Wall clock time and date at job start Tue Mar 31 2020 20:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86803 * 119.99975 * 2 1 4 4 H 1.48508 * 109.47108 * 264.95887 * 3 2 1 5 5 H 1.48497 * 109.47116 * 24.95820 * 3 2 1 6 6 H 1.48500 * 109.47150 * 144.96112 * 3 2 1 7 7 C 1.38893 * 120.00328 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99447 * 337.75410 * 7 2 1 9 9 N 1.37134 * 120.00240 * 157.75062 * 7 2 1 10 10 C 1.34780 * 119.99831 * 152.04788 * 9 7 2 11 11 O 1.21278 * 120.00158 * 174.61116 * 10 9 7 12 12 C 1.50701 * 119.99884 * 354.33663 * 10 9 7 13 13 C 1.53004 * 109.46883 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.46883 * 179.97438 * 13 12 10 15 15 C 1.37981 * 120.07687 * 98.44145 * 14 13 12 16 16 C 1.38332 * 120.14694 * 179.97438 * 15 14 13 17 17 C 1.38386 * 120.29025 * 0.02633 * 16 15 14 18 18 C 1.37929 * 120.14871 * 359.96666 * 17 16 15 19 19 C 1.39563 * 120.07130 * 278.16271 * 14 13 12 20 20 C 1.47846 * 120.14242 * 0.02562 * 19 14 13 21 21 N 1.34777 * 119.99634 * 185.60322 * 20 19 14 22 22 O 1.21547 * 120.00384 * 5.60505 * 20 19 14 23 23 C 1.39787 * 120.00097 * 332.05170 * 9 7 2 24 24 C 1.38963 * 120.07484 * 119.30199 * 23 9 7 25 25 C 1.38085 * 119.91927 * 179.79000 * 24 23 9 26 26 C 1.38311 * 120.07526 * 0.46508 * 25 24 23 27 27 C 1.38308 * 120.15812 * 359.78666 * 26 25 24 28 28 C 1.38084 * 120.07774 * 359.97438 * 27 26 25 29 29 H 0.96997 * 120.00320 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.46875 * 299.99613 * 12 10 9 31 31 H 1.08995 * 109.47154 * 60.00047 * 12 10 9 32 32 H 1.09002 * 109.47044 * 299.99503 * 13 12 10 33 33 H 1.09001 * 109.47394 * 59.99695 * 13 12 10 34 34 H 1.07996 * 119.92189 * 0.02562 * 15 14 13 35 35 H 1.07999 * 119.85790 * 179.97438 * 16 15 14 36 36 H 1.07997 * 119.92436 * 179.97438 * 17 16 15 37 37 H 1.07997 * 120.07665 * 180.02562 * 18 17 16 38 38 H 0.97005 * 120.00144 * 359.97438 * 21 20 19 39 39 H 0.96999 * 120.00208 * 180.02562 * 21 20 19 40 40 H 1.07995 * 120.04020 * 359.97438 * 24 23 9 41 41 H 1.07999 * 119.96328 * 180.24939 * 25 24 23 42 42 H 1.08006 * 119.91928 * 179.76818 * 26 25 24 43 43 H 1.08000 * 119.96184 * 179.97438 * 27 26 25 44 44 H 1.07994 * 120.03917 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.6022 1.9850 -1.3947 5 1 1.3964 2.6811 0.5908 6 1 3.4884 1.4733 0.8038 7 6 2.0087 -1.2028 0.0005 8 1 1.5290 -2.1031 0.3550 9 7 3.3035 -1.2472 -0.4491 10 6 4.1524 -2.1770 0.0320 11 8 5.2670 -2.2799 -0.4348 12 6 3.7186 -3.0847 1.1541 13 6 4.8609 -4.0389 1.5086 14 6 4.4274 -4.9461 2.6311 15 6 3.9779 -6.2212 2.3554 16 6 3.5801 -7.0554 3.3847 17 6 3.6295 -6.6176 4.6966 18 6 4.0769 -5.3454 4.9860 19 6 4.4852 -4.5005 3.9524 20 6 4.9710 -3.1374 4.2557 21 7 5.1327 -2.7491 5.5361 22 8 5.2245 -2.3671 3.3503 23 6 3.7429 -0.3281 -1.4063 24 6 4.7845 0.5424 -1.1093 25 6 5.2189 1.4461 -2.0587 26 6 4.6121 1.4919 -3.3007 27 6 3.5716 0.6305 -3.5980 28 6 3.1354 -0.2790 -2.6551 29 1 -0.4850 0.8400 -0.0004 30 1 3.4620 -2.4853 2.0276 31 1 2.8481 -3.6603 0.8398 32 1 5.1180 -4.6382 0.6352 33 1 5.7313 -3.4628 1.8229 34 1 3.9374 -6.5689 1.3337 35 1 3.2287 -8.0523 3.1635 36 1 3.3171 -7.2737 5.4955 37 1 4.1153 -5.0051 6.0102 38 1 4.9301 -3.3637 6.2587 39 1 5.4511 -1.8547 5.7352 40 1 5.2557 0.5102 -0.1381 41 1 6.0310 2.1203 -1.8300 42 1 4.9514 2.2023 -4.0402 43 1 3.0998 0.6693 -4.5687 44 1 2.3226 -0.9511 -2.8877 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348171898.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:30 Heat of formation + Delta-G solvation = -2.861377 kcal Electronic energy + Delta-G solvation = -29128.445381 eV Core-core repulsion = 25204.146347 eV Total energy + Delta-G solvation = -3924.299034 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.36571 -39.63816 -38.08228 -37.59077 -34.88841 -34.23379 -33.07481 -32.00878 -30.92001 -30.23142 -29.97715 -28.61774 -25.14405 -24.56937 -23.69378 -22.01347 -21.81811 -21.10518 -20.34346 -18.84562 -17.95975 -17.76505 -16.78235 -16.35997 -15.82068 -15.54872 -15.33731 -15.09479 -14.98745 -14.73946 -14.50386 -13.93652 -13.77126 -13.68179 -13.33250 -12.90963 -12.82511 -12.72865 -12.67318 -12.36368 -12.17507 -11.88981 -11.69257 -11.28551 -11.01142 -10.91609 -10.77450 -10.58857 -10.45766 -10.38956 -9.89666 -9.66601 -9.42006 -9.23202 -9.03156 -8.81814 -8.60297 -8.32269 -8.17193 -7.52858 -6.48137 -4.03005 0.85006 1.31372 2.01412 2.11398 2.95502 3.25274 3.37207 3.43573 3.52262 3.77136 3.83185 4.25176 4.37912 4.51025 4.70110 4.75962 4.82541 5.01265 5.10001 5.29780 5.41224 5.54573 5.61692 5.66321 5.74445 5.79507 5.89925 5.95695 6.09654 6.14414 6.24579 6.28073 6.32984 6.37093 6.44761 6.55667 6.69921 6.71908 6.84609 6.91750 6.98865 7.02821 7.16207 7.27361 7.35104 7.37328 7.70472 8.01749 8.31674 8.35963 8.92862 9.33460 9.66420 10.60379 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.015018 B = 0.003583 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.007229 B = 7812.551311 C = 7973.954168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.076 3.924 3 Si 0.857 3.143 4 H -0.252 1.252 5 H -0.294 1.294 6 H -0.261 1.261 7 C -0.347 4.347 8 H 0.112 0.888 9 N -0.428 5.428 10 C 0.491 3.509 11 O -0.579 6.579 12 C -0.098 4.098 13 C -0.075 4.075 14 C -0.009 4.009 15 C -0.126 4.126 16 C -0.091 4.091 17 C -0.140 4.140 18 C -0.086 4.086 19 C -0.140 4.140 20 C 0.553 3.447 21 N -0.857 5.857 22 O -0.509 6.509 23 C 0.165 3.835 24 C -0.129 4.129 25 C -0.116 4.116 26 C -0.145 4.145 27 C -0.114 4.114 28 C -0.115 4.115 29 H 0.276 0.724 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.103 0.897 34 H 0.130 0.870 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.396 0.604 39 H 0.403 0.597 40 H 0.118 0.882 41 H 0.115 0.885 42 H 0.113 0.887 43 H 0.117 0.883 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.183 -8.755 8.933 13.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.132 4.132 3 Si 0.683 3.317 4 H -0.176 1.176 5 H -0.221 1.221 6 H -0.186 1.186 7 C -0.472 4.472 8 H 0.130 0.870 9 N -0.144 5.144 10 C 0.283 3.717 11 O -0.462 6.462 12 C -0.138 4.138 13 C -0.112 4.112 14 C -0.010 4.010 15 C -0.144 4.144 16 C -0.109 4.109 17 C -0.158 4.158 18 C -0.104 4.104 19 C -0.143 4.143 20 C 0.339 3.661 21 N -0.422 5.422 22 O -0.384 6.384 23 C 0.072 3.928 24 C -0.149 4.149 25 C -0.135 4.135 26 C -0.164 4.164 27 C -0.133 4.133 28 C -0.135 4.135 29 H 0.086 0.914 30 H 0.115 0.885 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.121 0.879 34 H 0.148 0.852 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.225 0.775 39 H 0.234 0.766 40 H 0.136 0.864 41 H 0.133 0.867 42 H 0.131 0.869 43 H 0.135 0.865 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.632 -8.378 8.016 13.358 hybrid contribution -0.040 0.973 0.784 1.250 sum 6.592 -7.405 8.801 13.257 Atomic orbital electron populations 1.69765 1.06260 1.28383 1.44637 1.25176 0.95051 0.98487 0.94489 0.87199 0.80227 0.83217 0.81037 1.17612 1.22148 1.18557 1.19135 0.85648 0.97357 1.45110 0.87029 1.41596 1.11395 1.27919 1.33474 1.20507 0.83885 0.83470 0.83851 1.90558 1.20938 1.73121 1.61619 1.21198 0.97505 0.96792 0.98312 1.20645 1.00216 0.96003 0.94330 1.20232 0.92844 0.94245 0.93661 1.21158 0.99931 0.93466 0.99878 1.21341 0.97257 0.99553 0.92787 1.21011 1.01871 0.96052 0.96861 1.21212 0.97338 0.93881 0.98001 1.19775 1.05851 0.94520 0.94162 1.18351 0.77554 0.87316 0.82879 1.43770 1.71636 1.19188 1.07565 1.90919 1.49046 1.54067 1.44374 1.17717 0.94228 0.91596 0.89256 1.21185 0.98487 0.95449 0.99767 1.20830 0.99933 0.98972 0.93762 1.20904 0.98043 1.00519 0.96907 1.20886 0.97322 0.96242 0.98845 1.21173 1.00922 0.99620 0.91797 0.91423 0.88489 0.90457 0.91353 0.87885 0.85162 0.85701 0.85725 0.85924 0.77487 0.76565 0.86409 0.86673 0.86886 0.86539 0.85550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.15 13.96 55.49 0.77 -23.37 16 2 C 0.08 2.10 5.17 -17.49 -0.09 2.00 16 3 Si 0.86 21.76 23.56 -169.99 -4.00 17.75 16 4 H -0.25 -6.23 5.26 56.52 0.30 -5.94 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 6 H -0.26 -6.78 6.33 56.52 0.36 -6.42 16 7 C -0.35 -9.38 9.07 -14.94 -0.14 -9.51 16 8 H 0.11 3.07 6.93 -52.49 -0.36 2.70 16 9 N -0.43 -11.05 2.48 -58.98 -0.15 -11.20 16 10 C 0.49 12.20 7.44 -10.98 -0.08 12.11 16 11 O -0.58 -15.33 15.50 5.56 0.09 -15.24 16 12 C -0.10 -2.07 3.91 -27.88 -0.11 -2.18 16 13 C -0.07 -1.36 3.90 -27.88 -0.11 -1.47 16 14 C -0.01 -0.13 5.17 -104.22 -0.54 -0.67 16 15 C -0.13 -1.57 9.66 -39.64 -0.38 -1.95 16 16 C -0.09 -0.92 10.04 -39.49 -0.40 -1.31 16 17 C -0.14 -1.30 10.03 -39.64 -0.40 -1.70 16 18 C -0.09 -0.86 9.53 -39.19 -0.37 -1.24 16 19 C -0.14 -1.90 5.87 -104.96 -0.62 -2.52 16 20 C 0.55 8.14 7.91 -12.33 -0.10 8.04 16 21 N -0.86 -8.42 8.82 30.53 0.27 -8.15 16 22 O -0.51 -9.89 12.43 5.32 0.07 -9.82 16 23 C 0.16 4.08 2.32 -83.70 -0.19 3.89 16 24 C -0.13 -3.03 5.91 -39.37 -0.23 -3.26 16 25 C -0.12 -2.33 9.59 -39.61 -0.38 -2.71 16 26 C -0.15 -2.69 9.76 -39.53 -0.39 -3.07 16 27 C -0.11 -2.23 9.65 -39.61 -0.38 -2.61 16 28 C -0.12 -2.63 8.42 -39.37 -0.33 -2.96 16 29 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.10 2.17 6.58 -51.93 -0.34 1.83 16 31 H 0.08 1.55 7.47 -51.93 -0.39 1.17 16 32 H 0.07 1.21 7.98 -51.93 -0.41 0.80 16 33 H 0.10 2.10 5.91 -51.93 -0.31 1.79 16 34 H 0.13 1.46 8.05 -52.49 -0.42 1.03 16 35 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.12 0.82 6.45 -52.49 -0.34 0.48 16 38 H 0.40 2.52 6.90 -40.82 -0.28 2.23 16 39 H 0.40 3.61 8.93 -40.82 -0.36 3.24 16 40 H 0.12 2.87 7.82 -52.49 -0.41 2.46 16 41 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 42 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 43 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 44 H 0.13 2.87 8.06 -52.49 -0.42 2.44 16 LS Contribution 358.47 15.07 5.40 5.40 Total: -1.00 -34.60 358.47 -8.24 -42.84 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -5.45 Total: 12.91 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -5.23 Total: -11.11 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 0.90 Total: -42.72 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: 0.15 Total: -25.06 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.00 Total: 17.75 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.60 -8.24 -42.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348171898.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.976 kcal (2) G-P(sol) polarization free energy of solvation -34.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds