Wall clock time and date at job start Tue Mar 31 2020 21:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30842 * 125.89342 * 2 1 4 4 N 1.40079 * 108.19928 * 179.97438 * 3 2 1 5 5 C 1.46501 * 126.03229 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47078 * 90.02919 * 5 4 3 7 7 C 1.50707 * 109.47017 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99658 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00011 * 179.97438 * 7 6 5 10 10 C 1.47584 * 134.49657 * 179.97438 * 9 7 6 11 11 C 1.53946 * 86.12025 * 155.36378 * 10 9 7 12 12 O 1.42897 * 113.74068 * 269.15867 * 11 10 9 13 13 C 1.50700 * 113.74246 * 137.95222 * 11 10 9 14 14 H 1.07998 * 119.99659 * 4.91778 * 13 11 10 15 15 C 1.37870 * 120.00275 * 184.91298 * 13 11 10 16 16 N 1.31521 * 119.99939 * 13.83955 * 15 13 11 17 17 Si 1.86793 * 120.00241 * 193.83635 * 15 13 11 18 18 H 1.48503 * 109.47305 * 180.02562 * 17 15 13 19 19 H 1.48502 * 109.47166 * 299.99995 * 17 15 13 20 20 H 1.48499 * 109.46987 * 59.99962 * 17 15 13 21 21 C 1.47585 * 134.49296 * 0.02562 * 9 7 6 22 22 C 1.34945 * 107.92862 * 0.26548 * 4 3 2 23 23 C 1.50706 * 126.12665 * 179.73418 * 22 4 3 24 24 C 1.35309 * 107.74575 * 359.57584 * 22 4 3 25 25 N 1.48020 * 126.04228 * 180.16351 * 24 22 4 26 26 O 1.21802 * 120.00207 * 270.28466 * 25 24 22 27 27 O 1.21804 * 120.00356 * 90.27784 * 25 24 22 28 28 H 1.08994 * 109.47624 * 90.02187 * 1 2 3 29 29 H 1.09000 * 109.47174 * 210.02215 * 1 2 3 30 30 H 1.09004 * 109.47238 * 330.02065 * 1 2 3 31 31 H 1.09002 * 109.47446 * 330.02326 * 5 4 3 32 32 H 1.09004 * 109.47091 * 210.02395 * 5 4 3 33 33 H 1.08992 * 109.47552 * 59.99997 * 6 5 4 34 34 H 1.08994 * 109.47209 * 299.99463 * 6 5 4 35 35 H 1.09003 * 113.76727 * 41.05948 * 10 9 7 36 36 H 1.09000 * 113.86995 * 269.68290 * 10 9 7 37 37 H 0.96698 * 114.00098 * 171.44601 * 12 11 10 38 38 H 0.97007 * 119.99483 * 5.87247 * 16 15 13 39 39 H 1.08994 * 113.77423 * 90.33340 * 21 9 7 40 40 H 1.09010 * 113.76672 * 318.93187 * 21 9 7 41 41 H 1.08997 * 109.47134 * 90.00187 * 23 22 4 42 42 H 1.09003 * 109.46928 * 209.99863 * 23 22 4 43 43 H 1.09001 * 109.47071 * 329.99886 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0600 0.0000 4 7 3.6086 0.6342 0.0006 5 6 4.7897 1.5010 0.0013 6 6 5.2006 1.8019 1.4441 7 6 6.4160 2.6930 1.4448 8 8 6.9050 3.0524 0.3948 9 7 6.9588 3.0914 2.6123 10 6 8.1112 3.9358 2.9824 11 6 7.3686 4.1863 4.3075 12 8 6.5134 5.3308 4.2803 13 6 8.2624 4.1494 5.5203 14 1 9.3301 4.0393 5.4010 15 6 7.7172 4.2564 6.7820 16 7 6.4204 4.1173 6.9520 17 14 8.8201 4.5988 8.2502 18 1 7.9957 4.6662 9.4836 19 1 9.8202 3.5091 8.3828 20 1 9.5212 5.8927 8.0515 21 6 6.6401 2.8575 4.0342 22 6 3.6142 -0.7152 -0.0050 23 6 4.8351 -1.5987 -0.0122 24 6 2.3272 -1.1329 0.0005 25 7 1.8683 -2.5402 0.0007 26 8 1.6794 -3.1194 -1.0540 27 8 1.6796 -3.1192 1.0556 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3634 0.8902 0.5135 31 1 4.5563 2.4337 -0.5121 32 1 5.6094 0.9987 -0.5126 33 1 5.4341 0.8692 1.9574 34 1 4.3811 2.3042 1.9580 35 1 8.2193 4.8270 2.3641 36 1 9.0435 3.3833 3.0989 37 1 5.9482 5.4181 5.0600 38 1 5.8588 3.8557 6.2056 39 1 7.1398 1.9871 4.4591 40 1 5.5732 2.8876 4.2560 41 1 5.1323 -1.8160 1.0137 42 1 4.6061 -2.5306 -0.5292 43 1 5.6497 -1.0886 -0.5262 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352218389.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:51 Heat of formation + Delta-G solvation = 0.413296 kcal Electronic energy + Delta-G solvation = -29111.867302 eV Core-core repulsion = 24776.861005 eV Total energy + Delta-G solvation = -4335.006296 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.66140 -42.57033 -41.48252 -39.53076 -37.63579 -36.37570 -36.15199 -34.36895 -34.15747 -32.74044 -30.69058 -29.91567 -28.83649 -27.31778 -27.14805 -26.49222 -24.59452 -22.33696 -22.13044 -21.31336 -20.30472 -19.95113 -19.85791 -19.73997 -18.53545 -18.05860 -17.55753 -17.20325 -17.01908 -16.73520 -16.46558 -15.80951 -15.68844 -15.41897 -15.10983 -14.67100 -14.54626 -14.44523 -14.20080 -14.05626 -13.85608 -13.75449 -13.47829 -13.46191 -13.22365 -13.01469 -12.83837 -12.78260 -12.65601 -12.50995 -12.41303 -12.32753 -12.09761 -11.93044 -11.36033 -11.20212 -10.78005 -10.73044 -10.53922 -10.28194 -9.72955 -8.69747 -6.50965 -0.67024 0.00255 0.08278 0.75819 0.97044 1.38374 1.59915 1.63347 1.75622 1.84707 2.53942 2.84810 2.89195 2.92547 3.18911 3.32764 3.36095 3.51176 3.61575 3.67465 3.85783 4.00832 4.19476 4.23141 4.26064 4.27649 4.35962 4.39261 4.43249 4.44108 4.56488 4.60230 4.62925 4.68784 4.72477 4.87188 4.93870 5.16508 5.28861 5.71190 5.95108 6.06940 6.42137 6.43351 6.61381 6.86518 6.89567 7.24755 8.63276 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016550 B = 0.002391 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.434343 B =11707.406369 C =12228.201855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.125 3.875 3 N -0.290 5.290 4 N -0.346 5.346 5 C 0.152 3.848 6 C -0.140 4.140 7 C 0.536 3.464 8 O -0.585 6.585 9 N -0.631 5.631 10 C 0.124 3.876 11 C 0.195 3.805 12 O -0.577 6.577 13 C -0.631 4.631 14 H 0.063 0.937 15 C 0.000 4.000 16 N -0.916 5.916 17 Si 1.107 2.893 18 H -0.286 1.286 19 H -0.269 1.269 20 H -0.278 1.278 21 C 0.085 3.915 22 C 0.173 3.827 23 C -0.116 4.116 24 C -0.215 4.215 25 N 0.059 4.941 26 O -0.144 6.144 27 O -0.155 6.155 28 H 0.106 0.894 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.133 0.867 33 H 0.119 0.881 34 H 0.099 0.901 35 H 0.064 0.936 36 H 0.106 0.894 37 H 0.374 0.626 38 H 0.265 0.735 39 H 0.096 0.904 40 H 0.070 0.930 41 H 0.115 0.885 42 H 0.095 0.905 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.202 -11.167 -11.399 17.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.044 4.044 3 N -0.111 5.111 4 N -0.125 5.125 5 C 0.032 3.968 6 C -0.181 4.181 7 C 0.326 3.674 8 O -0.467 6.467 9 N -0.364 5.364 10 C 0.002 3.998 11 C 0.154 3.846 12 O -0.385 6.385 13 C -0.669 4.669 14 H 0.081 0.919 15 C -0.202 4.202 16 N -0.553 5.553 17 Si 0.930 3.070 18 H -0.212 1.212 19 H -0.194 1.194 20 H -0.204 1.204 21 C -0.038 4.038 22 C 0.039 3.961 23 C -0.174 4.174 24 C -0.309 4.309 25 N 0.589 4.411 26 O -0.368 6.368 27 O -0.375 6.375 28 H 0.124 0.876 29 H 0.101 0.899 30 H 0.120 0.880 31 H 0.127 0.873 32 H 0.151 0.849 33 H 0.137 0.863 34 H 0.118 0.882 35 H 0.082 0.918 36 H 0.123 0.877 37 H 0.223 0.777 38 H 0.076 0.924 39 H 0.114 0.886 40 H 0.089 0.911 41 H 0.133 0.867 42 H 0.114 0.886 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.359 -8.509 -11.095 14.974 hybrid contribution -0.522 -1.345 -1.006 1.759 sum -5.882 -9.855 -12.101 16.677 Atomic orbital electron populations 1.20557 0.83163 1.05301 1.05462 1.22661 0.99023 0.86661 0.96049 1.77677 0.86442 1.21133 1.25871 1.48650 1.06129 1.03469 1.54211 1.21721 0.82717 0.95583 0.96762 1.21825 0.96204 1.01418 0.98615 1.20281 0.85083 0.80284 0.81757 1.90672 1.65483 1.59373 1.31144 1.50135 1.30854 1.49510 1.05912 1.23294 0.90358 0.93084 0.93063 1.20381 0.88267 0.82545 0.93391 1.86237 1.57381 1.47974 1.46884 1.22456 0.95370 1.56856 0.92238 0.91889 1.27032 0.98329 0.91595 1.03253 1.71031 1.05551 1.43461 1.35285 0.83028 0.73811 0.77532 0.72633 1.21162 1.19377 1.20411 1.24271 1.00801 1.01624 0.77115 1.21092 0.95669 0.85830 0.93523 1.21031 0.91911 0.97899 1.06529 1.20524 0.94696 0.82095 1.33545 1.42596 0.97236 1.01517 0.99782 1.94539 1.53672 1.67506 1.21087 1.94568 1.54323 1.67537 1.21097 0.87563 0.89914 0.87966 0.87276 0.84889 0.86291 0.88246 0.91781 0.87660 0.77704 0.92395 0.88591 0.91135 0.86691 0.88636 0.86691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.36 10.44 71.24 0.74 -0.61 16 2 C 0.12 2.77 7.22 43.10 0.31 3.08 16 3 N -0.29 -7.09 12.58 -47.38 -0.60 -7.69 16 4 N -0.35 -7.31 3.61 -334.69 -1.21 -8.52 16 5 C 0.15 3.00 5.54 86.38 0.48 3.48 16 6 C -0.14 -3.21 5.77 29.85 0.17 -3.04 16 7 C 0.54 17.16 8.06 87.66 0.71 17.86 16 8 O -0.58 -21.55 16.71 -3.03 -0.05 -21.60 16 9 N -0.63 -22.56 3.61 -840.07 -3.03 -25.59 16 10 C 0.12 4.86 8.22 86.48 0.71 5.57 16 11 C 0.19 8.51 1.08 -10.87 -0.01 8.50 16 12 O -0.58 -27.12 13.45 -148.98 -2.00 -29.13 16 13 C -0.63 -30.07 8.56 25.60 0.22 -29.85 16 14 H 0.06 2.97 7.85 -2.91 -0.02 2.94 16 15 C 0.00 -0.01 5.26 84.65 0.45 0.44 16 16 N -0.92 -46.11 12.80 21.45 0.27 -45.83 16 17 Si 1.11 43.46 29.93 68.60 2.05 45.51 16 18 H -0.29 -11.45 7.11 99.48 0.71 -10.74 16 19 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 20 H -0.28 -10.61 7.11 99.48 0.71 -9.90 16 21 C 0.08 3.15 7.05 86.49 0.61 3.76 16 22 C 0.17 3.36 6.93 41.41 0.29 3.65 16 23 C -0.12 -1.42 10.08 71.24 0.72 -0.70 16 24 C -0.21 -4.88 6.60 36.09 0.24 -4.64 16 25 N 0.06 1.42 4.41 -47.13 -0.21 1.21 16 26 O -0.14 -3.57 19.26 18.88 0.36 -3.21 16 27 O -0.15 -4.00 19.26 18.88 0.36 -3.64 16 28 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.11 2.38 8.10 -2.39 -0.02 2.36 16 32 H 0.13 2.06 7.00 -2.39 -0.02 2.05 16 33 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 36 H 0.11 3.77 8.09 -2.39 -0.02 3.75 16 37 H 0.37 17.41 6.95 -74.06 -0.52 16.90 16 38 H 0.26 12.93 5.53 -92.70 -0.51 12.42 16 39 H 0.10 3.45 8.09 -2.39 -0.02 3.43 16 40 H 0.07 2.55 7.80 -2.38 -0.02 2.53 16 41 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.11 0.95 7.08 -2.39 -0.02 0.93 16 Total: -1.00 -62.37 379.37 2.39 -59.98 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: 0.81 Total: 31.00 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 5.63 Total: 7.50 kcal Atomic # 7 Polarization: -81.64 SS G_CDS: -4.77 Total: -86.41 kcal Atomic # 8 Polarization: -56.25 SS G_CDS: -1.33 Total: -57.58 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.05 Total: 45.51 kcal Total: -62.37 2.39 -59.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352218389.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.395 kcal (2) G-P(sol) polarization free energy of solvation -62.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds