 186.97692 * 21 15 13 23 23 C 1.38106 * 119.92462 * 179.78724 * 22 21 15 24 24 C 1.38291 * 120.07092 * 0.49054 * 23 22 21 25 25 C 1.38281 * 120.15095 * 359.74041 * 24 23 22 26 26 C 1.38097 * 120.07581 * 0.02562 * 25 24 23 27 27 C 1.40037 * 120.20801 * 0.25362 * 12 11 10 28 28 C 1.36302 * 120.10587 * 359.48254 * 27 12 11 29 29 H 0.96991 * 120.00387 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.05255 * 0.02562 * 10 9 7 31 31 H 1.07999 * 119.94707 * 179.97438 * 11 10 9 32 32 H 1.09001 * 109.47419 * 219.51532 * 16 15 13 33 33 H 1.08999 * 109.47022 * 339.51751 * 16 15 13 34 34 H 1.09001 * 109.47276 * 300.00478 * 17 16 15 35 35 H 1.09004 * 109.47075 * 60.00196 * 17 16 15 36 36 H 0.97006 * 119.99614 * 0.02562 * 19 18 17 37 37 H 0.96992 * 120.00261 * 179.97438 * 19 18 17 38 38 H 1.07996 * 120.03419 * 0.02562 * 22 21 15 39 39 H 1.08000 * 119.95790 * 180.25730 * 23 22 21 40 40 H 1.07999 * 119.91754 * 179.72092 * 24 23 22 41 41 H 1.07997 * 119.96555 * 180.02562 * 25 24 23 42 42 H 1.07999 * 120.03794 * 179.97438 * 26 25 24 43 43 H 1.07997 * 119.94312 * 179.72334 * 27 12 11 44 44 H 1.07994 * 120.05287 * 180.23536 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.0942 1.6964 -1.2125 5 1 1.2753 2.7464 -0.0006 6 1 3.0941 1.6964 1.2125 7 6 2.0077 -1.2144 -0.0005 8 1 3.0818 -1.2178 0.1119 9 6 1.3099 -2.4318 -0.1479 10 6 1.7774 -3.5962 0.4931 11 6 1.1002 -4.7703 0.3474 12 6 -0.0580 -4.8202 -0.4382 13 6 -0.7873 -6.0941 -0.5932 14 8 -0.1844 -7.1491 -0.5483 15 7 -2.1213 -6.0877 -0.7844 16 6 -2.8247 -4.8206 -0.9988 17 6 -3.0755 -4.6234 -2.4951 18 6 -3.7984 -3.3197 -2.7158 19 7 -4.1262 -2.9338 -3.9649 20 8 -4.0845 -2.6171 -1.7694 21 6 -2.8341 -7.2904 -0.7780 22 6 -4.1811 -7.3031 -1.1174 23 6 -4.8811 -8.4936 -1.1144 24 6 -4.2451 -9.6706 -0.7642 25 6 -2.9055 -9.6607 -0.4212 26 6 -2.1984 -8.4745 -0.4268 27 6 -0.5231 -3.6668 -1.0818 28 6 0.1444 -2.4872 -0.9377 29 1 -0.4850 0.8399 -0.0004 30 1 2.6707 -3.5587 1.0988 31 1 1.4580 -5.6634 0.8380 32 1 -3.7777 -4.8400 -0.4701 33 1 -2.2162 -3.9989 -0.6210 34 1 -2.1225 -4.6040 -3.0238 35 1 -3.6839 -5.4451 -2.8730 36 1 -3.8971 -3.4956 -4.7218 37 1 -4.5918 -2.0949 -4.1069 38 1 -4.6793 -6.3837 -1.3871 39 1 -5.9273 -8.5048 -1.3822 40 1 -4.7960 -10.5995 -0.7583 41 1 -2.4117 -10.5817 -0.1486 42 1 -1.1523 -8.4675 -0.1584 43 1 -1.4142 -3.7112 -1.6903 44 1 -0.2172 -1.5973 -1.4314 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340141288.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:21 Heat of formation + Delta-G solvation = 11.777163 kcal Electronic energy + Delta-G solvation = -28971.187361 eV Core-core repulsion = 25047.523102 eV Total energy + Delta-G solvation = -3923.664259 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.86005 -39.33329 -38.34500 -37.14247 -35.81926 -33.89539 -33.68039 -31.77827 -30.72155 -30.28241 -29.51194 -29.02208 -25.96746 -24.61538 -23.04271 -22.36300 -21.12999 -21.04238 -20.44824 -19.29484 -17.63110 -17.47146 -17.32861 -16.75260 -16.41479 -15.95224 -15.75210 -15.26214 -14.97474 -14.47366 -14.13728 -14.02945 -13.83030 -13.46160 -13.34953 -13.10468 -12.97847 -12.68544 -12.56189 -12.27354 -11.95038 -11.78293 -11.62889 -11.52671 -11.26817 -11.06848 -10.96767 -10.89497 -10.52107 -10.14569 -10.00729 -9.87020 -9.71151 -9.45969 -9.42329 -8.82174 -8.70854 -7.74344 -7.69511 -7.47026 -6.95551 -4.65502 1.47314 1.61423 2.18636 2.65186 2.90906 2.92609 2.95625 2.97602 3.06822 3.47855 3.67936 3.76626 4.09230 4.47718 4.76705 4.92499 4.93302 5.08334 5.10900 5.27777 5.39987 5.43261 5.52337 5.62915 5.65248 5.79600 5.86029 6.00901 6.16656 6.23131 6.27778 6.51227 6.57593 6.69846 6.73331 6.79206 6.81839 6.83420 6.94634 7.06500 7.25072 7.38096 7.41302 7.48168 7.69304 7.80129 7.84174 8.02783 8.24777 8.36135 8.60490 8.68397 8.70733 9.95926 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.013743 B = 0.003549 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.895483 B = 7888.380502 C = 9592.529405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.071 3.929 3 Si 0.917 3.083 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.447 4.447 8 H 0.083 0.917 9 C 0.130 3.870 10 C -0.229 4.229 11 C -0.025 4.025 12 C -0.279 4.279 13 C 0.574 3.426 14 O -0.540 6.540 15 N -0.553 5.553 16 C 0.083 3.917 17 C -0.170 4.170 18 C 0.521 3.479 19 N -0.858 5.858 20 O -0.529 6.529 21 C 0.169 3.831 22 C -0.173 4.173 23 C -0.098 4.098 24 C -0.160 4.160 25 C -0.098 4.098 26 C -0.167 4.167 27 C -0.097 4.097 28 C -0.160 4.160 29 H 0.287 0.713 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.147 0.853 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.400 0.600 37 H 0.401 0.599 38 H 0.122 0.878 39 H 0.118 0.882 40 H 0.114 0.886 41 H 0.119 0.881 42 H 0.177 0.823 43 H 0.119 0.881 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.120 -7.147 -6.977 13.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.149 4.149 3 Si 0.741 3.259 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.475 4.475 8 H 0.102 0.898 9 C 0.127 3.873 10 C -0.249 4.249 11 C -0.044 4.044 12 C -0.284 4.284 13 C 0.373 3.627 14 O -0.421 6.421 15 N -0.273 5.273 16 C -0.039 4.039 17 C -0.211 4.211 18 C 0.305 3.695 19 N -0.422 5.422 20 O -0.404 6.404 21 C 0.074 3.926 22 C -0.194 4.194 23 C -0.117 4.117 24 C -0.180 4.180 25 C -0.117 4.117 26 C -0.187 4.187 27 C -0.115 4.115 28 C -0.180 4.180 29 H 0.098 0.902 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.101 0.899 33 H 0.164 0.836 34 H 0.124 0.876 35 H 0.118 0.882 36 H 0.228 0.772 37 H 0.232 0.768 38 H 0.140 0.860 39 H 0.136 0.864 40 H 0.132 0.868 41 H 0.137 0.863 42 H 0.193 0.807 43 H 0.136 0.864 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.045 -7.106 -6.185 13.060 hybrid contribution -0.052 0.884 -0.541 1.038 sum -9.097 -6.222 -6.726 12.911 Atomic orbital electron populations 1.69678 1.07581 1.30088 1.32937 1.26064 0.94970 1.01662 0.92244 0.86212 0.79993 0.79558 0.80174 1.18650 1.20070 1.18728 1.19780 0.95575 0.90243 1.41901 0.89844 1.17833 0.90971 0.92084 0.86395 1.20791 1.03494 0.93821 1.06767 1.20286 0.92345 0.96693 0.95100 1.18747 1.02576 0.91729 1.15322 1.18908 0.79746 0.90202 0.73877 1.90371 1.67281 1.32803 1.51634 1.45548 1.07718 1.05413 1.68593 1.22445 1.00067 0.87590 0.93836 1.22213 1.02645 0.96078 1.00187 1.20424 0.78577 0.87486 0.83040 1.43842 1.63155 1.26746 1.08436 1.90822 1.53441 1.55076 1.41069 1.18124 0.91364 0.86194 0.96966 1.20848 0.93120 0.98833 1.06585 1.20815 0.99190 0.92146 0.99525 1.21025 0.95288 0.97856 1.03793 1.21124 0.94031 0.97835 0.98699 1.22588 1.04330 0.90515 1.01238 1.21313 0.98069 0.92878 0.99284 1.21054 0.98627 0.96396 1.01891 0.90168 0.88131 0.88234 0.89865 0.83601 0.87618 0.88179 0.77172 0.76810 0.86017 0.86360 0.86762 0.86276 0.80668 0.86393 0.86022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.93 10.90 55.56 0.61 -18.32 16 2 C 0.07 1.65 5.30 -17.31 -0.09 1.56 16 3 Si 0.92 17.45 29.57 -169.99 -5.03 12.43 16 4 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 5 H -0.28 -5.15 7.11 56.52 0.40 -4.75 16 6 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 7 C -0.45 -10.98 9.04 -37.75 -0.34 -11.32 16 8 H 0.08 1.95 7.86 -52.49 -0.41 1.54 16 9 C 0.13 3.25 5.52 -106.80 -0.59 2.66 16 10 C -0.23 -5.37 9.73 -39.27 -0.38 -5.75 16 11 C -0.03 -0.57 9.52 -39.60 -0.38 -0.94 16 12 C -0.28 -6.15 5.61 -104.73 -0.59 -6.73 16 13 C 0.57 11.82 7.35 -12.44 -0.09 11.73 16 14 O -0.54 -11.83 13.22 5.28 0.07 -11.76 16 15 N -0.55 -9.72 2.72 -114.60 -0.31 -10.03 16 16 C 0.08 1.33 3.51 -4.04 -0.01 1.32 16 17 C -0.17 -2.17 4.79 -27.88 -0.13 -2.31 16 18 C 0.52 6.94 7.91 -10.98 -0.09 6.85 16 19 N -0.86 -7.63 8.87 31.22 0.28 -7.36 16 20 O -0.53 -9.47 16.82 5.55 0.09 -9.37 16 21 C 0.17 2.79 6.44 -83.72 -0.54 2.25 16 22 C -0.17 -2.37 8.51 -39.38 -0.34 -2.71 16 23 C -0.10 -1.19 10.04 -39.61 -0.40 -1.59 16 24 C -0.16 -1.95 10.04 -39.55 -0.40 -2.35 16 25 C -0.10 -1.35 10.04 -39.62 -0.40 -1.75 16 26 C -0.17 -2.79 8.97 -39.38 -0.35 -3.15 16 27 C -0.10 -2.10 7.41 -39.60 -0.29 -2.39 16 28 C -0.16 -3.86 8.57 -39.27 -0.34 -4.20 16 29 H 0.29 6.41 8.29 -40.82 -0.34 6.07 16 30 H 0.10 2.20 8.06 -52.49 -0.42 1.77 16 31 H 0.10 2.12 7.91 -52.49 -0.42 1.70 16 32 H 0.08 1.28 7.05 -51.93 -0.37 0.91 16 33 H 0.15 2.78 3.83 -53.42 -0.20 2.57 16 34 H 0.11 1.35 7.15 -51.93 -0.37 0.98 16 35 H 0.10 1.05 6.57 -51.93 -0.34 0.71 16 36 H 0.40 2.32 8.83 -40.82 -0.36 1.96 16 37 H 0.40 3.22 8.93 -40.82 -0.36 2.86 16 38 H 0.12 1.48 5.60 -52.49 -0.29 1.19 16 39 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.11 1.10 8.06 -52.49 -0.42 0.67 16 41 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 42 H 0.18 3.31 4.73 -55.08 -0.26 3.04 16 43 H 0.12 2.23 2.53 -52.49 -0.13 2.10 16 44 H 0.12 3.03 6.38 -52.49 -0.33 2.70 16 LS Contribution 359.63 15.07 5.42 5.42 Total: -1.00 -29.94 359.63 -9.30 -39.24 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: -4.68 Total: 18.58 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -5.75 Total: -18.83 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.57 Total: -35.70 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: 0.16 Total: -21.13 kcal Atomic # 14 Polarization: 17.45 SS G_CDS: -5.03 Total: 12.43 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.94 -9.30 -39.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340141288.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.016 kcal (2) G-P(sol) polarization free energy of solvation -29.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds