Wall clock time and date at job start Tue Mar 31 2020 20:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00068 * 2 1 4 4 H 1.48500 * 109.47314 * 269.99694 * 3 2 1 5 5 H 1.48500 * 109.47286 * 29.99762 * 3 2 1 6 6 H 1.48501 * 109.47419 * 149.99581 * 3 2 1 7 7 C 1.37877 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00091 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00135 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47546 * 180.02562 * 9 7 2 11 11 C 1.34775 * 120.00013 * 180.02562 * 10 9 7 12 12 O 1.21590 * 120.00400 * 359.97438 * 11 10 9 13 13 N 1.34784 * 119.99759 * 180.27519 * 11 10 9 14 14 C 1.40275 * 119.99703 * 173.81031 * 13 11 10 15 15 C 1.38680 * 120.06695 * 335.32477 * 14 13 11 16 16 C 1.38212 * 120.01420 * 179.72735 * 15 14 13 17 17 C 1.38476 * 120.13020 * 0.54503 * 16 15 14 18 18 F 1.35101 * 119.93680 * 179.74852 * 17 16 15 19 19 C 1.38431 * 120.12612 * 359.73159 * 17 16 15 20 20 C 1.38547 * 119.98813 * 359.97438 * 19 17 16 21 21 O 1.35980 * 120.06376 * 180.02562 * 20 19 17 22 22 C 1.42907 * 117.00136 * 5.67062 * 21 20 19 23 23 C 1.53181 * 109.54242 * 265.52441 * 22 21 20 24 24 C 1.53102 * 109.15415 * 183.24111 * 23 22 21 25 25 O 1.42907 * 109.48559 * 57.47518 * 24 23 22 26 26 C 1.42896 * 114.09956 * 298.88697 * 25 24 23 27 27 C 1.53091 * 109.41608 * 61.16059 * 26 25 24 28 28 H 0.97003 * 120.00361 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47008 * 59.99282 * 9 7 2 30 30 H 1.09006 * 109.47185 * 300.00534 * 9 7 2 31 31 H 0.97004 * 119.99853 * 359.97438 * 10 9 7 32 32 H 0.96996 * 119.99628 * 353.81003 * 13 11 10 33 33 H 1.08001 * 119.99625 * 359.97438 * 15 14 13 34 34 H 1.07991 * 119.93759 * 180.27567 * 16 15 14 35 35 H 1.07996 * 120.00865 * 180.02562 * 19 17 16 36 36 H 1.08995 * 109.54200 * 25.70254 * 22 21 20 37 37 H 1.08997 * 109.51998 * 303.05506 * 23 22 21 38 38 H 1.08995 * 109.52222 * 63.24733 * 23 22 21 39 39 H 1.08999 * 109.40886 * 297.49399 * 24 23 22 40 40 H 1.09002 * 109.48174 * 177.50046 * 24 23 22 41 41 H 1.09003 * 109.47981 * 301.17285 * 26 25 24 42 42 H 1.09004 * 109.49084 * 181.15218 * 26 25 24 43 43 H 1.09004 * 109.52341 * 182.48820 * 27 26 25 44 44 H 1.08997 * 109.57281 * 62.32910 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 1.7537 -4.8833 0.0015 12 8 0.5583 -5.1056 0.0006 13 7 2.6295 -5.9078 0.0082 14 6 2.1665 -7.2255 0.1389 15 6 0.9493 -7.4764 0.7543 16 6 0.4916 -8.7747 0.8774 17 6 1.2514 -9.8281 0.3974 18 9 0.8025 -11.0960 0.5244 19 6 2.4699 -9.5845 -0.2128 20 6 2.9308 -8.2846 -0.3444 21 8 4.1273 -8.0435 -0.9439 22 6 4.7987 -9.1629 -1.5257 23 6 5.7981 -9.7409 -0.5189 24 6 6.5693 -10.8873 -1.1784 25 8 7.2231 -10.4073 -2.3550 26 6 6.3332 -9.8997 -3.3510 27 6 5.5541 -8.7121 -2.7798 28 1 -0.4851 0.8400 -0.0004 29 1 0.6246 -2.5570 -0.8896 30 1 0.6239 -2.5567 0.8903 31 1 3.1567 -3.4354 0.0021 32 1 3.5799 -5.7338 -0.0773 33 1 0.3571 -6.6569 1.1338 34 1 -0.4585 -8.9683 1.3529 35 1 3.0607 -10.4075 -0.5869 36 1 4.0688 -9.9265 -1.7944 37 1 6.4968 -8.9628 -0.2117 38 1 5.2617 -10.1150 0.3530 39 1 5.8750 -11.6833 -1.4474 40 1 7.3129 -11.2736 -0.4812 41 1 5.6358 -10.6828 -3.6486 42 1 6.9065 -9.5745 -4.2193 43 1 4.8432 -8.3513 -3.5231 44 1 6.2469 -7.9119 -2.5198 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352369843.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:03 Heat of formation + Delta-G solvation = -131.074933 kcal Electronic energy + Delta-G solvation = -28961.254718 eV Core-core repulsion = 24600.626703 eV Total energy + Delta-G solvation = -4360.628015 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.92387 -41.00040 -39.91867 -38.83734 -37.23927 -34.58212 -34.16278 -33.11287 -32.38876 -31.66127 -30.37118 -29.02065 -26.94043 -25.48435 -24.13297 -23.45408 -22.72534 -22.07968 -20.77901 -20.27955 -18.87094 -18.32243 -17.64613 -17.03248 -16.58443 -16.32868 -16.06695 -15.83989 -15.68907 -15.38062 -15.18363 -15.00349 -14.91465 -14.58225 -14.22648 -14.16481 -13.65956 -13.59206 -13.20185 -12.95726 -12.83878 -12.67558 -12.26838 -12.03375 -11.85077 -11.79758 -11.67791 -11.33971 -11.00452 -10.95255 -10.91621 -10.74522 -10.33910 -10.21180 -10.14960 -9.48995 -9.43451 -8.79641 -8.75253 -8.07364 -7.57175 -6.20183 -4.27219 1.09582 1.18170 2.71207 3.06162 3.22443 3.29141 3.31586 3.38434 3.40399 3.87609 4.13682 4.20984 4.23932 4.28823 4.42540 4.44424 4.63910 4.69779 4.73994 4.85690 4.92810 4.93259 5.11504 5.12015 5.16333 5.19727 5.29978 5.46145 5.49488 5.62435 5.68536 5.71578 5.90224 6.06395 6.29888 6.52794 6.68243 6.77813 6.96759 7.21284 7.34934 7.45804 7.47796 7.77689 7.94800 8.63503 8.78484 9.11868 9.39733 10.89957 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011849 B = 0.002630 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.528061 B =10644.227662 C =12675.547891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.266 3.734 10 N -0.719 5.719 11 C 0.691 3.309 12 O -0.583 6.583 13 N -0.683 5.683 14 C 0.154 3.846 15 C -0.072 4.072 16 C -0.161 4.161 17 C 0.103 3.897 18 F -0.143 7.143 19 C -0.227 4.227 20 C 0.115 3.885 21 O -0.302 6.302 22 C 0.083 3.917 23 C -0.179 4.179 24 C 0.064 3.936 25 O -0.381 6.381 26 C 0.065 3.935 27 C -0.156 4.156 28 H 0.266 0.734 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.389 0.611 32 H 0.408 0.592 33 H 0.169 0.831 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.053 0.947 40 H 0.101 0.899 41 H 0.054 0.946 42 H 0.103 0.897 43 H 0.085 0.915 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.902 -23.061 -2.423 26.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.145 3.855 10 N -0.370 5.370 11 C 0.392 3.608 12 O -0.462 6.462 13 N -0.330 5.330 14 C 0.056 3.944 15 C -0.093 4.093 16 C -0.181 4.181 17 C 0.082 3.918 18 F -0.121 7.121 19 C -0.247 4.247 20 C 0.067 3.933 21 O -0.216 6.216 22 C 0.027 3.973 23 C -0.216 4.216 24 C -0.013 4.013 25 O -0.299 6.299 26 C -0.012 4.012 27 C -0.193 4.193 28 H 0.076 0.924 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.222 0.778 32 H 0.243 0.757 33 H 0.186 0.814 34 H 0.157 0.843 35 H 0.158 0.842 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.071 0.929 40 H 0.119 0.881 41 H 0.072 0.928 42 H 0.121 0.879 43 H 0.104 0.896 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.923 -22.822 -2.459 25.421 hybrid contribution 0.871 0.678 -0.034 1.104 sum 11.794 -22.145 -2.494 25.213 Atomic orbital electron populations 1.69968 1.06098 1.27395 1.48726 1.24936 0.94922 0.99435 0.94653 0.86398 0.79611 0.82563 0.78239 1.20450 1.20977 1.19734 1.21200 0.93314 0.90314 1.53435 0.91860 1.19072 0.87693 0.80849 0.97898 1.45797 1.11248 1.04085 1.75907 1.16139 0.85017 0.81051 0.78643 1.90834 1.13943 1.83594 1.57799 1.42679 1.10415 1.03193 1.76762 1.16954 0.94859 0.82207 1.00342 1.21358 0.94669 0.97349 0.95888 1.21015 1.01400 0.91323 1.04328 1.17290 0.93781 0.78974 1.01727 1.91473 1.89131 1.37308 1.94210 1.20802 0.98575 0.96287 1.09009 1.18265 0.86834 0.91760 0.96432 1.86108 1.30266 1.35597 1.69611 1.22496 0.93435 0.88168 0.93196 1.22750 0.99423 1.00145 0.99327 1.22570 0.97022 0.94496 0.87184 1.87966 1.33683 1.80954 1.27315 1.22593 0.93110 0.94244 0.91244 1.22356 1.00324 1.00229 0.96424 0.92378 0.95444 0.95383 0.77792 0.75653 0.81404 0.84344 0.84247 0.90317 0.89539 0.90004 0.92915 0.88131 0.92811 0.87860 0.89628 0.89512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.64 13.29 55.43 0.74 -24.91 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.54 -14.45 9.28 -34.44 -0.32 -14.77 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.27 6.86 5.43 -5.20 -0.03 6.83 16 10 N -0.72 -14.77 5.55 -66.41 -0.37 -15.14 16 11 C 0.69 13.69 8.37 -86.91 -0.73 12.96 16 12 O -0.58 -13.49 13.52 5.29 0.07 -13.42 16 13 N -0.68 -10.58 5.30 -14.09 -0.07 -10.65 16 14 C 0.15 2.29 6.45 -83.45 -0.54 1.75 16 15 C -0.07 -1.09 8.72 -39.43 -0.34 -1.43 16 16 C -0.16 -2.09 10.02 -39.50 -0.40 -2.49 16 17 C 0.10 1.27 7.30 -39.42 -0.29 0.98 16 18 F -0.14 -1.74 17.26 2.25 0.04 -1.71 16 19 C -0.23 -2.57 8.93 -39.40 -0.35 -2.92 16 20 C 0.12 1.45 6.69 -39.09 -0.26 1.18 16 21 O -0.30 -3.38 9.20 -19.68 -0.18 -3.57 16 22 C 0.08 0.70 2.18 -26.54 -0.06 0.64 16 23 C -0.18 -1.30 5.75 -26.58 -0.15 -1.45 16 24 C 0.06 0.41 6.84 37.21 0.25 0.66 16 25 O -0.38 -3.14 10.77 -35.23 -0.38 -3.52 16 26 C 0.06 0.42 6.84 37.20 0.25 0.67 16 27 C -0.16 -1.17 5.79 -26.59 -0.15 -1.32 16 28 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.39 6.83 8.34 -40.82 -0.34 6.48 16 32 H 0.41 5.27 8.36 -40.82 -0.34 4.93 16 33 H 0.17 2.91 5.79 -52.49 -0.30 2.61 16 34 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.14 1.25 5.87 -52.49 -0.31 0.95 16 36 H 0.08 0.61 5.73 -51.93 -0.30 0.31 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.57 8.13 -51.93 -0.42 0.15 16 39 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 369.24 15.07 5.56 5.56 Total: -1.00 -31.70 369.24 -8.59 -40.29 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -5.77 Total: 8.55 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -3.21 Total: 2.97 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: 0.29 Total: -50.69 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.49 Total: -20.51 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.70 -8.59 -40.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352369843.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.781 kcal (2) G-P(sol) polarization free energy of solvation -31.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds