Wall clock time and date at job start Tue Mar 31 2020 20:32:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30644 * 1
3 3 Si 1.86806 * 119.99715 * 2 1
4 4 H 1.48493 * 109.47121 * 180.02562 * 3 2 1
5 5 H 1.48500 * 109.46976 * 300.00422 * 3 2 1
6 6 H 1.48504 * 109.46853 * 60.00208 * 3 2 1
7 7 C 1.40226 * 120.00751 * 180.02562 * 2 1 3
8 8 H 1.07999 * 120.00273 * 197.89739 * 7 2 1
9 9 C 1.41112 * 119.99390 * 17.89129 * 7 2 1
10 10 C 1.40891 * 120.10231 * 204.63608 * 9 7 2
11 11 C 1.36317 * 119.89032 * 179.97438 * 10 9 7
12 12 C 1.40013 * 120.10770 * 359.97438 * 11 10 9
13 13 C 1.47642 * 119.89499 * 180.02562 * 12 11 10
14 14 O 1.21584 * 119.99996 * 359.97438 * 13 12 11
15 15 N 1.34771 * 119.99834 * 179.97438 * 13 12 11
16 16 C 1.46507 * 119.99919 * 179.97438 * 15 13 12
17 17 H 1.09003 * 110.55949 * 32.32069 * 16 15 13
18 18 C 1.54507 * 110.50845 * 269.64145 * 16 15 13
19 19 C 1.54479 * 104.05995 * 241.35245 * 18 16 15
20 20 O 1.44422 * 104.80726 * 336.02363 * 19 18 16
21 21 C 1.44425 * 105.27178 * 40.51138 * 20 19 18
22 22 H 1.09004 * 110.37305 * 78.43260 * 21 20 19
23 23 C 1.50708 * 110.37351 * 200.65917 * 21 20 19
24 24 C 1.38664 * 120.41852 * 218.56995 * 23 21 20
25 25 C 1.38627 * 118.42100 * 179.97438 * 24 23 21
26 26 C 1.38228 * 119.16254 * 0.02562 * 25 24 23
27 27 N 1.31853 * 120.75956 * 0.02562 * 26 25 24
28 28 C 1.31889 * 121.73080 * 359.97438 * 27 26 25
29 29 C 1.40011 * 120.21033 * 0.26598 * 12 11 10
30 30 C 1.36325 * 120.10330 * 359.49187 * 29 12 11
31 31 H 0.96995 * 120.00304 * 359.97438 * 1 2 3
32 32 H 1.07999 * 120.05381 * 359.96406 * 10 9 7
33 33 H 1.08000 * 119.94169 * 180.02562 * 11 10 9
34 34 H 0.96999 * 120.00608 * 359.97438 * 15 13 12
35 35 H 1.08998 * 110.50765 * 122.71403 * 18 16 15
36 36 H 1.08992 * 110.51748 * 359.97438 * 18 16 15
37 37 H 1.09007 * 110.37434 * 217.19471 * 19 18 16
38 38 H 1.09003 * 110.37548 * 94.85911 * 19 18 16
39 39 H 1.08000 * 120.79159 * 0.02562 * 24 23 21
40 40 H 1.08007 * 120.42329 * 179.97438 * 25 24 23
41 41 H 1.08001 * 119.62194 * 180.02562 * 26 25 24
42 42 H 1.07994 * 119.61779 * 179.97438 * 28 27 26
43 43 H 1.07995 * 119.95120 * 179.72699 * 29 12 11
44 44 H 1.08007 * 120.05047 * 180.25429 * 30 29 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3064 0.0000 0.0000
3 14 2.2404 1.6178 0.0000
4 1 3.7003 1.3466 -0.0006
5 1 1.8815 2.3965 -1.2125
6 1 1.8816 2.3965 1.2126
7 6 2.0077 -1.2143 -0.0005
8 1 3.0485 -1.2370 0.2869
9 6 1.3534 -2.4067 -0.3765
10 6 1.8269 -3.6494 0.0886
11 6 1.1911 -4.7986 -0.2769
12 6 0.0691 -4.7451 -1.1127
13 6 -0.6162 -5.9926 -1.5051
14 8 -0.2058 -7.0641 -1.1030
15 7 -1.6968 -5.9436 -2.3091
16 6 -2.3765 -7.1815 -2.6990
17 1 -2.3103 -7.9220 -1.9018
18 6 -1.7752 -7.7399 -4.0081
19 6 -2.9597 -7.7292 -4.9997
20 8 -4.1387 -7.7752 -4.1668
21 6 -3.8531 -6.8993 -3.0545
22 1 -3.9819 -5.8577 -3.3489
23 6 -4.7460 -7.2274 -1.8857
24 6 -5.2665 -6.2150 -1.0939
25 6 -6.0836 -6.5636 -0.0297
26 6 -6.3500 -7.8994 0.2055
27 7 -5.8367 -8.8358 -0.5679
28 6 -5.0555 -8.5410 -1.5889
29 6 -0.4022 -3.5129 -1.5815
30 6 0.2240 -2.3580 -1.2174
31 1 -0.4850 0.8400 0.0004
32 1 2.6921 -3.6916 0.7335
33 1 1.5531 -5.7516 0.0795
34 1 -2.0245 -5.0887 -2.6296
35 1 -1.4119 -8.7566 -3.8582
36 1 -0.9726 -7.0949 -4.3655
37 1 -2.9193 -8.6041 -5.6487
38 1 -2.9496 -6.8149 -5.5930
39 1 -5.0413 -5.1794 -1.3018
40 1 -6.5060 -5.8012 0.6082
41 1 -6.9860 -8.1794 1.0323
42 1 -4.6532 -9.3354 -2.1999
43 1 -1.2654 -3.4769 -2.2295
44 1 -0.1427 -1.4076 -1.5762
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000346214757.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:32:33
Heat of formation + Delta-G solvation = -29.530614 kcal
Electronic energy + Delta-G solvation = -28119.621986 eV
Core-core repulsion = 24194.166488 eV
Total energy + Delta-G solvation = -3925.455498 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 338.142 amu
Computer time = 1.02 seconds
Orbital eigenvalues (eV)
-40.78848 -39.57372 -38.62413 -37.11354 -34.34330 -33.94273 -33.08210 -31.85406
-31.14673 -29.90682 -29.50963 -27.94445 -25.90932 -24.11195 -23.57288 -22.46523
-21.87184 -21.18159 -20.70841 -19.67546 -17.61280 -17.49344 -17.19807 -16.82377
-16.44473 -16.04222 -15.55166 -14.99181 -14.78031 -14.55978 -14.09718 -14.07878
-14.00093 -13.71680 -13.43130 -13.30771 -13.17738 -12.84808 -12.67018 -12.31771
-12.18320 -11.96996 -11.75957 -11.44607 -11.43427 -11.32940 -11.04759 -10.95852
-10.71791 -10.20752 -10.10569 -9.90807 -9.63670 -9.54695 -9.42080 -9.21575
-9.06687 -8.68905 -7.79856 -7.61945 -7.10770 -4.67229 0.93505 1.15932
2.14503 2.85146 2.90658 2.96042 2.96873 3.34106 3.60874 3.68443
3.75956 3.94101 4.25698 4.41630 4.47008 4.56184 4.67758 4.80863
4.85726 4.87656 4.95183 5.07568 5.16788 5.36545 5.49661 5.53779
5.58028 5.67642 5.76337 5.92221 5.95410 5.96910 6.05657 6.09864
6.24857 6.44602 6.56142 6.70107 6.75849 6.83005 6.97524 7.05945
7.36315 7.56790 7.70359 7.79118 7.85086 7.99934 8.10660 8.32878
8.56255 8.67999 8.96336 9.81099
Molecular weight = 338.14amu
Principal moments of inertia in cm(-1)
A = 0.014098 B = 0.002677 C = 0.002503
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1985.688363 B =10458.698564 C =11183.604203
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.770 5.770
2 C 0.074 3.926
3 Si 0.913 3.087
4 H -0.257 1.257
5 H -0.269 1.269
6 H -0.271 1.271
7 C -0.440 4.440
8 H 0.086 0.914
9 C 0.129 3.871
10 C -0.239 4.239
11 C -0.021 4.021
12 C -0.286 4.286
13 C 0.574 3.426
14 O -0.571 6.571
15 N -0.733 5.733
16 C 0.128 3.872
17 H 0.102 0.898
18 C -0.168 4.168
19 C 0.045 3.955
20 O -0.362 6.362
21 C 0.116 3.884
22 H 0.084 0.916
23 C -0.133 4.133
24 C -0.059 4.059
25 C -0.172 4.172
26 C 0.097 3.903
27 N -0.487 5.487
28 C 0.124 3.876
29 C -0.062 4.062
30 C -0.178 4.178
31 H 0.286 0.714
32 H 0.098 0.902
33 H 0.101 0.899
34 H 0.397 0.603
35 H 0.083 0.917
36 H 0.086 0.914
37 H 0.096 0.904
38 H 0.063 0.937
39 H 0.137 0.863
40 H 0.137 0.863
41 H 0.155 0.845
42 H 0.158 0.842
43 H 0.087 0.913
44 H 0.120 0.880
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.006 -6.181 -6.356 13.369
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.393 5.393
2 C -0.147 4.147
3 Si 0.736 3.264
4 H -0.180 1.180
5 H -0.193 1.193
6 H -0.196 1.196
7 C -0.468 4.468
8 H 0.104 0.896
9 C 0.125 3.875
10 C -0.258 4.258
11 C -0.040 4.040
12 C -0.291 4.291
13 C 0.370 3.630
14 O -0.452 6.452
15 N -0.387 5.387
16 C 0.021 3.979
17 H 0.120 0.880
18 C -0.207 4.207
19 C -0.032 4.032
20 O -0.280 6.280
21 C 0.057 3.943
22 H 0.102 0.898
23 C -0.135 4.135
24 C -0.085 4.085
25 C -0.192 4.192
26 C -0.059 4.059
27 N -0.195 5.195
28 C -0.033 4.033
29 C -0.082 4.082
30 C -0.197 4.197
31 H 0.098 0.902
32 H 0.116 0.884
33 H 0.119 0.881
34 H 0.233 0.767
35 H 0.101 0.899
36 H 0.105 0.895
37 H 0.114 0.886
38 H 0.081 0.919
39 H 0.155 0.845
40 H 0.155 0.845
41 H 0.173 0.827
42 H 0.175 0.825
43 H 0.105 0.895
44 H 0.138 0.862
Dipole moment (debyes) X Y Z Total
from point charges -10.326 -7.793 -5.907 14.221
hybrid contribution 0.492 2.329 -0.270 2.396
sum -9.834 -5.463 -6.177 12.834
Atomic orbital electron populations
1.69742 1.07939 1.30026 1.31637 1.26108 0.94817 1.01946 0.91843
0.86169 0.81149 0.80137 0.78909 1.18023 1.19349 1.19619 1.19902
0.98485 0.91190 1.37220 0.89623 1.17794 0.90353 0.92179 0.87134
1.20723 1.04625 0.92631 1.07835 1.20360 0.92859 0.97163 0.93601
1.18847 1.04596 0.90876 1.14741 1.18609 0.78553 0.89730 0.76136
1.90645 1.66192 1.31676 1.56713 1.45895 1.31827 1.07960 1.53025
1.22133 0.89294 0.88916 0.97524 0.88011 1.23411 0.98852 1.03248
0.95181 1.23472 0.83819 1.02419 0.93505 1.89176 1.37557 1.66372
1.34917 1.21886 0.92316 0.94874 0.85241 0.89794 1.20512 1.00078
0.95332 0.97612 1.21443 0.93765 0.99684 0.93616 1.22127 1.00068
0.98158 0.98811 1.22821 0.96647 0.89071 0.97404 1.67746 1.09182
1.37810 1.04788 1.22607 0.92854 0.94957 0.92891 1.20444 0.97345
0.92589 0.97787 1.20974 0.99909 0.96896 1.01947 0.90236 0.88356
0.88128 0.76717 0.89853 0.89488 0.88608 0.91873 0.84544 0.84466
0.82723 0.82456 0.89460 0.86189
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.77 -17.85 10.95 55.56 0.61 -17.24 16
2 C 0.07 1.68 5.14 -17.31 -0.09 1.59 16
3 Si 0.91 16.77 29.60 -169.99 -5.03 11.74 16
4 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16
5 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16
6 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16
7 C -0.44 -10.66 9.04 -37.75 -0.34 -11.00 16
8 H 0.09 1.99 7.91 -52.49 -0.42 1.57 16
9 C 0.13 3.18 5.58 -106.80 -0.60 2.58 16
10 C -0.24 -5.63 9.73 -39.27 -0.38 -6.02 16
11 C -0.02 -0.47 9.52 -39.61 -0.38 -0.85 16
12 C -0.29 -6.26 5.89 -104.73 -0.62 -6.88 16
13 C 0.57 11.60 7.76 -12.42 -0.10 11.51 16
14 O -0.57 -13.14 15.97 5.29 0.08 -13.05 16
15 N -0.73 -11.32 5.00 -53.29 -0.27 -11.59 16
16 C 0.13 1.73 3.00 -66.36 -0.20 1.53 16
17 H 0.10 1.62 7.19 -51.93 -0.37 1.25 16
18 C -0.17 -1.94 6.88 -25.16 -0.17 -2.11 16
19 C 0.04 0.42 7.63 37.93 0.29 0.71 16
20 O -0.36 -4.20 10.70 -35.23 -0.38 -4.57 16
21 C 0.12 1.35 3.22 -27.10 -0.09 1.26 16
22 H 0.08 0.87 7.68 -51.93 -0.40 0.47 16
23 C -0.13 -1.65 4.95 -104.48 -0.52 -2.17 16
24 C -0.06 -0.67 9.84 -39.28 -0.39 -1.06 16
25 C -0.17 -1.80 10.11 -39.44 -0.40 -2.20 16
26 C 0.10 1.09 11.18 -17.55 -0.20 0.89 16
27 N -0.49 -6.52 10.36 -13.25 -0.14 -6.65 16
28 C 0.12 1.61 10.43 -17.55 -0.18 1.43 16
29 C -0.06 -1.31 9.47 -39.61 -0.38 -1.69 16
30 C -0.18 -4.19 8.63 -39.27 -0.34 -4.53 16
31 H 0.29 5.94 8.29 -40.82 -0.34 5.60 16
32 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16
33 H 0.10 2.25 7.63 -52.49 -0.40 1.85 16
34 H 0.40 5.37 6.39 -40.82 -0.26 5.11 16
35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16
36 H 0.09 1.06 7.96 -51.93 -0.41 0.64 16
37 H 0.10 0.74 8.14 -51.92 -0.42 0.32 16
38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16
39 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16
40 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16
41 H 0.16 1.27 8.06 -52.49 -0.42 0.84 16
42 H 0.16 1.89 7.78 -52.49 -0.41 1.48 16
43 H 0.09 1.52 6.37 -52.49 -0.33 1.18 16
44 H 0.12 2.86 6.15 -52.48 -0.32 2.54 16
LS Contribution 371.95 15.07 5.61 5.61
Total: -1.00 -29.22 371.95 -10.00 -39.22
By element:
Atomic # 1 Polarization: 18.97 SS G_CDS: -5.42 Total: 13.55 kcal
Atomic # 6 Polarization: -11.93 SS G_CDS: -5.06 Total: -17.00 kcal
Atomic # 7 Polarization: -35.69 SS G_CDS: 0.20 Total: -35.48 kcal
Atomic # 8 Polarization: -17.33 SS G_CDS: -0.29 Total: -17.63 kcal
Atomic # 14 Polarization: 16.77 SS G_CDS: -5.03 Total: 11.74 kcal
Total LS contribution 5.61 Total: 5.61 kcal
Total: -29.22 -10.00 -39.22 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000346214757.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 9.690 kcal
(2) G-P(sol) polarization free energy of solvation -29.220 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.530 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.001 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.221 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.531 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.02 seconds