Wall clock time and date at job start Tue Mar 31 2020 20:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30637 * 1 3 3 Si 1.86800 * 120.00216 * 2 1 4 4 H 1.48498 * 109.47581 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47122 * 300.00275 * 3 2 1 6 6 H 1.48500 * 109.46951 * 59.99490 * 3 2 1 7 7 C 1.40228 * 120.00075 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 197.88013 * 7 2 1 9 9 C 1.41105 * 120.00102 * 17.87841 * 7 2 1 10 10 C 1.40894 * 120.10388 * 204.63626 * 9 7 2 11 11 C 1.36315 * 119.88993 * 180.02562 * 10 9 7 12 12 C 1.40010 * 120.11174 * 0.02562 * 11 10 9 13 13 C 1.47634 * 119.89970 * 179.97438 * 12 11 10 14 14 O 1.21587 * 119.99987 * 0.02562 * 13 12 11 15 15 N 1.34780 * 120.00309 * 179.97438 * 13 12 11 16 16 C 1.46495 * 120.00063 * 179.97438 * 15 13 12 17 17 C 1.53007 * 109.47200 * 180.02562 * 16 15 13 18 18 C 1.50695 * 109.47176 * 179.97438 * 17 16 15 19 19 C 1.38378 * 119.92744 * 270.01839 * 18 17 16 20 20 C 1.38340 * 120.29315 * 180.02562 * 19 18 17 21 21 C 1.37983 * 120.14164 * 359.69990 * 20 19 18 22 22 C 1.39558 * 119.85504 * 0.53400 * 21 20 19 23 23 C 1.47844 * 120.14500 * 179.76921 * 22 21 20 24 24 N 1.34779 * 120.00009 * 359.71841 * 23 22 21 25 25 O 1.21550 * 119.99953 * 179.72145 * 23 22 21 26 26 C 1.37937 * 119.92592 * 89.99957 * 18 17 16 27 27 C 1.40014 * 120.20421 * 0.23342 * 12 11 10 28 28 C 1.36315 * 120.10780 * 359.48317 * 27 12 11 29 29 H 0.97002 * 120.00386 * 0.02562 * 1 2 3 30 30 H 1.07996 * 120.05232 * 359.97438 * 10 9 7 31 31 H 1.08000 * 119.94104 * 179.97438 * 11 10 9 32 32 H 0.96997 * 119.99643 * 0.02562 * 15 13 12 33 33 H 1.08996 * 109.47310 * 60.00292 * 16 15 13 34 34 H 1.09003 * 109.47638 * 299.99910 * 16 15 13 35 35 H 1.08996 * 109.46873 * 59.99874 * 17 16 15 36 36 H 1.09003 * 109.46629 * 300.00378 * 17 16 15 37 37 H 1.07995 * 119.85326 * 0.02562 * 19 18 17 38 38 H 1.07998 * 119.93019 * 179.97438 * 20 19 18 39 39 H 1.07999 * 120.07264 * 180.27352 * 21 20 19 40 40 H 0.96993 * 119.99763 * 359.97438 * 24 23 22 41 41 H 0.96998 * 119.99705 * 179.73015 * 24 23 22 42 42 H 1.08004 * 120.07791 * 0.02562 * 26 18 17 43 43 H 1.08006 * 119.94775 * 179.72250 * 27 12 11 44 44 H 1.08010 * 120.05688 * 180.25459 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.7004 1.3464 0.0006 5 1 1.8817 2.3965 -1.2125 6 1 1.8816 2.3964 1.2125 7 6 2.0075 -1.2144 -0.0005 8 1 3.0484 -1.2370 0.2866 9 6 1.3531 -2.4068 -0.3762 10 6 1.8267 -3.6495 0.0890 11 6 1.1915 -4.7987 -0.2771 12 6 0.0706 -4.7456 -1.1144 13 6 -0.6134 -5.9932 -1.5084 14 8 -0.2035 -7.0646 -1.1055 15 7 -1.6930 -5.9445 -2.3139 16 6 -2.3713 -7.1825 -2.7053 17 6 -3.5556 -6.8495 -3.6150 18 6 -4.2530 -8.1231 -4.0182 19 6 -3.8590 -8.7934 -5.1628 20 6 -4.4944 -9.9629 -5.5402 21 6 -5.5221 -10.4718 -4.7729 22 6 -5.9276 -9.7981 -3.6200 23 6 -7.0315 -10.3350 -2.7959 24 7 -7.6523 -11.4743 -3.1606 25 8 -7.3792 -9.7487 -1.7895 26 6 -5.2825 -8.6183 -3.2451 27 6 -0.4004 -3.5134 -1.5836 28 6 0.2247 -2.3584 -1.2183 29 1 -0.4851 0.8400 -0.0004 30 1 2.6920 -3.6916 0.7338 31 1 1.5540 -5.7518 0.0787 32 1 -2.0202 -5.0897 -2.6350 33 1 -2.7307 -7.6972 -1.8143 34 1 -1.6728 -7.8263 -3.2399 35 1 -3.1958 -6.3350 -4.5060 36 1 -4.2542 -6.2056 -3.0808 37 1 -3.0520 -8.4019 -5.7642 38 1 -4.1824 -10.4811 -6.4350 39 1 -6.0143 -11.3873 -5.0662 40 1 -7.3750 -11.9419 -3.9639 41 1 -8.3739 -11.8286 -2.6178 42 1 -5.5892 -8.0941 -2.3519 43 1 -1.2628 -3.4776 -2.2329 44 1 -0.1419 -1.4080 -1.5774 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340141531.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:33 Heat of formation + Delta-G solvation = -69.383970 kcal Electronic energy + Delta-G solvation = -26475.115979 eV Core-core repulsion = 22547.932309 eV Total energy + Delta-G solvation = -3927.183670 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.21729 -40.75575 -39.47618 -38.88531 -36.45254 -35.67138 -34.97361 -33.58907 -32.00375 -31.99212 -31.29664 -29.53175 -27.58488 -25.22419 -24.82001 -23.40861 -22.79759 -22.49892 -21.46982 -20.99171 -19.36703 -19.04817 -18.39245 -17.79280 -17.31345 -16.98626 -16.87340 -16.57934 -15.88863 -15.79348 -15.73750 -15.65691 -15.47723 -15.03156 -14.74338 -14.48139 -14.45298 -13.98767 -13.94912 -13.75671 -13.60007 -13.21591 -12.85293 -12.77293 -12.74300 -12.61882 -12.37990 -12.31783 -12.01123 -11.75868 -11.37205 -11.22776 -11.12303 -10.78504 -10.74067 -10.09766 -9.93903 -9.77987 -9.57104 -9.40528 -8.79480 -6.48157 -0.16537 0.34295 0.43914 1.15334 1.38984 1.42388 1.55920 1.80226 2.12217 2.18075 2.36696 2.50916 2.78534 2.85390 3.69206 3.75152 3.81484 3.89792 4.00610 4.12077 4.18225 4.30743 4.33086 4.36383 4.44684 4.50805 4.55758 4.77762 4.92581 4.95219 4.99493 5.03374 5.08751 5.16314 5.28064 5.30391 5.40945 5.54513 5.57321 5.59807 5.81437 5.82522 5.92389 5.94704 5.99724 6.22939 6.38466 6.54188 6.71113 6.77331 6.89233 7.25023 7.43736 8.15983 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.021862 B = 0.001741 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.431099 B =16077.161523 C =16309.866848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.038 3.962 3 Si 0.988 3.012 4 H -0.257 1.257 5 H -0.259 1.259 6 H -0.265 1.265 7 C -0.472 4.472 8 H 0.085 0.915 9 C 0.100 3.900 10 C -0.253 4.253 11 C -0.035 4.035 12 C -0.294 4.294 13 C 0.570 3.430 14 O -0.608 6.608 15 N -0.724 5.724 16 C 0.131 3.869 17 C -0.083 4.083 18 C -0.095 4.095 19 C -0.087 4.087 20 C -0.122 4.122 21 C -0.078 4.078 22 C -0.158 4.158 23 C 0.557 3.443 24 N -0.827 5.827 25 O -0.594 6.594 26 C -0.076 4.076 27 C -0.053 4.053 28 C -0.198 4.198 29 H 0.297 0.703 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.410 0.590 33 H 0.044 0.956 34 H 0.062 0.938 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.148 0.852 38 H 0.164 0.836 39 H 0.163 0.837 40 H 0.418 0.582 41 H 0.412 0.588 42 H 0.114 0.886 43 H 0.127 0.873 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.344 -14.904 -15.868 25.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.181 4.181 3 Si 0.808 3.192 4 H -0.180 1.180 5 H -0.183 1.183 6 H -0.189 1.189 7 C -0.500 4.500 8 H 0.103 0.897 9 C 0.096 3.904 10 C -0.272 4.272 11 C -0.054 4.054 12 C -0.298 4.298 13 C 0.364 3.636 14 O -0.493 6.493 15 N -0.377 5.377 16 C 0.008 3.992 17 C -0.120 4.120 18 C -0.096 4.096 19 C -0.105 4.105 20 C -0.140 4.140 21 C -0.097 4.097 22 C -0.161 4.161 23 C 0.344 3.656 24 N -0.392 5.392 25 O -0.476 6.476 26 C -0.095 4.095 27 C -0.072 4.072 28 C -0.217 4.217 29 H 0.108 0.892 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.247 0.753 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.123 0.877 36 H 0.103 0.897 37 H 0.166 0.834 38 H 0.181 0.819 39 H 0.181 0.819 40 H 0.251 0.749 41 H 0.245 0.755 42 H 0.132 0.868 43 H 0.144 0.856 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -13.419 -15.055 -15.010 25.140 hybrid contribution 0.000 0.692 0.435 0.817 sum -13.419 -14.363 -14.575 24.471 Atomic orbital electron populations 1.69762 1.09245 1.31603 1.31539 1.26932 0.95550 1.04845 0.90815 0.85063 0.79452 0.75468 0.79258 1.18042 1.18329 1.18936 1.20135 0.98750 0.92219 1.38858 0.89705 1.18166 0.91344 0.92866 0.87984 1.20846 1.05187 0.92741 1.08432 1.20518 0.93607 0.97027 0.94225 1.19176 1.04386 0.92220 1.14047 1.18431 0.79618 0.88498 0.77081 1.90616 1.67850 1.32549 1.58298 1.45742 1.30236 1.10635 1.51073 1.21244 0.93778 0.86365 0.97859 1.20741 0.95537 0.95171 1.00565 1.19686 0.96427 0.97377 0.96117 1.21663 0.98831 0.94906 0.95089 1.21520 0.95654 0.95904 1.00925 1.21657 0.96438 0.99517 0.92074 1.19919 0.99258 0.98286 0.98621 1.18586 0.82062 0.81072 0.83854 1.43548 1.39029 1.25336 1.31257 1.90813 1.67237 1.60986 1.28581 1.21205 0.94680 0.94968 0.98626 1.20744 0.97794 0.91359 0.97265 1.21018 1.00476 0.97465 1.02719 0.89157 0.87849 0.88069 0.75273 0.93734 0.92007 0.87719 0.89733 0.83432 0.81873 0.81925 0.74891 0.75537 0.86818 0.85561 0.86712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.18 10.95 21.87 0.24 -37.94 16 2 C 0.04 1.75 5.13 85.35 0.44 2.18 16 3 Si 0.99 34.78 29.60 68.60 2.03 36.81 16 4 H -0.26 -8.96 7.11 99.48 0.71 -8.25 16 5 H -0.26 -8.66 7.11 99.48 0.71 -7.95 16 6 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 7 C -0.47 -23.96 9.04 23.46 0.21 -23.75 16 8 H 0.08 4.14 7.91 -2.91 -0.02 4.12 16 9 C 0.10 5.21 5.57 -21.28 -0.12 5.09 16 10 C -0.25 -12.70 9.73 22.47 0.22 -12.48 16 11 C -0.03 -1.69 9.52 22.25 0.21 -1.48 16 12 C -0.29 -13.56 5.89 -19.94 -0.12 -13.67 16 13 C 0.57 24.42 7.76 86.72 0.67 25.10 16 14 O -0.61 -29.88 16.32 -3.99 -0.07 -29.95 16 15 N -0.72 -23.21 5.50 -466.16 -2.57 -25.78 16 16 C 0.13 3.55 5.66 86.38 0.49 4.03 16 17 C -0.08 -1.55 5.45 29.85 0.16 -1.39 16 18 C -0.10 -1.76 5.13 -19.90 -0.10 -1.86 16 19 C -0.09 -1.17 9.69 22.33 0.22 -0.95 16 20 C -0.12 -1.18 10.03 22.23 0.22 -0.96 16 21 C -0.08 -0.80 9.54 22.53 0.21 -0.59 16 22 C -0.16 -2.87 5.87 -20.09 -0.12 -2.98 16 23 C 0.56 11.30 8.05 86.79 0.70 12.00 16 24 N -0.83 -7.69 8.83 -175.60 -1.55 -9.24 16 25 O -0.59 -18.30 17.18 -3.87 -0.07 -18.37 16 26 C -0.08 -1.66 9.24 22.53 0.21 -1.45 16 27 C -0.05 -2.30 9.47 22.25 0.21 -2.09 16 28 C -0.20 -9.74 8.64 22.47 0.19 -9.55 16 29 H 0.30 12.57 8.29 -92.71 -0.77 11.80 16 30 H 0.10 4.89 8.06 -2.91 -0.02 4.87 16 31 H 0.10 4.84 7.63 -2.91 -0.02 4.81 16 32 H 0.41 11.03 6.47 -92.71 -0.60 10.43 16 33 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.10 1.52 8.08 -2.39 -0.02 1.50 16 36 H 0.08 1.57 8.08 -2.39 -0.02 1.55 16 37 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 38 H 0.16 0.52 8.06 -2.91 -0.02 0.50 16 39 H 0.16 0.29 6.41 -2.91 -0.02 0.27 16 40 H 0.42 0.71 6.86 -92.71 -0.64 0.07 16 41 H 0.41 3.01 8.93 -92.71 -0.83 2.18 16 42 H 0.11 2.93 7.65 -2.91 -0.02 2.91 16 43 H 0.13 4.41 6.37 -2.91 -0.02 4.39 16 44 H 0.12 5.71 6.16 -2.91 -0.02 5.70 16 Total: -1.00 -75.14 378.45 0.96 -74.18 By element: Atomic # 1 Polarization: 36.07 SS G_CDS: -0.98 Total: 35.08 kcal Atomic # 6 Polarization: -28.72 SS G_CDS: 3.92 Total: -24.80 kcal Atomic # 7 Polarization: -69.08 SS G_CDS: -3.88 Total: -72.96 kcal Atomic # 8 Polarization: -48.19 SS G_CDS: -0.13 Total: -48.32 kcal Atomic # 14 Polarization: 34.78 SS G_CDS: 2.03 Total: 36.81 kcal Total: -75.14 0.96 -74.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340141531.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.799 kcal (2) G-P(sol) polarization free energy of solvation -75.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds