Wall clock time and date at job start Tue Mar 31 2020 20:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86802 * 120.00093 * 2 1 4 4 H 1.48497 * 109.47074 * 274.66354 * 3 2 1 5 5 H 1.48504 * 109.46857 * 34.65902 * 3 2 1 6 6 H 1.48491 * 109.47204 * 154.66241 * 3 2 1 7 7 C 1.40229 * 120.00012 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99948 * 162.21281 * 7 2 1 9 9 C 1.41109 * 119.99706 * 342.20345 * 7 2 1 10 10 C 1.40890 * 120.10012 * 155.06855 * 9 7 2 11 11 C 1.36314 * 119.88989 * 180.02562 * 10 9 7 12 12 C 1.40009 * 120.10732 * 0.02562 * 11 10 9 13 13 C 1.47644 * 119.89167 * 179.97438 * 12 11 10 14 14 O 1.21584 * 120.00573 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99711 * 180.27203 * 13 12 11 16 16 C 1.46501 * 120.00278 * 179.72412 * 15 13 12 17 17 H 1.09000 * 110.45802 * 327.61514 * 16 15 13 18 18 C 1.54515 * 110.50917 * 90.36141 * 16 15 13 19 19 C 1.54477 * 104.06034 * 118.64659 * 18 16 15 20 20 O 1.44424 * 104.80540 * 336.02326 * 19 18 16 21 21 C 1.44425 * 105.27360 * 40.51289 * 20 19 18 22 22 H 1.08999 * 110.37519 * 78.32051 * 21 20 19 23 23 C 1.50698 * 110.46284 * 200.61166 * 21 20 19 24 24 C 1.38674 * 120.41910 * 215.16020 * 23 21 20 25 25 C 1.38623 * 118.42405 * 179.78223 * 24 23 21 26 26 C 1.38225 * 119.16142 * 0.46481 * 25 24 23 27 27 N 1.31859 * 120.76179 * 359.77656 * 26 25 24 28 28 C 1.31883 * 121.72595 * 359.97438 * 27 26 25 29 29 C 1.40013 * 120.21088 * 0.25432 * 12 11 10 30 30 C 1.36315 * 120.10295 * 359.48144 * 29 12 11 31 31 H 0.97002 * 120.00198 * 0.02562 * 1 2 3 32 32 H 1.08007 * 120.05178 * 359.97438 * 10 9 7 33 33 H 1.08008 * 119.94226 * 179.97438 * 11 10 9 34 34 H 0.97000 * 120.00052 * 359.73148 * 15 13 12 35 35 H 1.08995 * 110.51131 * 237.29491 * 18 16 15 36 36 H 1.08999 * 110.50832 * 359.97438 * 18 16 15 37 37 H 1.09003 * 110.37096 * 217.18868 * 19 18 16 38 38 H 1.09001 * 110.37084 * 94.85901 * 19 18 16 39 39 H 1.08003 * 120.78591 * 0.02562 * 24 23 21 40 40 H 1.08004 * 120.41927 * 180.26348 * 25 24 23 41 41 H 1.07992 * 119.62343 * 179.74957 * 26 25 24 42 42 H 1.07998 * 119.61977 * 179.97438 * 28 27 26 43 43 H 1.07994 * 119.94644 * 179.74105 * 29 12 11 44 44 H 1.08004 * 120.05264 * 180.25281 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.3894 2.1033 -1.3954 5 1 1.4906 2.6222 0.7962 6 1 3.5838 1.4137 0.5991 7 6 2.0076 -1.2144 -0.0005 8 1 3.0488 -1.2366 -0.2863 9 6 1.3526 -2.4074 0.3724 10 6 1.8230 -3.6489 -0.0992 11 6 1.1867 -4.7986 0.2634 12 6 0.0672 -4.7470 1.1026 13 6 -0.6187 -5.9952 1.4919 14 8 -0.2110 -7.0656 1.0842 15 7 -1.6998 -5.9476 2.2952 16 6 -2.3841 -7.1855 2.6766 17 1 -2.3197 -7.9195 1.8733 18 6 -1.7859 -7.7544 3.9828 19 6 -2.9713 -7.7458 4.9733 20 8 -3.8680 -6.7332 4.4670 21 6 -3.8601 -6.9007 3.0326 22 1 -4.4891 -7.7433 2.7454 23 6 -4.3300 -5.6408 2.3524 24 6 -5.0783 -5.7092 1.1869 25 6 -5.4928 -4.5246 0.5983 26 6 -5.1407 -3.3227 1.1832 27 7 -4.4235 -3.2954 2.2894 28 6 -4.0162 -4.4024 2.8792 29 6 -0.4075 -3.5152 1.5691 30 6 0.2255 -2.3606 1.2163 31 1 -0.4850 0.8400 -0.0004 32 1 2.6858 -3.6894 -0.7477 33 1 1.5463 -5.7507 -0.0980 34 1 -2.0250 -5.0937 2.6207 35 1 -1.4258 -8.7712 3.8268 36 1 -0.9808 -7.1148 4.3444 37 1 -2.6278 -7.4827 5.9738 38 1 -3.4640 -8.7181 4.9839 39 1 -5.3354 -6.6630 0.7503 40 1 -6.0807 -4.5404 -0.3076 41 1 -5.4562 -2.3952 0.7288 42 1 -3.4299 -4.3405 3.7841 43 1 -1.2738 -3.4801 2.2129 44 1 -0.1389 -1.4111 1.5799 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346214754.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:29 Heat of formation + Delta-G solvation = -23.555952 kcal Electronic energy + Delta-G solvation = -29050.388598 eV Core-core repulsion = 25125.192181 eV Total energy + Delta-G solvation = -3925.196418 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.89781 -39.37175 -38.55510 -37.02320 -34.26942 -33.86086 -32.92259 -31.81477 -31.05141 -29.80951 -29.42182 -28.00548 -25.86087 -23.91925 -23.64442 -22.31619 -21.91097 -21.04684 -20.52195 -19.65384 -17.52514 -17.31529 -17.23618 -16.69454 -16.33573 -15.81850 -15.50100 -15.34200 -14.72080 -14.49411 -14.32658 -14.00341 -13.79353 -13.56872 -13.23825 -13.16496 -13.08929 -12.77111 -12.47480 -12.11941 -12.04231 -11.85187 -11.69396 -11.50875 -11.35011 -11.24725 -11.11900 -10.95303 -10.63032 -10.17470 -10.05414 -9.79317 -9.54829 -9.38716 -9.33329 -9.02074 -8.95462 -8.67554 -7.70721 -7.53630 -7.01948 -4.59102 1.04897 1.25763 2.22788 2.91148 2.95957 3.01946 3.05447 3.51111 3.72815 3.74804 3.83293 3.86519 4.34121 4.45946 4.55567 4.62554 4.75066 4.87156 4.92920 4.97242 5.02140 5.12812 5.23442 5.44827 5.49661 5.56770 5.59196 5.70326 5.76060 5.97386 6.04066 6.08083 6.12146 6.14375 6.31874 6.55279 6.67221 6.78182 6.83582 6.90018 7.06204 7.14566 7.44630 7.65386 7.80730 7.87553 8.00948 8.08055 8.19270 8.41398 8.64097 8.76570 9.03272 9.89876 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.012730 B = 0.003569 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.941348 B = 7844.112450 C = 9097.761765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.075 3.925 3 Si 0.912 3.088 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.442 4.442 8 H 0.085 0.915 9 C 0.130 3.870 10 C -0.240 4.240 11 C -0.021 4.021 12 C -0.288 4.288 13 C 0.573 3.427 14 O -0.576 6.576 15 N -0.733 5.733 16 C 0.125 3.875 17 H 0.104 0.896 18 C -0.167 4.167 19 C 0.045 3.955 20 O -0.364 6.364 21 C 0.113 3.887 22 H 0.091 0.909 23 C -0.131 4.131 24 C -0.064 4.064 25 C -0.169 4.169 26 C 0.105 3.895 27 N -0.472 5.472 28 C 0.113 3.887 29 C -0.059 4.059 30 C -0.175 4.175 31 H 0.287 0.713 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.398 0.602 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.062 0.938 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.157 0.843 42 H 0.157 0.843 43 H 0.085 0.915 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.768 -8.157 5.542 14.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.147 4.147 3 Si 0.735 3.265 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.470 4.470 8 H 0.103 0.897 9 C 0.126 3.874 10 C -0.260 4.260 11 C -0.040 4.040 12 C -0.293 4.293 13 C 0.369 3.631 14 O -0.458 6.458 15 N -0.389 5.389 16 C 0.018 3.982 17 H 0.122 0.878 18 C -0.207 4.207 19 C -0.032 4.032 20 O -0.283 6.283 21 C 0.054 3.946 22 H 0.108 0.892 23 C -0.134 4.134 24 C -0.090 4.090 25 C -0.189 4.189 26 C -0.052 4.052 27 N -0.180 5.180 28 C -0.044 4.044 29 C -0.079 4.079 30 C -0.194 4.194 31 H 0.098 0.902 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.237 0.763 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.114 0.886 38 H 0.081 0.919 39 H 0.151 0.849 40 H 0.154 0.846 41 H 0.174 0.826 42 H 0.174 0.826 43 H 0.103 0.897 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.602 -7.761 5.733 14.335 hybrid contribution -0.008 0.167 -0.426 0.457 sum -10.610 -7.594 5.307 14.086 Atomic orbital electron populations 1.69746 1.07893 1.30099 1.31342 1.26102 0.94805 1.01864 0.91940 0.86227 0.80868 0.80013 0.79369 1.19249 1.19679 1.18082 1.19850 0.98384 0.91202 1.37528 0.89717 1.17787 0.90338 0.92161 0.87087 1.20707 1.04689 0.92681 1.07882 1.20338 0.92914 0.97103 0.93661 1.18867 1.04619 0.90952 1.14812 1.18638 0.78583 0.89708 0.76219 1.90615 1.66530 1.31713 1.56951 1.46187 1.31424 1.08514 1.52745 1.22088 0.89888 0.88831 0.97389 0.87820 1.23456 0.99150 1.02941 0.95106 1.23455 0.89396 0.91824 0.98485 1.89177 1.65902 1.55171 1.18067 1.22024 0.95638 0.94944 0.82035 0.89163 1.20440 1.00209 0.95591 0.97139 1.21318 0.94635 0.99193 0.93875 1.22103 1.01994 0.93346 1.01474 1.22861 0.92961 0.98012 0.91399 1.67781 1.09575 1.31168 1.09495 1.22585 0.96154 0.87053 0.98571 1.20456 0.97083 0.92632 0.97694 1.20965 0.99708 0.96931 1.01833 0.90179 0.88404 0.88185 0.76270 0.89693 0.89654 0.88642 0.91939 0.84853 0.84597 0.82560 0.82611 0.89658 0.86182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.66 10.96 55.56 0.61 -18.05 16 2 C 0.07 1.76 5.14 -17.31 -0.09 1.67 16 3 Si 0.91 17.43 29.60 -169.99 -5.03 12.40 16 4 H -0.27 -5.05 7.11 56.52 0.40 -4.64 16 5 H -0.27 -5.09 7.11 56.52 0.40 -4.68 16 6 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 7 C -0.44 -11.11 9.04 -37.75 -0.34 -11.45 16 8 H 0.08 2.03 7.91 -52.49 -0.42 1.61 16 9 C 0.13 3.35 5.57 -106.80 -0.60 2.75 16 10 C -0.24 -5.89 9.73 -39.27 -0.38 -6.27 16 11 C -0.02 -0.50 9.52 -39.61 -0.38 -0.88 16 12 C -0.29 -6.75 5.89 -104.73 -0.62 -7.36 16 13 C 0.57 12.29 7.76 -12.42 -0.10 12.19 16 14 O -0.58 -13.45 15.97 5.29 0.08 -13.37 16 15 N -0.73 -12.63 4.36 -53.29 -0.23 -12.86 16 16 C 0.12 1.72 3.33 -66.36 -0.22 1.50 16 17 H 0.10 1.50 7.55 -51.93 -0.39 1.10 16 18 C -0.17 -1.96 6.88 -25.16 -0.17 -2.13 16 19 C 0.05 0.43 7.63 37.93 0.29 0.72 16 20 O -0.36 -4.39 10.60 -35.23 -0.37 -4.77 16 21 C 0.11 1.32 3.48 -27.11 -0.09 1.23 16 22 H 0.09 0.85 8.08 -51.93 -0.42 0.43 16 23 C -0.13 -1.73 4.43 -104.48 -0.46 -2.19 16 24 C -0.06 -0.75 9.85 -39.28 -0.39 -1.14 16 25 C -0.17 -1.95 10.11 -39.44 -0.40 -2.35 16 26 C 0.10 1.40 11.18 -17.54 -0.20 1.20 16 27 N -0.47 -7.39 10.36 -13.25 -0.14 -7.53 16 28 C 0.11 1.67 8.29 -17.55 -0.15 1.52 16 29 C -0.06 -1.38 9.47 -39.61 -0.38 -1.76 16 30 C -0.18 -4.42 8.63 -39.27 -0.34 -4.76 16 31 H 0.29 6.29 8.29 -40.82 -0.34 5.95 16 32 H 0.10 2.23 8.06 -52.48 -0.42 1.81 16 33 H 0.10 2.30 7.63 -52.48 -0.40 1.90 16 34 H 0.40 6.75 3.28 -40.82 -0.13 6.62 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.08 1.13 7.96 -51.93 -0.41 0.72 16 37 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.13 1.20 8.06 -52.48 -0.42 0.77 16 40 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 41 H 0.16 1.72 8.06 -52.49 -0.42 1.30 16 42 H 0.16 2.23 7.28 -52.49 -0.38 1.85 16 43 H 0.09 1.81 6.37 -52.49 -0.33 1.47 16 44 H 0.12 3.09 6.17 -52.48 -0.32 2.77 16 LS Contribution 366.29 15.07 5.52 5.52 Total: -1.00 -30.17 366.29 -9.87 -40.04 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: -5.31 Total: 16.12 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: -5.00 Total: -17.50 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.24 Total: -38.44 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.29 Total: -18.14 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.03 Total: 12.40 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.17 -9.87 -40.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346214754.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.484 kcal (2) G-P(sol) polarization free energy of solvation -30.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds