Wall clock time and date at job start Tue Mar 31 2020 20:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86800 * 120.00410 * 2 1 4 4 H 1.48506 * 109.46938 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47230 * 119.99862 * 3 2 1 6 6 H 1.48491 * 109.47492 * 240.00088 * 3 2 1 7 7 C 1.39942 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99900 * 197.38751 * 7 2 1 9 9 C 1.41435 * 119.99482 * 17.39090 * 7 2 1 10 10 C 1.40790 * 120.17208 * 204.79448 * 9 7 2 11 11 C 1.37717 * 120.03989 * 179.76254 * 10 9 7 12 12 C 1.38372 * 120.40778 * 0.51580 * 11 10 9 13 13 C 1.39881 * 120.36205 * 359.73797 * 12 11 10 14 14 C 1.47882 * 120.02977 * 180.02562 * 13 12 11 15 15 O 1.21549 * 120.00384 * 179.97438 * 14 13 12 16 16 N 1.34778 * 119.99665 * 359.97368 * 14 13 12 17 17 C 1.46500 * 120.00021 * 180.02562 * 16 14 13 18 18 H 1.08998 * 110.43680 * 36.08834 * 17 16 14 19 19 C 1.54821 * 110.48844 * 273.54959 * 17 16 14 20 20 C 1.54995 * 102.09058 * 262.20434 * 19 17 16 21 21 O 1.44382 * 103.49061 * 322.97581 * 20 19 17 22 22 C 1.43742 * 106.97719 * 40.06042 * 21 20 19 23 23 H 1.09001 * 109.88150 * 92.91283 * 22 21 20 24 24 C 1.50703 * 109.88231 * 214.06457 * 22 21 20 25 25 C 1.38668 * 120.41942 * 217.83269 * 24 22 21 26 26 C 1.38630 * 118.42116 * 180.02562 * 25 24 22 27 27 C 1.38225 * 119.15716 * 359.97438 * 26 25 24 28 28 N 1.31853 * 120.77018 * 0.02562 * 27 26 25 29 29 C 1.31894 * 121.72099 * 359.70726 * 28 27 26 30 30 C 1.39038 * 119.94884 * 359.97438 * 13 12 11 31 31 H 0.97005 * 119.99631 * 359.97438 * 1 2 3 32 32 H 1.07994 * 119.98201 * 0.02562 * 10 9 7 33 33 H 1.07993 * 119.79848 * 180.23040 * 11 10 9 34 34 H 1.08000 * 119.82140 * 179.76507 * 12 11 10 35 35 H 0.97000 * 120.00031 * 0.02562 * 16 14 13 36 36 H 1.08994 * 110.90362 * 20.39693 * 19 17 16 37 37 H 1.08997 * 110.91055 * 143.97086 * 19 17 16 38 38 H 1.09000 * 110.62266 * 81.47139 * 20 19 17 39 39 H 1.08995 * 110.61980 * 204.31873 * 20 19 17 40 40 H 1.07996 * 120.79100 * 0.02562 * 25 24 22 41 41 H 1.08001 * 120.42107 * 180.02562 * 26 25 24 42 42 H 1.08004 * 119.61853 * 179.97438 * 27 26 25 43 43 H 1.07999 * 119.61437 * 180.31057 * 29 28 27 44 44 H 1.07990 * 120.20561 * 179.97438 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 1.2774 2.7465 0.0006 5 1 3.0961 1.6963 1.2125 6 1 3.0961 1.6964 -1.2124 7 6 2.0080 -1.2119 -0.0005 8 1 3.0509 -1.2334 0.2789 9 6 1.3492 -2.4086 -0.3672 10 6 1.8225 -3.6490 0.1013 11 6 1.1760 -4.8121 -0.2535 12 6 0.0662 -4.7728 -1.0790 13 6 -0.4154 -3.5501 -1.5585 14 6 -1.6024 -3.5166 -2.4398 15 8 -2.0207 -2.4538 -2.8558 16 7 -2.2204 -4.6645 -2.7818 17 6 -3.3959 -4.6313 -3.6554 18 1 -3.2899 -3.8487 -4.4066 19 6 -4.6833 -4.4129 -2.8235 20 6 -5.2197 -5.8589 -2.6699 21 8 -4.9118 -6.4694 -3.9416 22 6 -3.6080 -6.0022 -4.3266 23 1 -2.8470 -6.7038 -3.9849 24 6 -3.5380 -5.8555 -5.8248 25 6 -2.3787 -6.1875 -6.5094 26 6 -2.3597 -6.0359 -7.8872 27 6 -3.4891 -5.5627 -8.5283 28 7 -4.5744 -5.2568 -7.8449 29 6 -4.6300 -5.3933 -6.5342 30 6 0.2223 -2.3662 -1.2049 31 1 -0.4850 0.8401 0.0004 32 1 2.6904 -3.6882 0.7426 33 1 1.5401 -5.7612 0.1111 34 1 -0.4313 -5.6910 -1.3543 35 1 -1.8868 -5.5125 -2.4495 36 1 -4.4491 -3.9796 -1.8512 37 1 -5.3947 -3.7889 -3.3643 38 1 -4.7036 -6.3760 -1.8610 39 1 -6.2956 -5.8527 -2.4950 40 1 -1.5112 -6.5554 -5.9817 41 1 -1.4739 -6.2852 -8.4526 42 1 -3.4824 -5.4414 -9.6015 43 1 -5.5383 -5.1371 -6.0090 44 1 -0.1457 -1.4200 -1.5731 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346147307.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:19 Heat of formation + Delta-G solvation = -43.847972 kcal Electronic energy + Delta-G solvation = -28254.456198 eV Core-core repulsion = 24328.379852 eV Total energy + Delta-G solvation = -3926.076346 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.86865 -40.86750 -39.91155 -38.73014 -35.82470 -35.47575 -34.03096 -32.70572 -32.55947 -31.38529 -31.16063 -28.94903 -27.19824 -25.14823 -24.74091 -24.07108 -23.00841 -22.83140 -21.97498 -21.14296 -19.55935 -18.35966 -18.29314 -17.69177 -17.50095 -17.05945 -16.97560 -16.49603 -16.03124 -15.95681 -15.65316 -15.35629 -15.20885 -15.05770 -14.86236 -14.45464 -14.29850 -14.25292 -14.01422 -13.56525 -13.51136 -13.27649 -12.94472 -12.82010 -12.69119 -12.53469 -12.28564 -12.27988 -12.17384 -11.90529 -11.51714 -11.07720 -11.04259 -10.86790 -10.79331 -10.42052 -10.31694 -9.90584 -9.48180 -9.38755 -8.67391 -6.38911 0.06028 0.28703 0.36077 1.01068 1.35627 1.46848 1.49583 2.03798 2.06685 2.18344 2.61285 2.77331 2.96962 3.33252 3.42646 3.60267 3.69805 3.76595 3.91811 3.94373 4.00591 4.06066 4.07823 4.17818 4.35926 4.43097 4.54870 4.58820 4.69146 4.78694 4.81236 4.85742 4.91153 4.95422 5.08046 5.13408 5.18645 5.23390 5.29683 5.34108 5.51169 5.68299 5.76558 5.85324 5.91746 6.04713 6.28216 6.46588 6.64636 6.87431 6.93971 6.97382 7.25382 8.29049 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.014298 B = 0.002736 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.858456 B =10232.471922 C =10580.585199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.030 3.970 3 Si 0.981 3.019 4 H -0.273 1.273 5 H -0.253 1.253 6 H -0.261 1.261 7 C -0.499 4.499 8 H 0.083 0.917 9 C 0.067 3.933 10 C -0.216 4.216 11 C -0.095 4.095 12 C -0.194 4.194 13 C -0.138 4.138 14 C 0.566 3.434 15 O -0.585 6.585 16 N -0.703 5.703 17 C 0.122 3.878 18 H 0.075 0.925 19 C -0.167 4.167 20 C 0.052 3.948 21 O -0.370 6.370 22 C 0.132 3.868 23 H 0.106 0.894 24 C -0.151 4.151 25 C -0.070 4.070 26 C -0.169 4.169 27 C 0.087 3.913 28 N -0.514 5.514 29 C 0.107 3.893 30 C -0.130 4.130 31 H 0.286 0.714 32 H 0.107 0.893 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.414 0.586 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.119 0.881 40 H 0.156 0.844 41 H 0.168 0.832 42 H 0.181 0.819 43 H 0.157 0.843 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.427 -14.549 -9.309 18.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.185 4.185 3 Si 0.801 3.199 4 H -0.197 1.197 5 H -0.176 1.176 6 H -0.185 1.185 7 C -0.528 4.528 8 H 0.102 0.898 9 C 0.065 3.935 10 C -0.236 4.236 11 C -0.113 4.113 12 C -0.214 4.214 13 C -0.142 4.142 14 C 0.357 3.643 15 O -0.466 6.466 16 N -0.357 5.357 17 C 0.017 3.983 18 H 0.094 0.906 19 C -0.206 4.206 20 C -0.024 4.024 21 O -0.289 6.289 22 C 0.073 3.927 23 H 0.124 0.876 24 C -0.154 4.154 25 C -0.096 4.096 26 C -0.188 4.188 27 C -0.069 4.069 28 N -0.223 5.223 29 C -0.049 4.049 30 C -0.151 4.151 31 H 0.096 0.904 32 H 0.126 0.874 33 H 0.157 0.843 34 H 0.157 0.843 35 H 0.253 0.747 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.137 0.863 40 H 0.174 0.826 41 H 0.185 0.815 42 H 0.198 0.802 43 H 0.174 0.826 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.825 -13.501 -10.165 18.624 hybrid contribution 1.199 0.824 0.903 1.712 sum -6.627 -12.677 -9.262 17.042 Atomic orbital electron populations 1.69879 1.09171 1.30592 1.35395 1.26824 0.95409 1.04869 0.91377 0.85267 0.78734 0.75606 0.80261 1.19748 1.17637 1.18542 1.19842 0.98422 0.92213 1.42316 0.89845 1.17934 0.91821 0.93894 0.89866 1.21423 1.03800 0.92878 1.05497 1.20933 0.95364 0.97657 0.97371 1.20853 1.00491 0.95100 1.04935 1.19731 0.96925 0.95553 1.01941 1.18707 0.82893 0.83409 0.79329 1.90694 1.67488 1.31987 1.56384 1.45720 1.30091 1.09043 1.50863 1.22232 0.85848 0.97951 0.92310 0.90648 1.23549 0.96555 0.99354 1.01093 1.23739 1.03013 0.89882 0.85771 1.88937 1.33013 1.68887 1.38042 1.21564 0.87787 0.93399 0.89961 0.87646 1.20766 0.96306 1.02685 0.95595 1.21802 0.97452 0.95259 0.95099 1.22486 1.00984 1.00434 0.94934 1.23359 0.88337 0.93513 1.01738 1.67747 1.29215 1.16303 1.09047 1.22689 0.98299 0.94151 0.89806 1.21421 0.98284 0.96401 0.98951 0.90367 0.87446 0.84272 0.84307 0.74661 0.90754 0.89371 0.90340 0.86308 0.82605 0.81469 0.80187 0.82613 0.88530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.64 10.97 21.83 0.24 -45.40 16 2 C 0.03 1.57 5.14 85.26 0.44 2.00 16 3 Si 0.98 39.38 29.59 68.60 2.03 41.41 16 4 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 5 H -0.25 -9.52 7.11 99.48 0.71 -8.82 16 6 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 7 C -0.50 -26.82 9.05 23.47 0.21 -26.61 16 8 H 0.08 4.23 7.90 -2.91 -0.02 4.20 16 9 C 0.07 3.57 5.57 -21.32 -0.12 3.45 16 10 C -0.22 -9.78 9.78 22.77 0.22 -9.55 16 11 C -0.10 -3.56 10.01 22.18 0.22 -3.34 16 12 C -0.19 -7.08 9.55 22.70 0.22 -6.86 16 13 C -0.14 -6.23 5.87 -20.13 -0.12 -6.35 16 14 C 0.57 23.52 7.77 86.80 0.67 24.19 16 15 O -0.58 -29.47 16.04 -3.87 -0.06 -29.53 16 16 N -0.70 -20.19 5.06 -440.66 -2.23 -22.42 16 17 C 0.12 3.16 2.96 45.99 0.14 3.30 16 18 H 0.08 2.42 7.22 -2.39 -0.02 2.40 16 19 C -0.17 -3.88 6.88 31.90 0.22 -3.66 16 20 C 0.05 0.89 7.72 72.66 0.56 1.45 16 21 O -0.37 -7.51 10.47 -148.98 -1.56 -9.07 16 22 C 0.13 2.68 3.44 30.22 0.10 2.78 16 23 H 0.11 1.72 7.51 -2.39 -0.02 1.70 16 24 C -0.15 -3.29 4.78 -19.77 -0.09 -3.39 16 25 C -0.07 -1.30 9.84 22.47 0.22 -1.08 16 26 C -0.17 -2.76 10.11 22.36 0.23 -2.53 16 27 C 0.09 1.65 11.18 84.69 0.95 2.59 16 28 N -0.51 -12.67 10.36 -195.84 -2.03 -14.70 16 29 C 0.11 2.57 10.53 84.67 0.89 3.47 16 30 C -0.13 -7.04 8.23 23.01 0.19 -6.86 16 31 H 0.29 14.66 8.30 -92.70 -0.77 13.89 16 32 H 0.11 4.50 8.06 -2.91 -0.02 4.47 16 33 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 34 H 0.14 3.62 6.38 -2.91 -0.02 3.61 16 35 H 0.41 9.15 6.30 -92.71 -0.58 8.57 16 36 H 0.07 2.01 8.06 -2.39 -0.02 1.99 16 37 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 41 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 42 H 0.18 2.26 8.06 -2.91 -0.02 2.23 16 43 H 0.16 3.56 7.73 -2.91 -0.02 3.54 16 44 H 0.10 5.89 5.76 -2.92 -0.02 5.88 16 Total: -1.00 -72.12 372.10 2.00 -70.12 By element: Atomic # 1 Polarization: 36.11 SS G_CDS: 0.46 Total: 36.57 kcal Atomic # 6 Polarization: -32.14 SS G_CDS: 5.15 Total: -26.99 kcal Atomic # 7 Polarization: -78.50 SS G_CDS: -4.02 Total: -82.52 kcal Atomic # 8 Polarization: -36.97 SS G_CDS: -1.62 Total: -38.60 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 2.03 Total: 41.41 kcal Total: -72.12 2.00 -70.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346147307.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.272 kcal (2) G-P(sol) polarization free energy of solvation -72.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds