Wall clock time and date at job start Tue Mar 31 2020 20:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86806 * 119.99715 * 2 1 4 4 H 1.48493 * 109.47121 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46976 * 300.00422 * 3 2 1 6 6 H 1.48504 * 109.46853 * 60.00208 * 3 2 1 7 7 C 1.40226 * 120.00751 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00273 * 197.89739 * 7 2 1 9 9 C 1.41112 * 119.99390 * 17.89129 * 7 2 1 10 10 C 1.40891 * 120.10231 * 204.63608 * 9 7 2 11 11 C 1.36317 * 119.89032 * 179.97438 * 10 9 7 12 12 C 1.40013 * 120.10770 * 359.97438 * 11 10 9 13 13 C 1.47642 * 119.89499 * 180.02562 * 12 11 10 14 14 O 1.21584 * 119.99996 * 359.97438 * 13 12 11 15 15 N 1.34771 * 119.99834 * 179.97438 * 13 12 11 16 16 C 1.46507 * 119.99919 * 179.97438 * 15 13 12 17 17 H 1.09003 * 110.55949 * 32.32069 * 16 15 13 18 18 C 1.54507 * 110.50845 * 269.64145 * 16 15 13 19 19 C 1.54479 * 104.05995 * 241.35245 * 18 16 15 20 20 O 1.44422 * 104.80726 * 336.02363 * 19 18 16 21 21 C 1.44425 * 105.27178 * 40.51138 * 20 19 18 22 22 H 1.09004 * 110.37305 * 78.43260 * 21 20 19 23 23 C 1.50708 * 110.37351 * 200.65917 * 21 20 19 24 24 C 1.38664 * 120.41852 * 218.56995 * 23 21 20 25 25 C 1.38627 * 118.42100 * 179.97438 * 24 23 21 26 26 C 1.38228 * 119.16254 * 0.02562 * 25 24 23 27 27 N 1.31853 * 120.75956 * 0.02562 * 26 25 24 28 28 C 1.31889 * 121.73080 * 359.97438 * 27 26 25 29 29 C 1.40011 * 120.21033 * 0.26598 * 12 11 10 30 30 C 1.36325 * 120.10330 * 359.49187 * 29 12 11 31 31 H 0.96995 * 120.00304 * 359.97438 * 1 2 3 32 32 H 1.07999 * 120.05381 * 359.96406 * 10 9 7 33 33 H 1.08000 * 119.94169 * 180.02562 * 11 10 9 34 34 H 0.96999 * 120.00608 * 359.97438 * 15 13 12 35 35 H 1.08998 * 110.50765 * 122.71403 * 18 16 15 36 36 H 1.08992 * 110.51748 * 359.97438 * 18 16 15 37 37 H 1.09007 * 110.37434 * 217.19471 * 19 18 16 38 38 H 1.09003 * 110.37548 * 94.85911 * 19 18 16 39 39 H 1.08000 * 120.79159 * 0.02562 * 24 23 21 40 40 H 1.08007 * 120.42329 * 179.97438 * 25 24 23 41 41 H 1.08001 * 119.62194 * 180.02562 * 26 25 24 42 42 H 1.07994 * 119.61779 * 179.97438 * 28 27 26 43 43 H 1.07995 * 119.95120 * 179.72699 * 29 12 11 44 44 H 1.08007 * 120.05047 * 180.25429 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.7003 1.3466 -0.0006 5 1 1.8815 2.3965 -1.2125 6 1 1.8816 2.3965 1.2126 7 6 2.0077 -1.2143 -0.0005 8 1 3.0485 -1.2370 0.2869 9 6 1.3534 -2.4067 -0.3765 10 6 1.8269 -3.6494 0.0886 11 6 1.1911 -4.7986 -0.2769 12 6 0.0691 -4.7451 -1.1127 13 6 -0.6162 -5.9926 -1.5051 14 8 -0.2058 -7.0641 -1.1030 15 7 -1.6968 -5.9436 -2.3091 16 6 -2.3765 -7.1815 -2.6990 17 1 -2.3103 -7.9220 -1.9018 18 6 -1.7752 -7.7399 -4.0081 19 6 -2.9597 -7.7292 -4.9997 20 8 -4.1387 -7.7752 -4.1668 21 6 -3.8531 -6.8993 -3.0545 22 1 -3.9819 -5.8577 -3.3489 23 6 -4.7460 -7.2274 -1.8857 24 6 -5.2665 -6.2150 -1.0939 25 6 -6.0836 -6.5636 -0.0297 26 6 -6.3500 -7.8994 0.2055 27 7 -5.8367 -8.8358 -0.5679 28 6 -5.0555 -8.5410 -1.5889 29 6 -0.4022 -3.5129 -1.5815 30 6 0.2240 -2.3580 -1.2174 31 1 -0.4850 0.8400 0.0004 32 1 2.6921 -3.6916 0.7335 33 1 1.5531 -5.7516 0.0795 34 1 -2.0245 -5.0887 -2.6296 35 1 -1.4119 -8.7566 -3.8582 36 1 -0.9726 -7.0949 -4.3655 37 1 -2.9193 -8.6041 -5.6487 38 1 -2.9496 -6.8149 -5.5930 39 1 -5.0413 -5.1794 -1.3018 40 1 -6.5060 -5.8012 0.6082 41 1 -6.9860 -8.1794 1.0323 42 1 -4.6532 -9.3354 -2.1999 43 1 -1.2654 -3.4769 -2.2295 44 1 -0.1427 -1.4076 -1.5762 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346214757.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:33 Heat of formation + Delta-G solvation = -29.530614 kcal Electronic energy + Delta-G solvation = -28119.621986 eV Core-core repulsion = 24194.166488 eV Total energy + Delta-G solvation = -3925.455498 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.78848 -39.57372 -38.62413 -37.11354 -34.34330 -33.94273 -33.08210 -31.85406 -31.14673 -29.90682 -29.50963 -27.94445 -25.90932 -24.11195 -23.57288 -22.46523 -21.87184 -21.18159 -20.70841 -19.67546 -17.61280 -17.49344 -17.19807 -16.82377 -16.44473 -16.04222 -15.55166 -14.99181 -14.78031 -14.55978 -14.09718 -14.07878 -14.00093 -13.71680 -13.43130 -13.30771 -13.17738 -12.84808 -12.67018 -12.31771 -12.18320 -11.96996 -11.75957 -11.44607 -11.43427 -11.32940 -11.04759 -10.95852 -10.71791 -10.20752 -10.10569 -9.90807 -9.63670 -9.54695 -9.42080 -9.21575 -9.06687 -8.68905 -7.79856 -7.61945 -7.10770 -4.67229 0.93505 1.15932 2.14503 2.85146 2.90658 2.96042 2.96873 3.34106 3.60874 3.68443 3.75956 3.94101 4.25698 4.41630 4.47008 4.56184 4.67758 4.80863 4.85726 4.87656 4.95183 5.07568 5.16788 5.36545 5.49661 5.53779 5.58028 5.67642 5.76337 5.92221 5.95410 5.96910 6.05657 6.09864 6.24857 6.44602 6.56142 6.70107 6.75849 6.83005 6.97524 7.05945 7.36315 7.56790 7.70359 7.79118 7.85086 7.99934 8.10660 8.32878 8.56255 8.67999 8.96336 9.81099 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.014098 B = 0.002677 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.688363 B =10458.698564 C =11183.604203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.074 3.926 3 Si 0.913 3.087 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.440 4.440 8 H 0.086 0.914 9 C 0.129 3.871 10 C -0.239 4.239 11 C -0.021 4.021 12 C -0.286 4.286 13 C 0.574 3.426 14 O -0.571 6.571 15 N -0.733 5.733 16 C 0.128 3.872 17 H 0.102 0.898 18 C -0.168 4.168 19 C 0.045 3.955 20 O -0.362 6.362 21 C 0.116 3.884 22 H 0.084 0.916 23 C -0.133 4.133 24 C -0.059 4.059 25 C -0.172 4.172 26 C 0.097 3.903 27 N -0.487 5.487 28 C 0.124 3.876 29 C -0.062 4.062 30 C -0.178 4.178 31 H 0.286 0.714 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.397 0.603 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.063 0.937 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.155 0.845 42 H 0.158 0.842 43 H 0.087 0.913 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.006 -6.181 -6.356 13.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.147 4.147 3 Si 0.736 3.264 4 H -0.180 1.180 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.468 4.468 8 H 0.104 0.896 9 C 0.125 3.875 10 C -0.258 4.258 11 C -0.040 4.040 12 C -0.291 4.291 13 C 0.370 3.630 14 O -0.452 6.452 15 N -0.387 5.387 16 C 0.021 3.979 17 H 0.120 0.880 18 C -0.207 4.207 19 C -0.032 4.032 20 O -0.280 6.280 21 C 0.057 3.943 22 H 0.102 0.898 23 C -0.135 4.135 24 C -0.085 4.085 25 C -0.192 4.192 26 C -0.059 4.059 27 N -0.195 5.195 28 C -0.033 4.033 29 C -0.082 4.082 30 C -0.197 4.197 31 H 0.098 0.902 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.233 0.767 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.114 0.886 38 H 0.081 0.919 39 H 0.155 0.845 40 H 0.155 0.845 41 H 0.173 0.827 42 H 0.175 0.825 43 H 0.105 0.895 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.326 -7.793 -5.907 14.221 hybrid contribution 0.492 2.329 -0.270 2.396 sum -9.834 -5.463 -6.177 12.834 Atomic orbital electron populations 1.69742 1.07939 1.30026 1.31637 1.26108 0.94817 1.01946 0.91843 0.86169 0.81149 0.80137 0.78909 1.18023 1.19349 1.19619 1.19902 0.98485 0.91190 1.37220 0.89623 1.17794 0.90353 0.92179 0.87134 1.20723 1.04625 0.92631 1.07835 1.20360 0.92859 0.97163 0.93601 1.18847 1.04596 0.90876 1.14741 1.18609 0.78553 0.89730 0.76136 1.90645 1.66192 1.31676 1.56713 1.45895 1.31827 1.07960 1.53025 1.22133 0.89294 0.88916 0.97524 0.88011 1.23411 0.98852 1.03248 0.95181 1.23472 0.83819 1.02419 0.93505 1.89176 1.37557 1.66372 1.34917 1.21886 0.92316 0.94874 0.85241 0.89794 1.20512 1.00078 0.95332 0.97612 1.21443 0.93765 0.99684 0.93616 1.22127 1.00068 0.98158 0.98811 1.22821 0.96647 0.89071 0.97404 1.67746 1.09182 1.37810 1.04788 1.22607 0.92854 0.94957 0.92891 1.20444 0.97345 0.92589 0.97787 1.20974 0.99909 0.96896 1.01947 0.90236 0.88356 0.88128 0.76717 0.89853 0.89488 0.88608 0.91873 0.84544 0.84466 0.82723 0.82456 0.89460 0.86189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.85 10.95 55.56 0.61 -17.24 16 2 C 0.07 1.68 5.14 -17.31 -0.09 1.59 16 3 Si 0.91 16.77 29.60 -169.99 -5.03 11.74 16 4 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 5 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 6 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 7 C -0.44 -10.66 9.04 -37.75 -0.34 -11.00 16 8 H 0.09 1.99 7.91 -52.49 -0.42 1.57 16 9 C 0.13 3.18 5.58 -106.80 -0.60 2.58 16 10 C -0.24 -5.63 9.73 -39.27 -0.38 -6.02 16 11 C -0.02 -0.47 9.52 -39.61 -0.38 -0.85 16 12 C -0.29 -6.26 5.89 -104.73 -0.62 -6.88 16 13 C 0.57 11.60 7.76 -12.42 -0.10 11.51 16 14 O -0.57 -13.14 15.97 5.29 0.08 -13.05 16 15 N -0.73 -11.32 5.00 -53.29 -0.27 -11.59 16 16 C 0.13 1.73 3.00 -66.36 -0.20 1.53 16 17 H 0.10 1.62 7.19 -51.93 -0.37 1.25 16 18 C -0.17 -1.94 6.88 -25.16 -0.17 -2.11 16 19 C 0.04 0.42 7.63 37.93 0.29 0.71 16 20 O -0.36 -4.20 10.70 -35.23 -0.38 -4.57 16 21 C 0.12 1.35 3.22 -27.10 -0.09 1.26 16 22 H 0.08 0.87 7.68 -51.93 -0.40 0.47 16 23 C -0.13 -1.65 4.95 -104.48 -0.52 -2.17 16 24 C -0.06 -0.67 9.84 -39.28 -0.39 -1.06 16 25 C -0.17 -1.80 10.11 -39.44 -0.40 -2.20 16 26 C 0.10 1.09 11.18 -17.55 -0.20 0.89 16 27 N -0.49 -6.52 10.36 -13.25 -0.14 -6.65 16 28 C 0.12 1.61 10.43 -17.55 -0.18 1.43 16 29 C -0.06 -1.31 9.47 -39.61 -0.38 -1.69 16 30 C -0.18 -4.19 8.63 -39.27 -0.34 -4.53 16 31 H 0.29 5.94 8.29 -40.82 -0.34 5.60 16 32 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 33 H 0.10 2.25 7.63 -52.49 -0.40 1.85 16 34 H 0.40 5.37 6.39 -40.82 -0.26 5.11 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.09 1.06 7.96 -51.93 -0.41 0.64 16 37 H 0.10 0.74 8.14 -51.92 -0.42 0.32 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 41 H 0.16 1.27 8.06 -52.49 -0.42 0.84 16 42 H 0.16 1.89 7.78 -52.49 -0.41 1.48 16 43 H 0.09 1.52 6.37 -52.49 -0.33 1.18 16 44 H 0.12 2.86 6.15 -52.48 -0.32 2.54 16 LS Contribution 371.95 15.07 5.61 5.61 Total: -1.00 -29.22 371.95 -10.00 -39.22 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -5.42 Total: 13.55 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -5.06 Total: -17.00 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: 0.20 Total: -35.48 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.29 Total: -17.63 kcal Atomic # 14 Polarization: 16.77 SS G_CDS: -5.03 Total: 11.74 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.22 -10.00 -39.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346214757.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.690 kcal (2) G-P(sol) polarization free energy of solvation -29.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds