Wall clock time and date at job start Tue Mar 31 2020 20:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86802 * 120.00093 * 2 1 4 4 H 1.48497 * 109.47074 * 274.66354 * 3 2 1 5 5 H 1.48504 * 109.46857 * 34.65902 * 3 2 1 6 6 H 1.48491 * 109.47204 * 154.66241 * 3 2 1 7 7 C 1.40229 * 120.00012 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99948 * 162.21281 * 7 2 1 9 9 C 1.41109 * 119.99706 * 342.20345 * 7 2 1 10 10 C 1.40890 * 120.10012 * 155.06855 * 9 7 2 11 11 C 1.36314 * 119.88989 * 180.02562 * 10 9 7 12 12 C 1.40009 * 120.10732 * 0.02562 * 11 10 9 13 13 C 1.47644 * 119.89167 * 179.97438 * 12 11 10 14 14 O 1.21584 * 120.00573 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99711 * 180.27203 * 13 12 11 16 16 C 1.46501 * 120.00278 * 179.72412 * 15 13 12 17 17 H 1.09000 * 110.45802 * 327.61514 * 16 15 13 18 18 C 1.54515 * 110.50917 * 90.36141 * 16 15 13 19 19 C 1.54477 * 104.06034 * 118.64659 * 18 16 15 20 20 O 1.44424 * 104.80540 * 336.02326 * 19 18 16 21 21 C 1.44425 * 105.27360 * 40.51289 * 20 19 18 22 22 H 1.08999 * 110.37519 * 78.32051 * 21 20 19 23 23 C 1.50698 * 110.46284 * 200.61166 * 21 20 19 24 24 C 1.38674 * 120.41910 * 215.16020 * 23 21 20 25 25 C 1.38623 * 118.42405 * 179.78223 * 24 23 21 26 26 C 1.38225 * 119.16142 * 0.46481 * 25 24 23 27 27 N 1.31859 * 120.76179 * 359.77656 * 26 25 24 28 28 C 1.31883 * 121.72595 * 359.97438 * 27 26 25 29 29 C 1.40013 * 120.21088 * 0.25432 * 12 11 10 30 30 C 1.36315 * 120.10295 * 359.48144 * 29 12 11 31 31 H 0.97002 * 120.00198 * 0.02562 * 1 2 3 32 32 H 1.08007 * 120.05178 * 359.97438 * 10 9 7 33 33 H 1.08008 * 119.94226 * 179.97438 * 11 10 9 34 34 H 0.97000 * 120.00052 * 359.73148 * 15 13 12 35 35 H 1.08995 * 110.51131 * 237.29491 * 18 16 15 36 36 H 1.08999 * 110.50832 * 359.97438 * 18 16 15 37 37 H 1.09003 * 110.37096 * 217.18868 * 19 18 16 38 38 H 1.09001 * 110.37084 * 94.85901 * 19 18 16 39 39 H 1.08003 * 120.78591 * 0.02562 * 24 23 21 40 40 H 1.08004 * 120.41927 * 180.26348 * 25 24 23 41 41 H 1.07992 * 119.62343 * 179.74957 * 26 25 24 42 42 H 1.07998 * 119.61977 * 179.97438 * 28 27 26 43 43 H 1.07994 * 119.94644 * 179.74105 * 29 12 11 44 44 H 1.08004 * 120.05264 * 180.25281 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.3894 2.1033 -1.3954 5 1 1.4906 2.6222 0.7962 6 1 3.5838 1.4137 0.5991 7 6 2.0076 -1.2144 -0.0005 8 1 3.0488 -1.2366 -0.2863 9 6 1.3526 -2.4074 0.3724 10 6 1.8230 -3.6489 -0.0992 11 6 1.1867 -4.7986 0.2634 12 6 0.0672 -4.7470 1.1026 13 6 -0.6187 -5.9952 1.4919 14 8 -0.2110 -7.0656 1.0842 15 7 -1.6998 -5.9476 2.2952 16 6 -2.3841 -7.1855 2.6766 17 1 -2.3197 -7.9195 1.8733 18 6 -1.7859 -7.7544 3.9828 19 6 -2.9713 -7.7458 4.9733 20 8 -3.8680 -6.7332 4.4670 21 6 -3.8601 -6.9007 3.0326 22 1 -4.4891 -7.7433 2.7454 23 6 -4.3300 -5.6408 2.3524 24 6 -5.0783 -5.7092 1.1869 25 6 -5.4928 -4.5246 0.5983 26 6 -5.1407 -3.3227 1.1832 27 7 -4.4235 -3.2954 2.2894 28 6 -4.0162 -4.4024 2.8792 29 6 -0.4075 -3.5152 1.5691 30 6 0.2255 -2.3606 1.2163 31 1 -0.4850 0.8400 -0.0004 32 1 2.6858 -3.6894 -0.7477 33 1 1.5463 -5.7507 -0.0980 34 1 -2.0250 -5.0937 2.6207 35 1 -1.4258 -8.7712 3.8268 36 1 -0.9808 -7.1148 4.3444 37 1 -2.6278 -7.4827 5.9738 38 1 -3.4640 -8.7181 4.9839 39 1 -5.3354 -6.6630 0.7503 40 1 -6.0807 -4.5404 -0.3076 41 1 -5.4562 -2.3952 0.7288 42 1 -3.4299 -4.3405 3.7841 43 1 -1.2738 -3.4801 2.2129 44 1 -0.1389 -1.4111 1.5799 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346214754.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:28 Heat of formation + Delta-G solvation = -40.931896 kcal Electronic energy + Delta-G solvation = -29051.142076 eV Core-core repulsion = 25125.192181 eV Total energy + Delta-G solvation = -3925.949895 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.96450 -40.64220 -39.90979 -38.79811 -35.69735 -35.59816 -33.93992 -32.78144 -32.50190 -31.38937 -31.23948 -29.05422 -27.62055 -24.98915 -24.63250 -23.85161 -22.89368 -22.86473 -21.88535 -21.15539 -19.39451 -18.77298 -18.24380 -17.82758 -17.37781 -17.19829 -16.78756 -16.62575 -15.90918 -15.83171 -15.77660 -15.37191 -15.19063 -15.02573 -14.75382 -14.46443 -14.15045 -14.02114 -13.94506 -13.79133 -13.47097 -13.25392 -13.00223 -12.85854 -12.67083 -12.62342 -12.43327 -12.38111 -12.05206 -11.80232 -11.41760 -11.13751 -11.03452 -10.79956 -10.71982 -10.38851 -10.10075 -9.97468 -9.61983 -9.44357 -8.81142 -6.50756 0.05791 0.29700 0.40068 1.11275 1.37003 1.41337 1.54201 2.07599 2.16364 2.26965 2.67616 2.75301 2.90637 3.39603 3.50480 3.58726 3.66761 3.89029 3.94014 4.05005 4.08425 4.12186 4.13603 4.23285 4.25548 4.38274 4.41142 4.56801 4.63829 4.77303 4.81402 4.88442 4.91162 5.00142 5.04701 5.11753 5.12290 5.19653 5.25946 5.49028 5.55453 5.68607 5.75974 5.80617 5.90849 5.96605 6.18830 6.50820 6.58313 6.74079 6.85300 6.99760 7.36652 8.13940 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.012730 B = 0.003569 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.941348 B = 7844.112450 C = 9097.761765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.037 3.963 3 Si 0.987 3.013 4 H -0.259 1.259 5 H -0.263 1.263 6 H -0.256 1.256 7 C -0.471 4.471 8 H 0.089 0.911 9 C 0.104 3.896 10 C -0.252 4.252 11 C -0.029 4.029 12 C -0.299 4.299 13 C 0.574 3.426 14 O -0.597 6.597 15 N -0.720 5.720 16 C 0.114 3.886 17 H 0.101 0.899 18 C -0.165 4.165 19 C 0.049 3.951 20 O -0.380 6.380 21 C 0.122 3.878 22 H 0.125 0.875 23 C -0.140 4.140 24 C -0.068 4.068 25 C -0.164 4.164 26 C 0.083 3.917 27 N -0.508 5.508 28 C 0.092 3.908 29 C -0.052 4.052 30 C -0.195 4.195 31 H 0.297 0.703 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.399 0.601 35 H 0.099 0.901 36 H 0.064 0.936 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.167 0.833 40 H 0.169 0.831 41 H 0.171 0.829 42 H 0.148 0.852 43 H 0.101 0.899 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.992 -8.938 5.598 15.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.182 4.182 3 Si 0.807 3.193 4 H -0.183 1.183 5 H -0.187 1.187 6 H -0.179 1.179 7 C -0.498 4.498 8 H 0.107 0.893 9 C 0.100 3.900 10 C -0.271 4.271 11 C -0.048 4.048 12 C -0.303 4.303 13 C 0.368 3.632 14 O -0.482 6.482 15 N -0.374 5.374 16 C 0.009 3.991 17 H 0.119 0.881 18 C -0.204 4.204 19 C -0.027 4.027 20 O -0.299 6.299 21 C 0.063 3.937 22 H 0.142 0.858 23 C -0.142 4.142 24 C -0.093 4.093 25 C -0.183 4.183 26 C -0.074 4.074 27 N -0.216 5.216 28 C -0.065 4.065 29 C -0.071 4.071 30 C -0.214 4.214 31 H 0.108 0.892 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.239 0.761 35 H 0.117 0.883 36 H 0.083 0.917 37 H 0.125 0.875 38 H 0.110 0.890 39 H 0.184 0.816 40 H 0.186 0.814 41 H 0.188 0.812 42 H 0.165 0.835 43 H 0.118 0.882 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.861 -8.565 5.816 15.743 hybrid contribution 0.289 0.346 -0.440 0.630 sum -11.572 -8.219 5.375 15.177 Atomic orbital electron populations 1.69778 1.09359 1.31663 1.31142 1.26969 0.95508 1.04951 0.90775 0.85105 0.79283 0.75217 0.79721 1.18348 1.18728 1.17911 1.20144 0.98820 0.92128 1.38734 0.89343 1.18110 0.90993 0.93087 0.87762 1.20873 1.05276 0.92636 1.08324 1.20499 0.93238 0.97206 0.93894 1.19188 1.04663 0.92053 1.14436 1.18349 0.79492 0.88528 0.76845 1.90594 1.67465 1.31990 1.58109 1.46109 1.30052 1.10163 1.51071 1.22417 0.91378 0.87051 0.98290 0.88115 1.23421 0.99470 1.03046 0.94466 1.23612 0.88218 0.92707 0.98158 1.89179 1.66296 1.56307 1.18110 1.22080 0.94301 0.95328 0.81953 0.85795 1.20660 1.00341 0.95435 0.97800 1.21781 0.93664 1.00734 0.93168 1.22480 1.01242 0.92543 1.02060 1.23268 0.93128 0.99733 0.91228 1.67704 1.10890 1.32162 1.10873 1.22567 0.97155 0.87854 0.98913 1.20547 0.97112 0.92155 0.97316 1.20941 1.00541 0.97050 1.02865 0.89197 0.87409 0.87520 0.76095 0.88276 0.91682 0.87484 0.89003 0.81599 0.81368 0.81173 0.83479 0.88152 0.87325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.24 10.96 21.87 0.24 -39.00 16 2 C 0.04 1.77 5.14 85.35 0.44 2.21 16 3 Si 0.99 35.40 29.60 68.60 2.03 37.43 16 4 H -0.26 -8.90 7.11 99.48 0.71 -8.20 16 5 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 6 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 7 C -0.47 -24.19 9.04 23.46 0.21 -23.98 16 8 H 0.09 4.31 7.91 -2.91 -0.02 4.29 16 9 C 0.10 5.53 5.57 -21.28 -0.12 5.41 16 10 C -0.25 -12.68 9.73 22.47 0.22 -12.46 16 11 C -0.03 -1.43 9.52 22.25 0.21 -1.22 16 12 C -0.30 -14.25 5.89 -19.93 -0.12 -14.37 16 13 C 0.57 24.66 7.76 86.73 0.67 25.33 16 14 O -0.60 -27.80 15.97 -3.98 -0.06 -27.86 16 15 N -0.72 -24.54 4.36 -440.77 -1.92 -26.46 16 16 C 0.11 2.95 3.33 46.01 0.15 3.11 16 17 H 0.10 2.72 7.55 -2.39 -0.02 2.70 16 18 C -0.17 -3.58 6.88 31.61 0.22 -3.36 16 19 C 0.05 0.81 7.63 72.48 0.55 1.36 16 20 O -0.38 -8.35 10.60 -148.98 -1.58 -9.93 16 21 C 0.12 2.58 3.48 30.35 0.11 2.68 16 22 H 0.12 1.83 8.08 -2.39 -0.02 1.81 16 23 C -0.14 -3.46 4.43 -19.77 -0.09 -3.55 16 24 C -0.07 -1.41 9.85 22.47 0.22 -1.19 16 25 C -0.16 -3.43 10.11 22.36 0.23 -3.21 16 26 C 0.08 2.18 11.18 84.69 0.95 3.12 16 27 N -0.51 -16.14 10.36 -195.85 -2.03 -18.17 16 28 C 0.09 2.71 8.29 84.67 0.70 3.41 16 29 C -0.05 -2.49 9.47 22.25 0.21 -2.28 16 30 C -0.19 -10.16 8.63 22.47 0.19 -9.97 16 31 H 0.30 13.05 8.29 -92.71 -0.77 12.28 16 32 H 0.11 5.04 8.06 -2.91 -0.02 5.02 16 33 H 0.11 4.99 7.63 -2.91 -0.02 4.97 16 34 H 0.40 13.62 3.28 -92.71 -0.30 13.31 16 35 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.06 1.68 7.96 -2.39 -0.02 1.66 16 37 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 40 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 41 H 0.17 3.70 8.06 -2.91 -0.02 3.67 16 42 H 0.15 4.37 7.28 -2.91 -0.02 4.35 16 43 H 0.10 4.38 6.37 -2.91 -0.02 4.36 16 44 H 0.11 5.84 6.17 -2.91 -0.02 5.82 16 Total: -1.00 -66.94 366.29 2.38 -64.57 By element: Atomic # 1 Polarization: 47.65 SS G_CDS: 0.74 Total: 48.38 kcal Atomic # 6 Polarization: -33.92 SS G_CDS: 4.96 Total: -28.96 kcal Atomic # 7 Polarization: -79.93 SS G_CDS: -3.71 Total: -83.64 kcal Atomic # 8 Polarization: -36.14 SS G_CDS: -1.64 Total: -37.79 kcal Atomic # 14 Polarization: 35.40 SS G_CDS: 2.03 Total: 37.43 kcal Total: -66.94 2.38 -64.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346214754.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.636 kcal (2) G-P(sol) polarization free energy of solvation -66.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds