Wall clock time and date at job start Tue Mar 31 2020 20:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86806 * 119.99715 * 2 1 4 4 H 1.48493 * 109.47121 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46976 * 300.00422 * 3 2 1 6 6 H 1.48504 * 109.46853 * 60.00208 * 3 2 1 7 7 C 1.40226 * 120.00751 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00273 * 197.89739 * 7 2 1 9 9 C 1.41112 * 119.99390 * 17.89129 * 7 2 1 10 10 C 1.40891 * 120.10231 * 204.63608 * 9 7 2 11 11 C 1.36317 * 119.89032 * 179.97438 * 10 9 7 12 12 C 1.40013 * 120.10770 * 359.97438 * 11 10 9 13 13 C 1.47642 * 119.89499 * 180.02562 * 12 11 10 14 14 O 1.21584 * 119.99996 * 359.97438 * 13 12 11 15 15 N 1.34771 * 119.99834 * 179.97438 * 13 12 11 16 16 C 1.46507 * 119.99919 * 179.97438 * 15 13 12 17 17 H 1.09003 * 110.55949 * 32.32069 * 16 15 13 18 18 C 1.54507 * 110.50845 * 269.64145 * 16 15 13 19 19 C 1.54479 * 104.05995 * 241.35245 * 18 16 15 20 20 O 1.44422 * 104.80726 * 336.02363 * 19 18 16 21 21 C 1.44425 * 105.27178 * 40.51138 * 20 19 18 22 22 H 1.09004 * 110.37305 * 78.43260 * 21 20 19 23 23 C 1.50708 * 110.37351 * 200.65917 * 21 20 19 24 24 C 1.38664 * 120.41852 * 218.56995 * 23 21 20 25 25 C 1.38627 * 118.42100 * 179.97438 * 24 23 21 26 26 C 1.38228 * 119.16254 * 0.02562 * 25 24 23 27 27 N 1.31853 * 120.75956 * 0.02562 * 26 25 24 28 28 C 1.31889 * 121.73080 * 359.97438 * 27 26 25 29 29 C 1.40011 * 120.21033 * 0.26598 * 12 11 10 30 30 C 1.36325 * 120.10330 * 359.49187 * 29 12 11 31 31 H 0.96995 * 120.00304 * 359.97438 * 1 2 3 32 32 H 1.07999 * 120.05381 * 359.96406 * 10 9 7 33 33 H 1.08000 * 119.94169 * 180.02562 * 11 10 9 34 34 H 0.96999 * 120.00608 * 359.97438 * 15 13 12 35 35 H 1.08998 * 110.50765 * 122.71403 * 18 16 15 36 36 H 1.08992 * 110.51748 * 359.97438 * 18 16 15 37 37 H 1.09007 * 110.37434 * 217.19471 * 19 18 16 38 38 H 1.09003 * 110.37548 * 94.85911 * 19 18 16 39 39 H 1.08000 * 120.79159 * 0.02562 * 24 23 21 40 40 H 1.08007 * 120.42329 * 179.97438 * 25 24 23 41 41 H 1.08001 * 119.62194 * 180.02562 * 26 25 24 42 42 H 1.07994 * 119.61779 * 179.97438 * 28 27 26 43 43 H 1.07995 * 119.95120 * 179.72699 * 29 12 11 44 44 H 1.08007 * 120.05047 * 180.25429 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.7003 1.3466 -0.0006 5 1 1.8815 2.3965 -1.2125 6 1 1.8816 2.3965 1.2126 7 6 2.0077 -1.2143 -0.0005 8 1 3.0485 -1.2370 0.2869 9 6 1.3534 -2.4067 -0.3765 10 6 1.8269 -3.6494 0.0886 11 6 1.1911 -4.7986 -0.2769 12 6 0.0691 -4.7451 -1.1127 13 6 -0.6162 -5.9926 -1.5051 14 8 -0.2058 -7.0641 -1.1030 15 7 -1.6968 -5.9436 -2.3091 16 6 -2.3765 -7.1815 -2.6990 17 1 -2.3103 -7.9220 -1.9018 18 6 -1.7752 -7.7399 -4.0081 19 6 -2.9597 -7.7292 -4.9997 20 8 -4.1387 -7.7752 -4.1668 21 6 -3.8531 -6.8993 -3.0545 22 1 -3.9819 -5.8577 -3.3489 23 6 -4.7460 -7.2274 -1.8857 24 6 -5.2665 -6.2150 -1.0939 25 6 -6.0836 -6.5636 -0.0297 26 6 -6.3500 -7.8994 0.2055 27 7 -5.8367 -8.8358 -0.5679 28 6 -5.0555 -8.5410 -1.5889 29 6 -0.4022 -3.5129 -1.5815 30 6 0.2240 -2.3580 -1.2174 31 1 -0.4850 0.8400 0.0004 32 1 2.6921 -3.6916 0.7335 33 1 1.5531 -5.7516 0.0795 34 1 -2.0245 -5.0887 -2.6296 35 1 -1.4119 -8.7566 -3.8582 36 1 -0.9726 -7.0949 -4.3655 37 1 -2.9193 -8.6041 -5.6487 38 1 -2.9496 -6.8149 -5.5930 39 1 -5.0413 -5.1794 -1.3018 40 1 -6.5060 -5.8012 0.6082 41 1 -6.9860 -8.1794 1.0323 42 1 -4.6532 -9.3354 -2.1999 43 1 -1.2654 -3.4769 -2.2295 44 1 -0.1427 -1.4076 -1.5762 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346214757.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:32 Heat of formation + Delta-G solvation = -46.219271 kcal Electronic energy + Delta-G solvation = -28120.345661 eV Core-core repulsion = 24194.166488 eV Total energy + Delta-G solvation = -3926.179173 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.77543 -40.78040 -39.90744 -38.79493 -35.68739 -35.65072 -34.00517 -32.71652 -32.53288 -31.37573 -31.23090 -28.98639 -27.55423 -25.05713 -24.55198 -23.82214 -22.93276 -22.83539 -21.95887 -21.20105 -19.37330 -18.69913 -18.27812 -17.91020 -17.37248 -17.18493 -17.12082 -16.17778 -15.92459 -15.75047 -15.59286 -15.29870 -15.09194 -15.05051 -14.92373 -14.48055 -14.29497 -14.02750 -13.88574 -13.74791 -13.64564 -13.33837 -13.20429 -12.85590 -12.70306 -12.59398 -12.38941 -12.29502 -11.99386 -11.76047 -11.37476 -11.12617 -11.03656 -10.83121 -10.74919 -10.43611 -10.27954 -9.87202 -9.57556 -9.41132 -8.80140 -6.48648 0.05538 0.28010 0.42983 1.15035 1.38646 1.42239 1.55294 2.10190 2.15394 2.17606 2.65945 2.76998 2.98739 3.36931 3.50135 3.60212 3.69812 3.78325 3.95335 3.97117 4.05565 4.08832 4.17239 4.24414 4.31691 4.35476 4.43793 4.55674 4.70334 4.81537 4.82022 4.90674 4.92222 5.00559 5.03154 5.12457 5.15393 5.22239 5.29603 5.40571 5.58169 5.68141 5.75549 5.82071 5.93703 5.99146 6.22807 6.53773 6.64714 6.77103 6.88620 6.96143 7.40290 8.15072 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.014098 B = 0.002677 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.688363 B =10458.698564 C =11183.604203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.040 3.960 3 Si 0.985 3.015 4 H -0.259 1.259 5 H -0.259 1.259 6 H -0.264 1.264 7 C -0.473 4.473 8 H 0.083 0.917 9 C 0.102 3.898 10 C -0.254 4.254 11 C -0.033 4.033 12 C -0.293 4.293 13 C 0.577 3.423 14 O -0.604 6.604 15 N -0.712 5.712 16 C 0.125 3.875 17 H 0.074 0.926 18 C -0.165 4.165 19 C 0.049 3.951 20 O -0.371 6.371 21 C 0.127 3.873 22 H 0.104 0.896 23 C -0.146 4.146 24 C -0.070 4.070 25 C -0.170 4.170 26 C 0.087 3.913 27 N -0.513 5.513 28 C 0.106 3.894 29 C -0.050 4.050 30 C -0.197 4.197 31 H 0.297 0.703 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.410 0.590 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.116 0.884 38 H 0.081 0.919 39 H 0.155 0.845 40 H 0.166 0.834 41 H 0.182 0.818 42 H 0.157 0.843 43 H 0.127 0.873 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.422 -4.794 -7.468 14.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.179 4.179 3 Si 0.805 3.195 4 H -0.182 1.182 5 H -0.183 1.183 6 H -0.189 1.189 7 C -0.500 4.500 8 H 0.101 0.899 9 C 0.099 3.901 10 C -0.274 4.274 11 C -0.052 4.052 12 C -0.297 4.297 13 C 0.371 3.629 14 O -0.488 6.488 15 N -0.365 5.365 16 C 0.019 3.981 17 H 0.092 0.908 18 C -0.204 4.204 19 C -0.027 4.027 20 O -0.290 6.290 21 C 0.068 3.932 22 H 0.122 0.878 23 C -0.149 4.149 24 C -0.096 4.096 25 C -0.190 4.190 26 C -0.069 4.069 27 N -0.222 5.222 28 C -0.050 4.050 29 C -0.069 4.069 30 C -0.216 4.216 31 H 0.109 0.891 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.248 0.752 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.134 0.866 38 H 0.100 0.900 39 H 0.172 0.828 40 H 0.183 0.817 41 H 0.199 0.801 42 H 0.174 0.826 43 H 0.145 0.855 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.780 -6.414 -7.051 15.153 hybrid contribution 0.854 1.792 0.101 1.988 sum -10.926 -4.622 -6.950 13.749 Atomic orbital electron populations 1.69747 1.09114 1.31592 1.31389 1.26876 0.95552 1.04668 0.90847 0.85098 0.79429 0.75659 0.79292 1.18249 1.18333 1.18892 1.20135 0.98726 0.92300 1.38824 0.89881 1.18132 0.91324 0.92709 0.87923 1.20843 1.05187 0.92846 1.08487 1.20493 0.93615 0.96898 0.94218 1.19121 1.04290 0.92137 1.14168 1.18380 0.79450 0.88502 0.76603 1.90632 1.67433 1.32515 1.58184 1.45642 1.30168 1.09469 1.51260 1.22212 0.90951 0.87310 0.97636 0.90757 1.23365 0.99639 1.02832 0.94605 1.23608 0.81860 1.04401 0.92841 1.89185 1.38267 1.66525 1.34979 1.21798 0.90357 0.95841 0.85218 0.87831 1.20654 1.00594 0.95373 0.98241 1.21785 0.93741 1.00375 0.93673 1.22484 0.99288 0.98563 0.98629 1.23346 0.96576 0.89329 0.97656 1.67733 1.09976 1.39054 1.05461 1.22688 0.93496 0.95527 0.93327 1.20717 0.97784 0.91260 0.97172 1.21018 1.00379 0.97536 1.02665 0.89126 0.88069 0.88268 0.75247 0.90121 0.89807 0.86594 0.90046 0.82770 0.81656 0.80139 0.82621 0.85505 0.86678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -36.49 10.95 21.87 0.24 -36.25 16 2 C 0.04 1.79 5.14 85.35 0.44 2.23 16 3 Si 0.99 33.71 29.60 68.60 2.03 35.74 16 4 H -0.26 -8.85 7.11 99.48 0.71 -8.15 16 5 H -0.26 -8.41 7.11 99.48 0.71 -7.71 16 6 H -0.26 -8.70 7.11 99.48 0.71 -7.99 16 7 C -0.47 -23.29 9.04 23.46 0.21 -23.08 16 8 H 0.08 3.97 7.91 -2.91 -0.02 3.95 16 9 C 0.10 5.16 5.58 -21.28 -0.12 5.04 16 10 C -0.25 -12.37 9.73 22.47 0.22 -12.15 16 11 C -0.03 -1.55 9.52 22.25 0.21 -1.34 16 12 C -0.29 -12.73 5.89 -19.93 -0.12 -12.85 16 13 C 0.58 23.00 7.76 86.73 0.67 23.67 16 14 O -0.60 -28.06 15.97 -3.98 -0.06 -28.12 16 15 N -0.71 -20.85 5.00 -440.77 -2.20 -23.05 16 16 C 0.12 3.24 3.00 46.00 0.14 3.38 16 17 H 0.07 2.40 7.19 -2.39 -0.02 2.38 16 18 C -0.17 -3.59 6.88 31.61 0.22 -3.37 16 19 C 0.05 0.80 7.63 72.48 0.55 1.36 16 20 O -0.37 -7.84 10.70 -148.98 -1.59 -9.44 16 21 C 0.13 2.71 3.22 30.35 0.10 2.81 16 22 H 0.10 1.81 7.68 -2.39 -0.02 1.80 16 23 C -0.15 -3.46 4.95 -19.77 -0.10 -3.56 16 24 C -0.07 -1.46 9.84 22.46 0.22 -1.24 16 25 C -0.17 -3.21 10.11 22.36 0.23 -2.98 16 26 C 0.09 1.83 11.18 84.69 0.95 2.78 16 27 N -0.51 -13.57 10.36 -195.84 -2.03 -15.60 16 28 C 0.11 2.75 10.43 84.67 0.88 3.63 16 29 C -0.05 -2.06 9.47 22.25 0.21 -1.85 16 30 C -0.20 -9.25 8.63 22.47 0.19 -9.05 16 31 H 0.30 12.03 8.29 -92.71 -0.77 11.26 16 32 H 0.10 4.67 8.06 -2.91 -0.02 4.65 16 33 H 0.10 4.59 7.63 -2.91 -0.02 4.57 16 34 H 0.41 9.91 6.39 -92.71 -0.59 9.31 16 35 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.08 1.89 7.96 -2.39 -0.02 1.87 16 37 H 0.12 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 40 H 0.17 2.09 8.06 -2.91 -0.02 2.06 16 41 H 0.18 2.61 8.06 -2.91 -0.02 2.59 16 42 H 0.16 3.84 7.78 -2.91 -0.02 3.81 16 43 H 0.13 4.04 6.37 -2.91 -0.02 4.02 16 44 H 0.12 5.47 6.15 -2.91 -0.02 5.45 16 Total: -1.00 -64.54 371.95 1.94 -62.60 By element: Atomic # 1 Polarization: 40.24 SS G_CDS: 0.45 Total: 40.69 kcal Atomic # 6 Polarization: -31.67 SS G_CDS: 5.11 Total: -26.56 kcal Atomic # 7 Polarization: -70.91 SS G_CDS: -3.99 Total: -74.90 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -1.66 Total: -37.56 kcal Atomic # 14 Polarization: 33.71 SS G_CDS: 2.03 Total: 35.74 kcal Total: -64.54 1.94 -62.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346214757.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.380 kcal (2) G-P(sol) polarization free energy of solvation -64.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds