Wall clock time and date at job start Tue Mar 31 2020 20:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86800 * 120.00410 * 2 1 4 4 H 1.48506 * 109.46938 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47230 * 119.99862 * 3 2 1 6 6 H 1.48491 * 109.47492 * 240.00088 * 3 2 1 7 7 C 1.39942 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99900 * 197.38751 * 7 2 1 9 9 C 1.41435 * 119.99482 * 17.39090 * 7 2 1 10 10 C 1.40790 * 120.17208 * 204.79448 * 9 7 2 11 11 C 1.37717 * 120.03989 * 179.76254 * 10 9 7 12 12 C 1.38372 * 120.40778 * 0.51580 * 11 10 9 13 13 C 1.39881 * 120.36205 * 359.73797 * 12 11 10 14 14 C 1.47882 * 120.02977 * 180.02562 * 13 12 11 15 15 O 1.21549 * 120.00384 * 179.97438 * 14 13 12 16 16 N 1.34778 * 119.99665 * 359.97368 * 14 13 12 17 17 C 1.46500 * 120.00021 * 180.02562 * 16 14 13 18 18 H 1.08998 * 110.43680 * 36.08834 * 17 16 14 19 19 C 1.54821 * 110.48844 * 273.54959 * 17 16 14 20 20 C 1.54995 * 102.09058 * 262.20434 * 19 17 16 21 21 O 1.44382 * 103.49061 * 322.97581 * 20 19 17 22 22 C 1.43742 * 106.97719 * 40.06042 * 21 20 19 23 23 H 1.09001 * 109.88150 * 92.91283 * 22 21 20 24 24 C 1.50703 * 109.88231 * 214.06457 * 22 21 20 25 25 C 1.38668 * 120.41942 * 217.83269 * 24 22 21 26 26 C 1.38630 * 118.42116 * 180.02562 * 25 24 22 27 27 C 1.38225 * 119.15716 * 359.97438 * 26 25 24 28 28 N 1.31853 * 120.77018 * 0.02562 * 27 26 25 29 29 C 1.31894 * 121.72099 * 359.70726 * 28 27 26 30 30 C 1.39038 * 119.94884 * 359.97438 * 13 12 11 31 31 H 0.97005 * 119.99631 * 359.97438 * 1 2 3 32 32 H 1.07994 * 119.98201 * 0.02562 * 10 9 7 33 33 H 1.07993 * 119.79848 * 180.23040 * 11 10 9 34 34 H 1.08000 * 119.82140 * 179.76507 * 12 11 10 35 35 H 0.97000 * 120.00031 * 0.02562 * 16 14 13 36 36 H 1.08994 * 110.90362 * 20.39693 * 19 17 16 37 37 H 1.08997 * 110.91055 * 143.97086 * 19 17 16 38 38 H 1.09000 * 110.62266 * 81.47139 * 20 19 17 39 39 H 1.08995 * 110.61980 * 204.31873 * 20 19 17 40 40 H 1.07996 * 120.79100 * 0.02562 * 25 24 22 41 41 H 1.08001 * 120.42107 * 180.02562 * 26 25 24 42 42 H 1.08004 * 119.61853 * 179.97438 * 27 26 25 43 43 H 1.07999 * 119.61437 * 180.31057 * 29 28 27 44 44 H 1.07990 * 120.20561 * 179.97438 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 1.2774 2.7465 0.0006 5 1 3.0961 1.6963 1.2125 6 1 3.0961 1.6964 -1.2124 7 6 2.0080 -1.2119 -0.0005 8 1 3.0509 -1.2334 0.2789 9 6 1.3492 -2.4086 -0.3672 10 6 1.8225 -3.6490 0.1013 11 6 1.1760 -4.8121 -0.2535 12 6 0.0662 -4.7728 -1.0790 13 6 -0.4154 -3.5501 -1.5585 14 6 -1.6024 -3.5166 -2.4398 15 8 -2.0207 -2.4538 -2.8558 16 7 -2.2204 -4.6645 -2.7818 17 6 -3.3959 -4.6313 -3.6554 18 1 -3.2899 -3.8487 -4.4066 19 6 -4.6833 -4.4129 -2.8235 20 6 -5.2197 -5.8589 -2.6699 21 8 -4.9118 -6.4694 -3.9416 22 6 -3.6080 -6.0022 -4.3266 23 1 -2.8470 -6.7038 -3.9849 24 6 -3.5380 -5.8555 -5.8248 25 6 -2.3787 -6.1875 -6.5094 26 6 -2.3597 -6.0359 -7.8872 27 6 -3.4891 -5.5627 -8.5283 28 7 -4.5744 -5.2568 -7.8449 29 6 -4.6300 -5.3933 -6.5342 30 6 0.2223 -2.3662 -1.2049 31 1 -0.4850 0.8401 0.0004 32 1 2.6904 -3.6882 0.7426 33 1 1.5401 -5.7612 0.1111 34 1 -0.4313 -5.6910 -1.3543 35 1 -1.8868 -5.5125 -2.4495 36 1 -4.4491 -3.9796 -1.8512 37 1 -5.3947 -3.7889 -3.3643 38 1 -4.7036 -6.3760 -1.8610 39 1 -6.2956 -5.8527 -2.4950 40 1 -1.5112 -6.5554 -5.9817 41 1 -1.4739 -6.2852 -8.4526 42 1 -3.4824 -5.4414 -9.6015 43 1 -5.5383 -5.1371 -6.0090 44 1 -0.1457 -1.4200 -1.5731 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346147307.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:20 Heat of formation + Delta-G solvation = -25.080019 kcal Electronic energy + Delta-G solvation = -28253.642359 eV Core-core repulsion = 24328.379852 eV Total energy + Delta-G solvation = -3925.262506 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.89200 -39.67528 -38.66030 -37.02209 -34.39649 -33.76774 -33.15831 -31.89393 -31.17342 -29.85889 -29.48767 -27.96088 -25.38149 -24.12031 -23.76381 -22.87117 -21.99492 -21.16210 -20.76077 -19.57978 -17.90399 -17.48354 -17.04725 -16.63379 -16.46917 -15.79335 -15.35673 -14.91122 -14.87603 -14.77404 -14.52952 -14.16582 -14.04148 -13.72480 -13.39175 -13.30658 -13.24844 -12.79782 -12.57074 -12.53823 -12.21283 -11.82940 -11.68864 -11.41058 -11.26306 -11.19532 -11.12347 -10.79699 -10.56040 -10.21404 -10.10047 -9.98108 -9.76412 -9.59050 -9.27391 -9.26111 -9.12253 -8.77422 -7.71001 -7.58887 -6.85624 -4.47479 0.87080 1.08569 2.11531 2.76390 3.04200 3.05698 3.12073 3.31612 3.48849 3.74250 3.85651 3.87628 4.19452 4.37854 4.44237 4.58417 4.62639 4.73414 4.81279 4.86530 4.89218 5.07353 5.17024 5.30211 5.50168 5.52825 5.54675 5.59013 5.69927 5.88798 5.91482 5.93405 6.01212 6.04851 6.19277 6.44885 6.50721 6.64867 6.75754 6.91968 6.94304 7.14689 7.30832 7.61620 7.66955 7.78861 7.84319 7.97399 8.11501 8.43751 8.73786 8.76477 8.82383 10.09092 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.014298 B = 0.002736 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.858456 B =10232.471922 C =10580.585199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.277 1.277 5 H -0.265 1.265 6 H -0.262 1.262 7 C -0.460 4.460 8 H 0.081 0.919 9 C 0.099 3.901 10 C -0.211 4.211 11 C -0.097 4.097 12 C -0.219 4.219 13 C -0.129 4.129 14 C 0.567 3.433 15 O -0.541 6.541 16 N -0.730 5.730 17 C 0.124 3.876 18 H 0.102 0.898 19 C -0.166 4.166 20 C 0.045 3.955 21 O -0.365 6.365 22 C 0.119 3.881 23 H 0.086 0.914 24 C -0.137 4.137 25 C -0.061 4.061 26 C -0.173 4.173 27 C 0.097 3.903 28 N -0.487 5.487 29 C 0.125 3.875 30 C -0.091 4.091 31 H 0.285 0.715 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.399 0.601 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.098 0.902 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.156 0.844 43 H 0.158 0.842 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.973 -11.419 -8.996 16.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.189 1.189 6 H -0.187 1.187 7 C -0.488 4.488 8 H 0.099 0.901 9 C 0.097 3.903 10 C -0.231 4.231 11 C -0.115 4.115 12 C -0.239 4.239 13 C -0.132 4.132 14 C 0.358 3.642 15 O -0.418 6.418 16 N -0.385 5.385 17 C 0.018 3.982 18 H 0.120 0.880 19 C -0.205 4.205 20 C -0.031 4.031 21 O -0.283 6.283 22 C 0.060 3.940 23 H 0.103 0.897 24 C -0.139 4.139 25 C -0.087 4.087 26 C -0.192 4.192 27 C -0.060 4.060 28 N -0.195 5.195 29 C -0.032 4.032 30 C -0.111 4.111 31 H 0.097 0.903 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.235 0.765 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.116 0.884 40 H 0.154 0.846 41 H 0.155 0.845 42 H 0.173 0.827 43 H 0.176 0.824 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.363 -10.300 -9.859 16.530 hybrid contribution 1.420 0.080 0.892 1.678 sum -6.944 -10.219 -8.967 15.266 Atomic orbital electron populations 1.69775 1.07582 1.29942 1.33398 1.25970 0.94793 1.01580 0.92270 0.86311 0.80116 0.80032 0.80009 1.20182 1.18939 1.18692 1.19572 0.98062 0.91010 1.40185 0.90064 1.17598 0.91173 0.92467 0.89100 1.21110 1.03414 0.92807 1.05787 1.20434 0.95996 0.96751 0.98328 1.20308 1.01508 0.94529 1.07596 1.19430 0.96523 0.95388 1.01847 1.18881 0.83075 0.82688 0.79583 1.90712 1.66379 1.29966 1.54729 1.46026 1.30401 1.10142 1.51921 1.22151 0.86242 0.96898 0.92869 0.87987 1.23583 0.97086 0.97480 1.02352 1.23647 1.01548 0.91915 0.86008 1.88924 1.33019 1.69025 1.37366 1.21668 0.87189 0.94832 0.90299 0.89681 1.20667 0.95855 1.02008 0.95413 1.21450 0.97333 0.95579 0.94381 1.22120 1.00315 1.01774 0.95032 1.22827 0.88589 0.94125 1.00435 1.67761 1.27750 1.15260 1.08707 1.22618 0.97768 0.93336 0.89515 1.21629 0.96448 0.96371 0.96667 0.90338 0.88581 0.88877 0.89343 0.76463 0.89031 0.89591 0.91678 0.88417 0.84553 0.84511 0.82722 0.82429 0.84881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.34 10.97 55.55 0.61 -19.73 16 2 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 3 Si 0.91 18.47 29.59 -169.99 -5.03 13.44 16 4 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 6 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 7 C -0.46 -11.82 9.05 -37.73 -0.34 -12.16 16 8 H 0.08 1.98 7.90 -52.49 -0.41 1.56 16 9 C 0.10 2.56 5.57 -106.87 -0.59 1.96 16 10 C -0.21 -4.87 9.78 -38.81 -0.38 -5.25 16 11 C -0.10 -1.98 10.01 -39.72 -0.40 -2.38 16 12 C -0.22 -4.37 9.55 -38.92 -0.37 -4.74 16 13 C -0.13 -2.90 5.87 -105.04 -0.62 -3.52 16 14 C 0.57 11.70 7.77 -12.31 -0.10 11.60 16 15 O -0.54 -12.99 16.04 5.32 0.09 -12.90 16 16 N -0.73 -11.11 5.06 -53.25 -0.27 -11.38 16 17 C 0.12 1.67 2.96 -66.40 -0.20 1.47 16 18 H 0.10 1.59 7.22 -51.93 -0.37 1.22 16 19 C -0.17 -1.99 6.88 -24.72 -0.17 -2.16 16 20 C 0.05 0.44 7.72 38.21 0.29 0.74 16 21 O -0.36 -4.14 10.47 -35.23 -0.37 -4.51 16 22 C 0.12 1.34 3.44 -27.31 -0.09 1.25 16 23 H 0.09 0.86 7.51 -51.93 -0.39 0.47 16 24 C -0.14 -1.59 4.78 -104.48 -0.50 -2.09 16 25 C -0.06 -0.64 9.84 -39.28 -0.39 -1.03 16 26 C -0.17 -1.62 10.11 -39.44 -0.40 -2.02 16 27 C 0.10 0.99 11.18 -17.55 -0.20 0.80 16 28 N -0.49 -6.10 10.36 -13.25 -0.14 -6.24 16 29 C 0.12 1.52 10.53 -17.55 -0.18 1.33 16 30 C -0.09 -2.36 8.23 -38.44 -0.32 -2.67 16 31 H 0.29 6.85 8.30 -40.82 -0.34 6.51 16 32 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 33 H 0.09 1.61 8.06 -52.49 -0.42 1.18 16 34 H 0.09 1.42 6.38 -52.49 -0.33 1.09 16 35 H 0.40 5.18 6.30 -40.82 -0.26 4.93 16 36 H 0.09 1.24 8.06 -51.93 -0.42 0.83 16 37 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.16 1.13 8.06 -52.48 -0.42 0.71 16 43 H 0.16 1.77 7.73 -52.49 -0.41 1.36 16 44 H 0.13 3.75 5.76 -52.49 -0.30 3.45 16 LS Contribution 372.10 15.07 5.61 5.61 Total: -1.00 -30.46 372.10 -9.95 -40.41 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -5.42 Total: 12.43 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -5.03 Total: -17.14 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.20 Total: -37.35 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -0.28 Total: -17.41 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.44 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.46 -9.95 -40.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346147307.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.335 kcal (2) G-P(sol) polarization free energy of solvation -30.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds