Wall clock time and date at job start Tue Mar 31 2020 20:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00068 * 2 1 4 4 H 1.48500 * 109.47314 * 269.99694 * 3 2 1 5 5 H 1.48500 * 109.47286 * 29.99762 * 3 2 1 6 6 H 1.48501 * 109.47419 * 149.99581 * 3 2 1 7 7 C 1.37877 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00091 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00135 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47546 * 180.02562 * 9 7 2 11 11 C 1.34775 * 120.00013 * 180.02562 * 10 9 7 12 12 O 1.21590 * 120.00400 * 359.97438 * 11 10 9 13 13 N 1.34784 * 119.99759 * 180.27519 * 11 10 9 14 14 C 1.40275 * 119.99703 * 173.81031 * 13 11 10 15 15 C 1.38680 * 120.06695 * 335.32477 * 14 13 11 16 16 C 1.38212 * 120.01420 * 179.72735 * 15 14 13 17 17 C 1.38476 * 120.13020 * 0.54503 * 16 15 14 18 18 F 1.35101 * 119.93680 * 179.74852 * 17 16 15 19 19 C 1.38431 * 120.12612 * 359.73159 * 17 16 15 20 20 C 1.38547 * 119.98813 * 359.97438 * 19 17 16 21 21 O 1.35980 * 120.06376 * 180.02562 * 20 19 17 22 22 C 1.42907 * 117.00136 * 5.67062 * 21 20 19 23 23 C 1.53181 * 109.54242 * 265.52441 * 22 21 20 24 24 C 1.53102 * 109.15415 * 183.24111 * 23 22 21 25 25 O 1.42907 * 109.48559 * 57.47518 * 24 23 22 26 26 C 1.42896 * 114.09956 * 298.88697 * 25 24 23 27 27 C 1.53091 * 109.41608 * 61.16059 * 26 25 24 28 28 H 0.97003 * 120.00361 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47008 * 59.99282 * 9 7 2 30 30 H 1.09006 * 109.47185 * 300.00534 * 9 7 2 31 31 H 0.97004 * 119.99853 * 359.97438 * 10 9 7 32 32 H 0.96996 * 119.99628 * 353.81003 * 13 11 10 33 33 H 1.08001 * 119.99625 * 359.97438 * 15 14 13 34 34 H 1.07991 * 119.93759 * 180.27567 * 16 15 14 35 35 H 1.07996 * 120.00865 * 180.02562 * 19 17 16 36 36 H 1.08995 * 109.54200 * 25.70254 * 22 21 20 37 37 H 1.08997 * 109.51998 * 303.05506 * 23 22 21 38 38 H 1.08995 * 109.52222 * 63.24733 * 23 22 21 39 39 H 1.08999 * 109.40886 * 297.49399 * 24 23 22 40 40 H 1.09002 * 109.48174 * 177.50046 * 24 23 22 41 41 H 1.09003 * 109.47981 * 301.17285 * 26 25 24 42 42 H 1.09004 * 109.49084 * 181.15218 * 26 25 24 43 43 H 1.09004 * 109.52341 * 182.48820 * 27 26 25 44 44 H 1.08997 * 109.57281 * 62.32910 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 1.7537 -4.8833 0.0015 12 8 0.5583 -5.1056 0.0006 13 7 2.6295 -5.9078 0.0082 14 6 2.1665 -7.2255 0.1389 15 6 0.9493 -7.4764 0.7543 16 6 0.4916 -8.7747 0.8774 17 6 1.2514 -9.8281 0.3974 18 9 0.8025 -11.0960 0.5244 19 6 2.4699 -9.5845 -0.2128 20 6 2.9308 -8.2846 -0.3444 21 8 4.1273 -8.0435 -0.9439 22 6 4.7987 -9.1629 -1.5257 23 6 5.7981 -9.7409 -0.5189 24 6 6.5693 -10.8873 -1.1784 25 8 7.2231 -10.4073 -2.3550 26 6 6.3332 -9.8997 -3.3510 27 6 5.5541 -8.7121 -2.7798 28 1 -0.4851 0.8400 -0.0004 29 1 0.6246 -2.5570 -0.8896 30 1 0.6239 -2.5567 0.8903 31 1 3.1567 -3.4354 0.0021 32 1 3.5799 -5.7338 -0.0773 33 1 0.3571 -6.6569 1.1338 34 1 -0.4585 -8.9683 1.3529 35 1 3.0607 -10.4075 -0.5869 36 1 4.0688 -9.9265 -1.7944 37 1 6.4968 -8.9628 -0.2117 38 1 5.2617 -10.1150 0.3530 39 1 5.8750 -11.6833 -1.4474 40 1 7.3129 -11.2736 -0.4812 41 1 5.6358 -10.6828 -3.6486 42 1 6.9065 -9.5745 -4.2193 43 1 4.8432 -8.3513 -3.5231 44 1 6.2469 -7.9119 -2.5198 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352369843.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:02 Heat of formation + Delta-G solvation = -152.653985 kcal Electronic energy + Delta-G solvation = -28962.190456 eV Core-core repulsion = 24600.626703 eV Total energy + Delta-G solvation = -4361.563753 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.92417 -42.05199 -41.03587 -39.78280 -38.22570 -36.27717 -35.69700 -34.36010 -33.79438 -32.18667 -31.39640 -30.35644 -28.74995 -26.18734 -25.10249 -24.63667 -23.88348 -23.33445 -21.98408 -21.31921 -20.04407 -19.68117 -18.81237 -18.12011 -17.86876 -17.23742 -16.98367 -16.83845 -16.80129 -16.66324 -16.40230 -16.10724 -15.94489 -15.77395 -15.55726 -15.10663 -14.90587 -14.53627 -14.40663 -14.11085 -14.05073 -13.89916 -13.65214 -13.36765 -12.98531 -12.89277 -12.71975 -12.64688 -12.33379 -12.21535 -12.05681 -11.57138 -11.48926 -11.47719 -11.37144 -11.09906 -10.80521 -10.69241 -9.95307 -9.75246 -8.77285 -8.28626 -6.44676 0.00490 0.15587 1.43789 1.46466 1.56143 1.63002 1.89709 2.01658 2.38955 2.59227 2.92375 3.06860 3.16939 3.32382 3.56544 3.61089 3.64309 3.86749 3.90307 3.92943 4.00162 4.23449 4.24733 4.38573 4.45721 4.58805 4.72178 4.72702 4.77964 4.84845 4.95046 5.00904 5.06014 5.06472 5.16297 5.18309 5.26460 5.38449 5.45976 5.61264 5.69055 5.82709 6.12251 6.20365 6.25034 6.65876 7.11580 7.25079 7.54837 8.83488 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011849 B = 0.002630 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.528061 B =10644.227662 C =12675.547891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.984 3.016 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.256 1.256 7 C -0.556 4.556 8 H 0.083 0.917 9 C 0.285 3.715 10 N -0.714 5.714 11 C 0.693 3.307 12 O -0.620 6.620 13 N -0.665 5.665 14 C 0.125 3.875 15 C -0.087 4.087 16 C -0.164 4.164 17 C 0.110 3.890 18 F -0.138 7.138 19 C -0.216 4.216 20 C 0.129 3.871 21 O -0.309 6.309 22 C 0.075 3.925 23 C -0.174 4.174 24 C 0.062 3.938 25 O -0.400 6.400 26 C 0.065 3.935 27 C -0.154 4.154 28 H 0.269 0.731 29 H -0.010 1.010 30 H -0.008 1.008 31 H 0.406 0.594 32 H 0.422 0.578 33 H 0.140 0.860 34 H 0.153 0.847 35 H 0.170 0.830 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.112 0.888 41 H 0.068 0.932 42 H 0.114 0.886 43 H 0.086 0.914 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.338 -24.564 -2.950 28.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.807 3.193 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.180 1.180 7 C -0.594 4.594 8 H 0.101 0.899 9 C 0.162 3.838 10 N -0.367 5.367 11 C 0.393 3.607 12 O -0.501 6.501 13 N -0.313 5.313 14 C 0.028 3.972 15 C -0.108 4.108 16 C -0.183 4.183 17 C 0.089 3.911 18 F -0.116 7.116 19 C -0.235 4.235 20 C 0.081 3.919 21 O -0.223 6.223 22 C 0.019 3.981 23 C -0.212 4.212 24 C -0.014 4.014 25 O -0.319 6.319 26 C -0.012 4.012 27 C -0.191 4.191 28 H 0.078 0.922 29 H 0.008 0.992 30 H 0.010 0.990 31 H 0.242 0.758 32 H 0.259 0.741 33 H 0.158 0.842 34 H 0.170 0.830 35 H 0.188 0.812 36 H 0.109 0.891 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.087 0.913 40 H 0.130 0.870 41 H 0.087 0.913 42 H 0.132 0.868 43 H 0.105 0.895 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 13.432 -24.391 -2.987 28.005 hybrid contribution 0.121 0.962 0.112 0.976 sum 13.554 -23.429 -2.875 27.220 Atomic orbital electron populations 1.70127 1.08182 1.28591 1.49871 1.26014 0.95761 1.03730 0.93886 0.85171 0.78496 0.77082 0.78555 1.19670 1.20974 1.17998 1.21587 0.94331 0.90452 1.52993 0.89868 1.18488 0.87962 0.82868 0.94462 1.45357 1.11291 1.03493 1.76585 1.16193 0.84946 0.81411 0.78128 1.90820 1.15909 1.84211 1.59202 1.42299 1.10364 1.02682 1.75929 1.17131 0.95724 0.82120 1.02220 1.21133 0.95013 0.97566 0.97067 1.21092 1.02144 0.90655 1.04423 1.17314 0.93857 0.78844 1.01067 1.91492 1.89132 1.36883 1.94111 1.21044 0.98184 0.96518 1.07772 1.18146 0.86930 0.91350 0.95470 1.86123 1.29556 1.37289 1.69373 1.22802 0.93813 0.87711 0.93749 1.22714 0.98988 1.00198 0.99252 1.22702 0.97542 0.94299 0.86861 1.87946 1.34805 1.81121 1.28072 1.22698 0.93252 0.94087 0.91123 1.22360 1.00124 1.00565 0.96085 0.92210 0.99195 0.98963 0.75827 0.74055 0.84243 0.82972 0.81248 0.89067 0.90639 0.89398 0.91343 0.87032 0.91337 0.86829 0.89541 0.90548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.40 13.29 21.45 0.28 -55.11 16 2 C 0.01 0.33 5.46 84.66 0.46 0.79 16 3 Si 0.98 41.88 29.54 68.60 2.03 43.90 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 5 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 7 C -0.56 -29.80 9.28 25.60 0.24 -29.57 16 8 H 0.08 4.03 7.60 -2.91 -0.02 4.01 16 9 C 0.29 15.42 5.43 85.63 0.46 15.89 16 10 N -0.71 -30.16 5.55 -482.29 -2.68 -32.84 16 11 C 0.69 28.45 8.37 179.05 1.50 29.95 16 12 O -0.62 -30.36 13.52 -4.00 -0.05 -30.41 16 13 N -0.66 -20.73 5.30 -316.74 -1.68 -22.41 16 14 C 0.12 3.69 6.45 38.14 0.25 3.94 16 15 C -0.09 -2.71 8.72 22.37 0.19 -2.52 16 16 C -0.16 -4.16 10.02 22.32 0.22 -3.94 16 17 C 0.11 2.48 7.30 22.37 0.16 2.64 16 18 F -0.14 -3.00 17.26 44.97 0.78 -2.22 16 19 C -0.22 -4.29 8.93 22.39 0.20 -4.09 16 20 C 0.13 3.03 6.69 22.59 0.15 3.18 16 21 O -0.31 -6.35 9.20 -93.32 -0.86 -7.21 16 22 C 0.07 1.07 2.18 30.72 0.07 1.14 16 23 C -0.17 -2.09 5.75 30.69 0.18 -1.91 16 24 C 0.06 0.62 6.84 72.02 0.49 1.11 16 25 O -0.40 -5.67 10.77 -148.98 -1.60 -7.27 16 26 C 0.06 0.68 6.84 72.01 0.49 1.17 16 27 C -0.15 -2.00 5.79 30.69 0.18 -1.82 16 28 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 29 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 30 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 31 H 0.41 14.18 8.34 -92.71 -0.77 13.40 16 32 H 0.42 10.64 8.36 -92.71 -0.77 9.86 16 33 H 0.14 5.20 5.79 -2.91 -0.02 5.18 16 34 H 0.15 3.32 8.06 -2.92 -0.02 3.30 16 35 H 0.17 2.33 5.87 -2.91 -0.02 2.31 16 36 H 0.09 1.09 5.73 -2.39 -0.01 1.07 16 37 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.09 0.96 8.13 -2.39 -0.02 0.94 16 39 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 43 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 44 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -70.68 369.24 0.98 -69.70 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: -0.49 Total: 27.92 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: 5.25 Total: 15.95 kcal Atomic # 7 Polarization: -106.29 SS G_CDS: -4.07 Total: -110.36 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -2.52 Total: -44.89 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.78 Total: -2.22 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.90 kcal Total: -70.68 0.98 -69.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352369843.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.953 kcal (2) G-P(sol) polarization free energy of solvation -70.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds