Wall clock time and date at job start Tue Mar 31 2020 20:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86798 * 119.99817 * 2 1 4 4 H 1.48507 * 109.47182 * 239.99794 * 3 2 1 5 5 H 1.48500 * 109.47117 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47187 * 120.00144 * 3 2 1 7 7 C 1.40235 * 120.00382 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00024 * 186.90695 * 7 2 1 9 9 C 1.41091 * 119.99779 * 6.89842 * 7 2 1 10 10 C 1.40892 * 120.10219 * 212.67688 * 9 7 2 11 11 C 1.36310 * 119.89465 * 180.02562 * 10 9 7 12 12 C 1.40036 * 120.10095 * 0.02562 * 11 10 9 13 13 C 1.47600 * 119.89345 * 179.97438 * 12 11 10 14 14 O 1.21595 * 119.99727 * 329.80403 * 13 12 11 15 15 N 1.34771 * 119.99666 * 149.80042 * 13 12 11 16 16 C 1.46497 * 120.00445 * 7.32749 * 15 13 12 17 17 C 1.52999 * 109.47155 * 99.51141 * 16 15 13 18 18 C 1.50702 * 109.47426 * 180.02562 * 17 16 15 19 19 N 1.34777 * 120.00284 * 179.97438 * 18 17 16 20 20 O 1.21287 * 119.99803 * 0.02562 * 18 17 16 21 21 C 1.39805 * 119.99804 * 187.32893 * 15 13 12 22 22 C 1.38913 * 120.07446 * 186.97692 * 21 15 13 23 23 C 1.38106 * 119.92462 * 179.78724 * 22 21 15 24 24 C 1.38291 * 120.07092 * 0.49054 * 23 22 21 25 25 C 1.38281 * 120.15095 * 359.74041 * 24 23 22 26 26 C 1.38097 * 120.07581 * 0.02562 * 25 24 23 27 27 C 1.40037 * 120.20801 * 0.25362 * 12 11 10 28 28 C 1.36302 * 120.10587 * 359.48254 * 27 12 11 29 29 H 0.96991 * 120.00387 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.05255 * 0.02562 * 10 9 7 31 31 H 1.07999 * 119.94707 * 179.97438 * 11 10 9 32 32 H 1.09001 * 109.47419 * 219.51532 * 16 15 13 33 33 H 1.08999 * 109.47022 * 339.51751 * 16 15 13 34 34 H 1.09001 * 109.47276 * 300.00478 * 17 16 15 35 35 H 1.09004 * 109.47075 * 60.00196 * 17 16 15 36 36 H 0.97006 * 119.99614 * 0.02562 * 19 18 17 37 37 H 0.96992 * 120.00261 * 179.97438 * 19 18 17 38 38 H 1.07996 * 120.03419 * 0.02562 * 22 21 15 39 39 H 1.08000 * 119.95790 * 180.25730 * 23 22 21 40 40 H 1.07999 * 119.91754 * 179.72092 * 24 23 22 41 41 H 1.07997 * 119.96555 * 180.02562 * 25 24 23 42 42 H 1.07999 * 120.03794 * 179.97438 * 26 25 24 43 43 H 1.07997 * 119.94312 * 179.72334 * 27 12 11 44 44 H 1.07994 * 120.05287 * 180.23536 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.0942 1.6964 -1.2125 5 1 1.2753 2.7464 -0.0006 6 1 3.0941 1.6964 1.2125 7 6 2.0077 -1.2144 -0.0005 8 1 3.0818 -1.2178 0.1119 9 6 1.3099 -2.4318 -0.1479 10 6 1.7774 -3.5962 0.4931 11 6 1.1002 -4.7703 0.3474 12 6 -0.0580 -4.8202 -0.4382 13 6 -0.7873 -6.0941 -0.5932 14 8 -0.1844 -7.1491 -0.5483 15 7 -2.1213 -6.0877 -0.7844 16 6 -2.8247 -4.8206 -0.9988 17 6 -3.0755 -4.6234 -2.4951 18 6 -3.7984 -3.3197 -2.7158 19 7 -4.1262 -2.9338 -3.9649 20 8 -4.0845 -2.6171 -1.7694 21 6 -2.8341 -7.2904 -0.7780 22 6 -4.1811 -7.3031 -1.1174 23 6 -4.8811 -8.4936 -1.1144 24 6 -4.2451 -9.6706 -0.7642 25 6 -2.9055 -9.6607 -0.4212 26 6 -2.1984 -8.4745 -0.4268 27 6 -0.5231 -3.6668 -1.0818 28 6 0.1444 -2.4872 -0.9377 29 1 -0.4850 0.8399 -0.0004 30 1 2.6707 -3.5587 1.0988 31 1 1.4580 -5.6634 0.8380 32 1 -3.7777 -4.8400 -0.4701 33 1 -2.2162 -3.9989 -0.6210 34 1 -2.1225 -4.6040 -3.0238 35 1 -3.6839 -5.4451 -2.8730 36 1 -3.8971 -3.4956 -4.7218 37 1 -4.5918 -2.0949 -4.1069 38 1 -4.6793 -6.3837 -1.3871 39 1 -5.9273 -8.5048 -1.3822 40 1 -4.7960 -10.5995 -0.7583 41 1 -2.4117 -10.5817 -0.1486 42 1 -1.1523 -8.4675 -0.1584 43 1 -1.4142 -3.7112 -1.6903 44 1 -0.2172 -1.5973 -1.4314 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340141288.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:20 Heat of formation + Delta-G solvation = -6.455337 kcal Electronic energy + Delta-G solvation = -28971.977981 eV Core-core repulsion = 25047.523102 eV Total energy + Delta-G solvation = -3924.454879 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.25006 -40.46885 -39.75740 -38.74599 -37.20931 -35.64820 -34.66937 -33.09437 -32.04056 -31.70165 -31.18959 -30.34148 -27.68981 -25.85298 -24.45837 -23.69623 -22.75978 -22.46482 -21.53016 -20.75752 -19.41412 -18.63072 -18.34984 -18.14935 -17.51098 -17.46593 -17.10998 -16.72489 -16.32845 -15.82790 -15.59194 -15.30904 -15.07316 -14.89496 -14.70117 -14.47648 -14.37333 -14.20850 -13.91534 -13.57011 -13.48714 -13.42388 -13.07689 -12.85440 -12.74600 -12.64061 -12.44937 -12.14540 -11.94578 -11.71878 -11.35824 -11.20770 -11.16460 -11.02965 -10.63845 -10.32735 -9.81067 -9.53442 -9.39760 -8.84141 -8.70753 -6.52223 0.17416 0.52791 0.64490 1.07211 1.38592 1.42672 1.50993 1.60148 1.74129 1.92232 2.17146 2.62077 2.73766 2.99406 3.55060 3.62124 3.68644 3.76882 4.06583 4.13827 4.17763 4.25177 4.35424 4.40549 4.41089 4.49037 4.59217 4.64430 4.74726 4.88942 4.93469 5.02108 5.09756 5.19821 5.24094 5.35987 5.54744 5.57174 5.68691 5.70968 5.74964 5.90313 5.91593 5.97028 6.19095 6.22580 6.33827 6.43459 6.52362 6.77384 6.85013 7.13421 7.34548 8.22755 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.013743 B = 0.003549 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.895483 B = 7888.380502 C = 9592.529405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.033 3.967 3 Si 0.989 3.011 4 H -0.256 1.256 5 H -0.268 1.268 6 H -0.259 1.259 7 C -0.479 4.479 8 H 0.086 0.914 9 C 0.104 3.896 10 C -0.241 4.241 11 C -0.035 4.035 12 C -0.285 4.285 13 C 0.572 3.428 14 O -0.559 6.559 15 N -0.546 5.546 16 C 0.084 3.916 17 C -0.161 4.161 18 C 0.521 3.479 19 N -0.833 5.833 20 O -0.581 6.581 21 C 0.138 3.862 22 C -0.169 4.169 23 C -0.092 4.092 24 C -0.150 4.150 25 C -0.103 4.103 26 C -0.194 4.194 27 C -0.085 4.085 28 C -0.182 4.182 29 H 0.293 0.707 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.107 0.893 35 H 0.132 0.868 36 H 0.419 0.581 37 H 0.409 0.591 38 H 0.138 0.862 39 H 0.156 0.844 40 H 0.149 0.851 41 H 0.136 0.864 42 H 0.148 0.852 43 H 0.145 0.855 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.527 -8.215 -8.455 16.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.184 4.184 3 Si 0.809 3.191 4 H -0.180 1.180 5 H -0.192 1.192 6 H -0.184 1.184 7 C -0.508 4.508 8 H 0.104 0.896 9 C 0.101 3.899 10 C -0.260 4.260 11 C -0.054 4.054 12 C -0.289 4.289 13 C 0.369 3.631 14 O -0.442 6.442 15 N -0.265 5.265 16 C -0.038 4.038 17 C -0.202 4.202 18 C 0.305 3.695 19 N -0.398 5.398 20 O -0.461 6.461 21 C 0.044 3.956 22 C -0.189 4.189 23 C -0.110 4.110 24 C -0.169 4.169 25 C -0.121 4.121 26 C -0.214 4.214 27 C -0.103 4.103 28 C -0.201 4.201 29 H 0.104 0.896 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.110 0.890 33 H 0.131 0.869 34 H 0.125 0.875 35 H 0.149 0.851 36 H 0.250 0.750 37 H 0.241 0.759 38 H 0.156 0.844 39 H 0.174 0.826 40 H 0.167 0.833 41 H 0.154 0.846 42 H 0.164 0.836 43 H 0.162 0.838 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.485 -8.211 -7.724 16.093 hybrid contribution 0.522 0.968 -0.104 1.104 sum -10.963 -7.244 -7.828 15.295 Atomic orbital electron populations 1.69749 1.09011 1.31224 1.33583 1.26906 0.95657 1.04699 0.91128 0.85137 0.78639 0.75066 0.80268 1.18029 1.19194 1.18350 1.20039 0.95915 0.91116 1.43680 0.89597 1.18166 0.91760 0.92897 0.87050 1.20941 1.04078 0.93879 1.07148 1.20473 0.92737 0.96778 0.95403 1.19060 1.02494 0.92782 1.14544 1.18663 0.80986 0.89177 0.74298 1.90396 1.68198 1.32992 1.52571 1.45358 1.06640 1.06572 1.67956 1.22337 0.99360 0.85808 0.96280 1.22114 1.03275 0.97087 0.97696 1.20476 0.78244 0.87167 0.83607 1.43629 1.61486 1.27024 1.07626 1.90814 1.55860 1.56487 1.42941 1.18343 0.92614 0.85317 0.99317 1.21082 0.91740 1.00431 1.05647 1.21290 1.00781 0.91184 0.97774 1.21457 0.94472 0.99471 1.01458 1.21354 0.95043 0.97341 0.98403 1.22413 1.03585 0.92186 1.03214 1.21586 0.98120 0.91896 0.98681 1.21013 0.99385 0.96801 1.02906 0.89643 0.87302 0.87393 0.89017 0.86925 0.87524 0.85059 0.74989 0.75896 0.84416 0.82648 0.83323 0.84569 0.83559 0.83775 0.87352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.73 10.90 21.87 0.24 -40.49 16 2 C 0.03 1.59 5.30 85.35 0.45 2.04 16 3 Si 0.99 36.10 29.57 68.60 2.03 38.13 16 4 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 5 H -0.27 -9.31 7.11 99.48 0.71 -8.60 16 6 H -0.26 -9.24 7.11 99.48 0.71 -8.54 16 7 C -0.48 -24.53 9.04 23.46 0.21 -24.32 16 8 H 0.09 4.17 7.86 -2.91 -0.02 4.15 16 9 C 0.10 5.46 5.52 -21.28 -0.12 5.34 16 10 C -0.24 -11.85 9.73 22.47 0.22 -11.63 16 11 C -0.03 -1.64 9.52 22.26 0.21 -1.43 16 12 C -0.28 -12.98 5.61 -19.93 -0.11 -13.10 16 13 C 0.57 24.17 7.35 86.72 0.64 24.81 16 14 O -0.56 -25.35 13.22 -4.02 -0.05 -25.41 16 15 N -0.55 -19.16 2.72 -634.73 -1.72 -20.88 16 16 C 0.08 2.67 3.51 86.38 0.30 2.98 16 17 C -0.16 -3.84 4.79 29.85 0.14 -3.70 16 18 C 0.52 13.16 7.91 87.66 0.69 13.85 16 19 N -0.83 -12.90 8.87 -173.52 -1.54 -14.44 16 20 O -0.58 -20.77 16.82 -3.05 -0.05 -20.82 16 21 C 0.14 4.41 6.44 38.19 0.25 4.65 16 22 C -0.17 -4.10 8.51 22.40 0.19 -3.90 16 23 C -0.09 -1.80 10.04 22.25 0.22 -1.57 16 24 C -0.15 -3.01 10.04 22.29 0.22 -2.78 16 25 C -0.10 -2.61 10.04 22.25 0.22 -2.39 16 26 C -0.19 -6.43 8.97 22.40 0.20 -6.23 16 27 C -0.08 -3.81 7.41 22.25 0.16 -3.64 16 28 C -0.18 -9.18 8.57 22.47 0.19 -8.99 16 29 H 0.29 13.40 8.29 -92.71 -0.77 12.63 16 30 H 0.11 4.99 8.06 -2.91 -0.02 4.96 16 31 H 0.11 4.79 7.91 -2.91 -0.02 4.77 16 32 H 0.09 2.75 7.05 -2.39 -0.02 2.74 16 33 H 0.11 4.41 3.83 -3.79 -0.01 4.39 16 34 H 0.11 2.58 7.15 -2.39 -0.02 2.56 16 35 H 0.13 2.32 6.57 -2.38 -0.02 2.31 16 36 H 0.42 3.54 8.83 -92.70 -0.82 2.72 16 37 H 0.41 5.70 8.93 -92.71 -0.83 4.87 16 38 H 0.14 2.85 5.60 -2.91 -0.02 2.83 16 39 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 40 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 41 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16 42 H 0.15 5.73 4.73 -44.05 -0.21 5.52 16 43 H 0.15 5.57 2.53 -2.91 -0.01 5.57 16 44 H 0.11 5.70 6.38 -2.91 -0.02 5.68 16 Total: -1.00 -69.42 359.63 2.46 -66.96 By element: Atomic # 1 Polarization: 47.71 SS G_CDS: -0.75 Total: 46.96 kcal Atomic # 6 Polarization: -34.31 SS G_CDS: 4.31 Total: -30.01 kcal Atomic # 7 Polarization: -72.79 SS G_CDS: -3.03 Total: -75.81 kcal Atomic # 8 Polarization: -46.13 SS G_CDS: -0.10 Total: -46.23 kcal Atomic # 14 Polarization: 36.10 SS G_CDS: 2.03 Total: 38.13 kcal Total: -69.42 2.46 -66.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340141288.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.504 kcal (2) G-P(sol) polarization free energy of solvation -69.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds