Wall clock time and date at job start Tue Mar 31 2020 21:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30842 * 125.89342 * 2 1 4 4 N 1.40079 * 108.19928 * 179.97438 * 3 2 1 5 5 C 1.46501 * 126.03229 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47078 * 90.02919 * 5 4 3 7 7 C 1.50707 * 109.47017 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99658 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00011 * 179.97438 * 7 6 5 10 10 C 1.47584 * 134.49657 * 179.97438 * 9 7 6 11 11 C 1.53946 * 86.12025 * 155.36378 * 10 9 7 12 12 O 1.42897 * 113.74068 * 269.15867 * 11 10 9 13 13 C 1.50700 * 113.74246 * 137.95222 * 11 10 9 14 14 H 1.07998 * 119.99659 * 4.91778 * 13 11 10 15 15 C 1.37870 * 120.00275 * 184.91298 * 13 11 10 16 16 N 1.31521 * 119.99939 * 13.83955 * 15 13 11 17 17 Si 1.86793 * 120.00241 * 193.83635 * 15 13 11 18 18 H 1.48503 * 109.47305 * 180.02562 * 17 15 13 19 19 H 1.48502 * 109.47166 * 299.99995 * 17 15 13 20 20 H 1.48499 * 109.46987 * 59.99962 * 17 15 13 21 21 C 1.47585 * 134.49296 * 0.02562 * 9 7 6 22 22 C 1.34945 * 107.92862 * 0.26548 * 4 3 2 23 23 C 1.50706 * 126.12665 * 179.73418 * 22 4 3 24 24 C 1.35309 * 107.74575 * 359.57584 * 22 4 3 25 25 N 1.48020 * 126.04228 * 180.16351 * 24 22 4 26 26 O 1.21802 * 120.00207 * 270.28466 * 25 24 22 27 27 O 1.21804 * 120.00356 * 90.27784 * 25 24 22 28 28 H 1.08994 * 109.47624 * 90.02187 * 1 2 3 29 29 H 1.09000 * 109.47174 * 210.02215 * 1 2 3 30 30 H 1.09004 * 109.47238 * 330.02065 * 1 2 3 31 31 H 1.09002 * 109.47446 * 330.02326 * 5 4 3 32 32 H 1.09004 * 109.47091 * 210.02395 * 5 4 3 33 33 H 1.08992 * 109.47552 * 59.99997 * 6 5 4 34 34 H 1.08994 * 109.47209 * 299.99463 * 6 5 4 35 35 H 1.09003 * 113.76727 * 41.05948 * 10 9 7 36 36 H 1.09000 * 113.86995 * 269.68290 * 10 9 7 37 37 H 0.96698 * 114.00098 * 171.44601 * 12 11 10 38 38 H 0.97007 * 119.99483 * 5.87247 * 16 15 13 39 39 H 1.08994 * 113.77423 * 90.33340 * 21 9 7 40 40 H 1.09010 * 113.76672 * 318.93187 * 21 9 7 41 41 H 1.08997 * 109.47134 * 90.00187 * 23 22 4 42 42 H 1.09003 * 109.46928 * 209.99863 * 23 22 4 43 43 H 1.09001 * 109.47071 * 329.99886 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0600 0.0000 4 7 3.6086 0.6342 0.0006 5 6 4.7897 1.5010 0.0013 6 6 5.2006 1.8019 1.4441 7 6 6.4160 2.6930 1.4448 8 8 6.9050 3.0524 0.3948 9 7 6.9588 3.0914 2.6123 10 6 8.1112 3.9358 2.9824 11 6 7.3686 4.1863 4.3075 12 8 6.5134 5.3308 4.2803 13 6 8.2624 4.1494 5.5203 14 1 9.3301 4.0393 5.4010 15 6 7.7172 4.2564 6.7820 16 7 6.4204 4.1173 6.9520 17 14 8.8201 4.5988 8.2502 18 1 7.9957 4.6662 9.4836 19 1 9.8202 3.5091 8.3828 20 1 9.5212 5.8927 8.0515 21 6 6.6401 2.8575 4.0342 22 6 3.6142 -0.7152 -0.0050 23 6 4.8351 -1.5987 -0.0122 24 6 2.3272 -1.1329 0.0005 25 7 1.8683 -2.5402 0.0007 26 8 1.6794 -3.1194 -1.0540 27 8 1.6796 -3.1192 1.0556 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3634 0.8902 0.5135 31 1 4.5563 2.4337 -0.5121 32 1 5.6094 0.9987 -0.5126 33 1 5.4341 0.8692 1.9574 34 1 4.3811 2.3042 1.9580 35 1 8.2193 4.8270 2.3641 36 1 9.0435 3.3833 3.0989 37 1 5.9482 5.4181 5.0600 38 1 5.8588 3.8557 6.2056 39 1 7.1398 1.9871 4.4591 40 1 5.5732 2.8876 4.2560 41 1 5.1323 -1.8160 1.0137 42 1 4.6061 -2.5306 -0.5292 43 1 5.6497 -1.0886 -0.5262 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352218389.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:52 Heat of formation + Delta-G solvation = 19.349200 kcal Electronic energy + Delta-G solvation = -29111.046179 eV Core-core repulsion = 24776.861005 eV Total energy + Delta-G solvation = -4334.185174 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.76501 -41.64413 -39.98948 -38.03395 -36.64904 -35.41891 -34.48195 -33.34649 -32.52193 -31.78863 -29.49488 -28.99486 -27.80294 -26.07812 -25.72366 -25.04003 -23.52987 -21.41848 -20.66367 -20.37789 -18.98420 -18.93436 -18.73899 -18.15982 -17.43217 -16.93438 -16.36565 -16.09275 -15.78675 -15.46381 -14.88207 -14.56969 -14.41606 -14.05479 -14.00642 -13.91759 -13.54215 -13.43434 -13.19567 -12.88272 -12.73512 -12.67552 -12.37083 -12.28538 -11.90089 -11.83438 -11.75319 -11.55956 -11.31308 -11.28541 -11.18088 -11.03013 -10.70423 -10.30537 -10.01907 -9.83975 -9.61737 -9.49798 -8.96399 -8.62337 -8.13048 -6.80905 -4.61453 0.33355 0.85037 0.98538 1.62247 1.85771 2.73124 3.12000 3.22733 3.28071 3.45136 3.61449 3.74900 4.05646 4.22402 4.33147 4.39453 4.47996 4.51874 4.70943 4.76237 4.85867 4.94486 5.04147 5.06951 5.11603 5.15363 5.20242 5.39895 5.44107 5.50740 5.59844 5.81730 5.95401 6.02715 6.12174 6.17787 6.19714 6.23830 6.60042 6.80886 7.43178 7.50457 7.96165 8.04577 8.25933 8.33204 8.68135 9.09080 10.50440 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016550 B = 0.002391 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.434343 B =11707.406369 C =12228.201855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.127 3.873 3 N -0.262 5.262 4 N -0.343 5.343 5 C 0.146 3.854 6 C -0.154 4.154 7 C 0.536 3.464 8 O -0.563 6.563 9 N -0.628 5.628 10 C 0.124 3.876 11 C 0.217 3.783 12 O -0.566 6.566 13 C -0.619 4.619 14 H 0.066 0.934 15 C 0.038 3.962 16 N -0.895 5.895 17 Si 1.067 2.933 18 H -0.280 1.280 19 H -0.284 1.284 20 H -0.283 1.283 21 C 0.067 3.933 22 C 0.164 3.836 23 C -0.114 4.114 24 C -0.192 4.192 25 N 0.053 4.947 26 O -0.142 6.142 27 O -0.138 6.138 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.376 0.624 38 H 0.267 0.733 39 H 0.090 0.910 40 H 0.066 0.934 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.587 -10.110 -11.067 16.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.042 4.042 3 N -0.083 5.083 4 N -0.122 5.122 5 C 0.026 3.974 6 C -0.194 4.194 7 C 0.324 3.676 8 O -0.444 6.444 9 N -0.361 5.361 10 C 0.002 3.998 11 C 0.176 3.824 12 O -0.373 6.373 13 C -0.657 4.657 14 H 0.084 0.916 15 C -0.168 4.168 16 N -0.531 5.531 17 Si 0.893 3.107 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.209 1.209 21 C -0.056 4.056 22 C 0.031 3.969 23 C -0.172 4.172 24 C -0.286 4.286 25 N 0.584 4.416 26 O -0.365 6.365 27 O -0.362 6.362 28 H 0.109 0.891 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.135 0.865 32 H 0.130 0.870 33 H 0.115 0.885 34 H 0.122 0.878 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.225 0.775 38 H 0.079 0.921 39 H 0.108 0.892 40 H 0.084 0.916 41 H 0.120 0.880 42 H 0.110 0.890 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.738 -7.436 -10.758 14.281 hybrid contribution -0.406 -1.699 -1.030 2.028 sum -6.144 -9.135 -11.788 16.129 Atomic orbital electron populations 1.20418 0.84925 1.04738 1.04330 1.22174 0.97768 0.87031 0.97177 1.77704 0.85711 1.20368 1.24489 1.48680 1.06428 1.03176 1.53893 1.21758 0.82267 0.95465 0.97888 1.21915 0.98730 1.01650 0.97149 1.19645 0.84549 0.80555 0.82862 1.90681 1.64601 1.58515 1.30577 1.50178 1.31093 1.49275 1.05573 1.23350 0.89372 0.92786 0.94244 1.20127 0.87621 0.81699 0.92933 1.86252 1.57212 1.46871 1.46983 1.22208 0.95152 1.57060 0.91278 0.91561 1.26007 0.97871 0.91987 1.00968 1.70970 1.04951 1.42055 1.35161 0.83577 0.74827 0.77020 0.75277 1.20481 1.21055 1.20925 1.24584 1.00912 1.03266 0.76846 1.20604 0.95012 0.85936 0.95397 1.20830 0.92738 0.98197 1.05394 1.20342 0.93839 0.82599 1.31818 1.42541 0.97694 1.01313 1.00083 1.94549 1.53755 1.67148 1.21017 1.94570 1.53589 1.67068 1.20925 0.89054 0.90141 0.88920 0.86450 0.87013 0.88480 0.87773 0.90770 0.89050 0.77475 0.92094 0.89196 0.91556 0.87980 0.88988 0.88717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.72 10.44 36.01 0.38 -0.35 16 2 C 0.13 1.48 7.22 -82.40 -0.59 0.89 16 3 N -0.26 -3.34 12.58 33.67 0.42 -2.92 16 4 N -0.34 -3.94 3.61 -57.14 -0.21 -4.14 16 5 C 0.15 1.60 5.54 -4.04 -0.02 1.57 16 6 C -0.15 -1.93 5.77 -27.88 -0.16 -2.09 16 7 C 0.54 9.02 8.06 -10.98 -0.09 8.93 16 8 O -0.56 -10.78 16.71 5.56 0.09 -10.69 16 9 N -0.63 -11.63 3.61 -178.25 -0.64 -12.27 16 10 C 0.12 2.47 8.22 -2.97 -0.02 2.45 16 11 C 0.22 4.79 1.08 -90.83 -0.10 4.69 16 12 O -0.57 -13.22 13.45 -35.23 -0.47 -13.69 16 13 C -0.62 -14.89 8.56 -34.44 -0.29 -15.19 16 14 H 0.07 1.58 7.85 -52.49 -0.41 1.17 16 15 C 0.04 0.92 5.26 -17.82 -0.09 0.83 16 16 N -0.90 -22.64 12.80 55.43 0.71 -21.93 16 17 Si 1.07 21.90 29.93 -169.99 -5.09 16.81 16 18 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 19 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 20 H -0.28 -5.70 7.11 56.52 0.40 -5.29 16 21 C 0.07 1.28 7.05 -2.95 -0.02 1.26 16 22 C 0.16 1.76 6.93 -82.26 -0.57 1.19 16 23 C -0.11 -0.86 10.08 36.01 0.36 -0.49 16 24 C -0.19 -2.31 6.60 -80.38 -0.53 -2.84 16 25 N 0.05 0.67 4.41 33.75 0.15 0.81 16 26 O -0.14 -1.84 19.26 -29.46 -0.57 -2.41 16 27 O -0.14 -1.84 19.26 -29.46 -0.57 -2.41 16 28 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.12 1.36 8.10 -51.93 -0.42 0.94 16 32 H 0.11 1.03 7.00 -51.93 -0.36 0.67 16 33 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.09 1.68 8.09 -51.93 -0.42 1.26 16 37 H 0.38 8.63 6.95 45.56 0.32 8.94 16 38 H 0.27 6.53 5.53 -40.82 -0.23 6.30 16 39 H 0.09 1.69 8.09 -51.93 -0.42 1.26 16 40 H 0.07 1.23 7.80 -51.92 -0.41 0.83 16 41 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.09 0.56 7.08 -51.93 -0.37 0.19 16 LS Contribution 379.37 15.07 5.72 5.72 Total: -1.00 -29.63 379.37 -7.11 -36.74 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -4.90 Total: 9.53 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -1.76 Total: 0.85 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: 0.43 Total: -40.45 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -1.52 Total: -29.20 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.09 Total: 16.81 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.63 -7.11 -36.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352218389.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.090 kcal (2) G-P(sol) polarization free energy of solvation -29.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds