Wall clock time and date at job start Tue Mar 31 2020 20:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86803 * 119.99975 * 2 1 4 4 H 1.48508 * 109.47108 * 264.95887 * 3 2 1 5 5 H 1.48497 * 109.47116 * 24.95820 * 3 2 1 6 6 H 1.48500 * 109.47150 * 144.96112 * 3 2 1 7 7 C 1.38893 * 120.00328 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99447 * 337.75410 * 7 2 1 9 9 N 1.37134 * 120.00240 * 157.75062 * 7 2 1 10 10 C 1.34780 * 119.99831 * 152.04788 * 9 7 2 11 11 O 1.21278 * 120.00158 * 174.61116 * 10 9 7 12 12 C 1.50701 * 119.99884 * 354.33663 * 10 9 7 13 13 C 1.53004 * 109.46883 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.46883 * 179.97438 * 13 12 10 15 15 C 1.37981 * 120.07687 * 98.44145 * 14 13 12 16 16 C 1.38332 * 120.14694 * 179.97438 * 15 14 13 17 17 C 1.38386 * 120.29025 * 0.02633 * 16 15 14 18 18 C 1.37929 * 120.14871 * 359.96666 * 17 16 15 19 19 C 1.39563 * 120.07130 * 278.16271 * 14 13 12 20 20 C 1.47846 * 120.14242 * 0.02562 * 19 14 13 21 21 N 1.34777 * 119.99634 * 185.60322 * 20 19 14 22 22 O 1.21547 * 120.00384 * 5.60505 * 20 19 14 23 23 C 1.39787 * 120.00097 * 332.05170 * 9 7 2 24 24 C 1.38963 * 120.07484 * 119.30199 * 23 9 7 25 25 C 1.38085 * 119.91927 * 179.79000 * 24 23 9 26 26 C 1.38311 * 120.07526 * 0.46508 * 25 24 23 27 27 C 1.38308 * 120.15812 * 359.78666 * 26 25 24 28 28 C 1.38084 * 120.07774 * 359.97438 * 27 26 25 29 29 H 0.96997 * 120.00320 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.46875 * 299.99613 * 12 10 9 31 31 H 1.08995 * 109.47154 * 60.00047 * 12 10 9 32 32 H 1.09002 * 109.47044 * 299.99503 * 13 12 10 33 33 H 1.09001 * 109.47394 * 59.99695 * 13 12 10 34 34 H 1.07996 * 119.92189 * 0.02562 * 15 14 13 35 35 H 1.07999 * 119.85790 * 179.97438 * 16 15 14 36 36 H 1.07997 * 119.92436 * 179.97438 * 17 16 15 37 37 H 1.07997 * 120.07665 * 180.02562 * 18 17 16 38 38 H 0.97005 * 120.00144 * 359.97438 * 21 20 19 39 39 H 0.96999 * 120.00208 * 180.02562 * 21 20 19 40 40 H 1.07995 * 120.04020 * 359.97438 * 24 23 9 41 41 H 1.07999 * 119.96328 * 180.24939 * 25 24 23 42 42 H 1.08006 * 119.91928 * 179.76818 * 26 25 24 43 43 H 1.08000 * 119.96184 * 179.97438 * 27 26 25 44 44 H 1.07994 * 120.03917 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.6022 1.9850 -1.3947 5 1 1.3964 2.6811 0.5908 6 1 3.4884 1.4733 0.8038 7 6 2.0087 -1.2028 0.0005 8 1 1.5290 -2.1031 0.3550 9 7 3.3035 -1.2472 -0.4491 10 6 4.1524 -2.1770 0.0320 11 8 5.2670 -2.2799 -0.4348 12 6 3.7186 -3.0847 1.1541 13 6 4.8609 -4.0389 1.5086 14 6 4.4274 -4.9461 2.6311 15 6 3.9779 -6.2212 2.3554 16 6 3.5801 -7.0554 3.3847 17 6 3.6295 -6.6176 4.6966 18 6 4.0769 -5.3454 4.9860 19 6 4.4852 -4.5005 3.9524 20 6 4.9710 -3.1374 4.2557 21 7 5.1327 -2.7491 5.5361 22 8 5.2245 -2.3671 3.3503 23 6 3.7429 -0.3281 -1.4063 24 6 4.7845 0.5424 -1.1093 25 6 5.2189 1.4461 -2.0587 26 6 4.6121 1.4919 -3.3007 27 6 3.5716 0.6305 -3.5980 28 6 3.1354 -0.2790 -2.6551 29 1 -0.4850 0.8400 -0.0004 30 1 3.4620 -2.4853 2.0276 31 1 2.8481 -3.6603 0.8398 32 1 5.1180 -4.6382 0.6352 33 1 5.7313 -3.4628 1.8229 34 1 3.9374 -6.5689 1.3337 35 1 3.2287 -8.0523 3.1635 36 1 3.3171 -7.2737 5.4955 37 1 4.1153 -5.0051 6.0102 38 1 4.9301 -3.3637 6.2587 39 1 5.4511 -1.8547 5.7352 40 1 5.2557 0.5102 -0.1381 41 1 6.0310 2.1203 -1.8300 42 1 4.9514 2.2023 -4.0402 43 1 3.0998 0.6693 -4.5687 44 1 2.3226 -0.9511 -2.8877 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348171898.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:29 Heat of formation + Delta-G solvation = -26.714000 kcal Electronic energy + Delta-G solvation = -29129.479708 eV Core-core repulsion = 25204.146347 eV Total energy + Delta-G solvation = -3925.333361 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.69825 -41.21557 -39.38505 -39.07240 -36.79668 -35.45413 -34.29198 -34.08984 -31.88855 -31.80030 -31.45765 -30.10992 -27.09883 -26.03000 -24.75324 -23.56930 -23.34517 -22.33794 -21.41270 -20.83362 -19.64753 -18.90444 -18.11063 -17.78071 -17.64551 -17.06878 -16.73732 -16.52266 -16.07859 -16.06357 -15.85730 -15.68506 -15.31742 -15.20830 -14.76860 -14.49554 -14.37928 -14.33210 -14.05599 -13.89982 -13.63362 -13.52381 -12.98466 -12.74366 -12.63155 -12.51996 -12.44524 -12.18566 -12.08346 -11.88572 -11.85452 -11.23537 -10.83204 -10.63949 -10.58026 -10.32360 -9.90604 -9.85427 -9.66865 -9.36332 -8.61351 -6.16884 -0.08751 0.32938 0.42291 0.43828 1.21124 1.28446 1.38162 1.79825 1.93187 2.18064 2.51820 2.58807 2.76004 2.91880 3.03378 3.76077 3.84391 3.94983 3.98577 4.05503 4.13235 4.23417 4.26255 4.30516 4.40729 4.51462 4.52966 4.57209 4.64118 4.68276 4.78496 4.90010 5.00478 5.08058 5.13362 5.25659 5.32902 5.36694 5.48622 5.52617 5.53672 5.60455 5.65697 5.91043 5.92353 5.98896 5.99337 6.31932 6.47813 6.84040 7.28789 7.37056 7.67330 8.50395 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.015018 B = 0.003583 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.007229 B = 7812.551311 C = 7973.954168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.047 3.953 3 Si 0.905 3.095 4 H -0.238 1.238 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.347 4.347 8 H 0.095 0.905 9 N -0.438 5.438 10 C 0.480 3.520 11 O -0.603 6.603 12 C -0.084 4.084 13 C -0.059 4.059 14 C -0.040 4.040 15 C -0.138 4.138 16 C -0.085 4.085 17 C -0.129 4.129 18 C -0.078 4.078 19 C -0.160 4.160 20 C 0.544 3.456 21 N -0.832 5.832 22 O -0.571 6.571 23 C 0.128 3.872 24 C -0.153 4.153 25 C -0.116 4.116 26 C -0.129 4.129 27 C -0.108 4.108 28 C -0.137 4.137 29 H 0.281 0.719 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.133 0.867 35 H 0.158 0.842 36 H 0.166 0.834 37 H 0.160 0.840 38 H 0.416 0.584 39 H 0.409 0.591 40 H 0.093 0.907 41 H 0.151 0.849 42 H 0.166 0.834 43 H 0.158 0.842 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.309 -9.062 9.324 14.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.159 4.159 3 Si 0.731 3.269 4 H -0.161 1.161 5 H -0.219 1.219 6 H -0.207 1.207 7 C -0.472 4.472 8 H 0.113 0.887 9 N -0.154 5.154 10 C 0.273 3.727 11 O -0.488 6.488 12 C -0.124 4.124 13 C -0.096 4.096 14 C -0.042 4.042 15 C -0.156 4.156 16 C -0.103 4.103 17 C -0.147 4.147 18 C -0.096 4.096 19 C -0.163 4.163 20 C 0.331 3.669 21 N -0.397 5.397 22 O -0.451 6.451 23 C 0.037 3.963 24 C -0.173 4.173 25 C -0.134 4.134 26 C -0.147 4.147 27 C -0.126 4.126 28 C -0.156 4.156 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.151 0.849 35 H 0.175 0.825 36 H 0.184 0.816 37 H 0.178 0.822 38 H 0.249 0.751 39 H 0.241 0.759 40 H 0.111 0.889 41 H 0.168 0.832 42 H 0.183 0.817 43 H 0.175 0.825 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 6.752 -8.691 8.451 13.876 hybrid contribution -0.009 1.001 0.678 1.209 sum 6.743 -7.690 9.129 13.710 Atomic orbital electron populations 1.69799 1.06964 1.29149 1.46210 1.25555 0.95463 1.00325 0.94508 0.86446 0.78381 0.80786 0.81283 1.16115 1.21883 1.20680 1.19040 0.86101 0.96967 1.45134 0.88689 1.41689 1.10971 1.28490 1.34251 1.21153 0.83654 0.83600 0.84294 1.90505 1.21810 1.73861 1.62628 1.21098 0.98747 0.96464 0.96081 1.20345 0.98114 0.95539 0.95631 1.20042 0.95869 0.95007 0.93233 1.21293 1.00260 0.92878 1.01179 1.21749 0.95638 1.00379 0.92526 1.21541 0.99670 0.95897 0.97573 1.21621 0.95625 0.93689 0.98705 1.19848 1.07231 0.94566 0.94667 1.18752 0.76991 0.87607 0.83524 1.43550 1.69797 1.19788 1.06603 1.90896 1.52012 1.55765 1.46409 1.18055 0.95889 0.92316 0.90080 1.21211 0.98913 0.97181 1.00033 1.21313 1.00457 0.98076 0.93568 1.21509 0.96273 1.00024 0.96914 1.21403 0.97076 0.94592 0.99531 1.21308 1.01164 1.01051 0.92120 0.90957 0.90198 0.90186 0.91963 0.90701 0.84864 0.82467 0.81641 0.82207 0.75137 0.75948 0.88915 0.83166 0.81683 0.82474 0.86653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -51.17 13.96 21.65 0.30 -50.87 16 2 C 0.05 2.68 5.17 84.91 0.44 3.12 16 3 Si 0.91 46.15 23.56 68.60 1.62 47.77 16 4 H -0.24 -11.38 5.26 99.48 0.52 -10.86 16 5 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 6 H -0.28 -15.10 6.33 99.48 0.63 -14.47 16 7 C -0.35 -19.78 9.07 84.02 0.76 -19.02 16 8 H 0.10 5.59 6.93 -2.91 -0.02 5.57 16 9 N -0.44 -23.97 2.48 -458.90 -1.14 -25.11 16 10 C 0.48 25.75 7.44 87.66 0.65 26.40 16 11 O -0.60 -34.30 15.50 -3.02 -0.05 -34.35 16 12 C -0.08 -3.89 3.91 29.85 0.12 -3.77 16 13 C -0.06 -2.35 3.90 29.85 0.12 -2.24 16 14 C -0.04 -1.27 5.17 -19.61 -0.10 -1.37 16 15 C -0.14 -3.41 9.66 22.23 0.21 -3.19 16 16 C -0.08 -1.47 10.04 22.33 0.22 -1.24 16 17 C -0.13 -1.88 10.03 22.23 0.22 -1.65 16 18 C -0.08 -1.36 9.53 22.53 0.21 -1.15 16 19 C -0.16 -4.39 5.87 -20.09 -0.12 -4.50 16 20 C 0.54 16.78 7.91 86.79 0.69 17.47 16 21 N -0.83 -16.03 8.82 -175.61 -1.55 -17.58 16 22 O -0.57 -24.24 12.43 -3.86 -0.05 -24.28 16 23 C 0.13 6.54 2.32 38.22 0.09 6.63 16 24 C -0.15 -7.33 5.91 22.41 0.13 -7.20 16 25 C -0.12 -4.36 9.59 22.25 0.21 -4.15 16 26 C -0.13 -4.23 9.76 22.30 0.22 -4.01 16 27 C -0.11 -3.87 9.65 22.25 0.21 -3.66 16 28 C -0.14 -6.23 8.42 22.41 0.19 -6.04 16 29 H 0.28 15.18 8.31 -92.71 -0.77 14.41 16 30 H 0.08 3.95 6.58 -2.39 -0.02 3.93 16 31 H 0.08 3.53 7.47 -2.39 -0.02 3.51 16 32 H 0.06 2.44 7.98 -2.39 -0.02 2.42 16 33 H 0.07 3.41 5.91 -2.39 -0.01 3.39 16 34 H 0.13 3.06 8.05 -2.91 -0.02 3.03 16 35 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 36 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 37 H 0.16 1.46 6.45 -2.91 -0.02 1.45 16 38 H 0.42 4.40 6.90 -92.70 -0.64 3.76 16 39 H 0.41 7.31 8.93 -92.71 -0.83 6.49 16 40 H 0.09 4.79 7.82 -2.91 -0.02 4.77 16 41 H 0.15 4.51 8.06 -2.91 -0.02 4.49 16 42 H 0.17 3.77 8.06 -2.91 -0.02 3.75 16 43 H 0.16 4.32 8.06 -2.91 -0.02 4.30 16 44 H 0.12 5.38 8.06 -2.91 -0.02 5.36 16 Total: -1.00 -82.63 358.47 2.95 -79.68 By element: Atomic # 1 Polarization: 34.99 SS G_CDS: -0.67 Total: 34.32 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: 4.49 Total: -9.58 kcal Atomic # 7 Polarization: -91.17 SS G_CDS: -2.39 Total: -93.56 kcal Atomic # 8 Polarization: -58.54 SS G_CDS: -0.09 Total: -58.63 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 1.62 Total: 47.77 kcal Total: -82.63 2.95 -79.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348171898.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.969 kcal (2) G-P(sol) polarization free energy of solvation -82.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds