Wall clock time and date at job start Tue Mar 31 2020 22:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46500 * 109.47495 * 2 1 4 4 C 1.34770 * 119.99977 * 295.02873 * 3 2 1 5 5 O 1.21548 * 120.00415 * 359.97438 * 4 3 2 6 6 C 1.47895 * 120.00246 * 179.97438 * 4 3 2 7 7 C 1.39921 * 120.02179 * 359.72973 * 6 4 3 8 8 C 1.38325 * 120.35500 * 179.71823 * 7 6 4 9 9 C 1.37756 * 120.41492 * 0.55319 * 8 7 6 10 10 C 1.40750 * 120.03301 * 359.72572 * 9 8 7 11 11 C 1.41444 * 120.17411 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99779 * 26.08255 * 11 10 9 13 13 C 1.39938 * 119.99981 * 206.09054 * 11 10 9 14 14 N 1.30835 * 119.99819 * 13.19370 * 13 11 10 15 15 Si 1.86798 * 120.00000 * 193.19826 * 13 11 10 16 16 H 1.48497 * 109.47300 * 59.99465 * 15 13 11 17 17 H 1.48499 * 109.47053 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46899 * 299.99619 * 15 13 11 19 19 C 1.38987 * 120.02556 * 179.97438 * 6 4 3 20 20 C 1.50695 * 109.47271 * 239.99860 * 2 1 3 21 21 N 1.34778 * 119.99972 * 155.00130 * 20 2 1 22 22 O 1.21280 * 119.99969 * 335.00014 * 20 2 1 23 23 C 1.50701 * 109.47122 * 119.99718 * 2 1 3 24 24 C 1.38247 * 119.99816 * 85.41681 * 23 2 1 25 25 C 1.38228 * 120.00019 * 179.81272 * 24 23 2 26 26 C 1.38236 * 120.00061 * 0.39758 * 25 24 23 27 27 C 1.38237 * 120.00116 * 359.85144 * 26 25 24 28 28 C 1.38231 * 120.00775 * 265.69269 * 23 2 1 29 29 H 1.08998 * 109.47316 * 179.97438 * 1 2 3 30 30 H 1.09011 * 109.47062 * 300.00117 * 1 2 3 31 31 H 1.09004 * 109.47084 * 59.99519 * 1 2 3 32 32 H 0.97004 * 120.00077 * 115.02775 * 3 2 1 33 33 H 1.08002 * 119.82250 * 359.97173 * 7 6 4 34 34 H 1.08000 * 119.79165 * 180.25683 * 8 7 6 35 35 H 1.07989 * 119.98293 * 179.74484 * 9 8 7 36 36 H 0.96999 * 119.99261 * 180.02562 * 14 13 11 37 37 H 1.08001 * 120.20486 * 359.97438 * 19 6 4 38 38 H 0.96995 * 120.00235 * 0.02562 * 21 20 2 39 39 H 0.97006 * 119.99482 * 179.72363 * 21 20 2 40 40 H 1.07998 * 119.99260 * 359.97438 * 24 23 2 41 41 H 1.08000 * 120.00228 * 180.22993 * 25 24 23 42 42 H 1.07997 * 120.00215 * 179.84013 * 26 25 24 43 43 H 1.07995 * 120.00364 * 179.97438 * 27 26 25 44 44 H 1.08004 * 119.99566 * 359.97438 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.7775 2.1811 -1.0575 5 8 1.1554 1.7565 -2.0116 6 6 2.2700 3.5756 -1.0574 7 6 2.9813 4.0667 0.0430 8 6 3.4502 5.3680 0.0480 9 6 3.2128 6.1990 -1.0248 10 6 2.4941 5.7244 -2.1380 11 6 2.2491 6.5749 -3.2413 12 1 2.9185 7.3966 -3.4487 13 6 1.1393 6.3516 -4.0640 14 7 0.1934 5.5340 -3.6787 15 14 1.0086 7.2208 -5.7123 16 1 2.1668 6.8461 -6.5627 17 1 -0.2513 6.8165 -6.3864 18 1 1.0065 8.6903 -5.4981 19 6 2.0224 4.4008 -2.1480 20 6 2.0323 -0.7104 -1.2304 21 7 3.2543 -0.4246 -1.7218 22 8 1.3370 -1.5394 -1.7784 23 6 2.0323 -0.7104 1.2305 24 6 2.1725 -2.0857 1.2258 25 6 2.6369 -2.7369 2.3532 26 6 2.9534 -2.0138 3.4880 27 6 2.8083 -0.6391 3.4945 28 6 2.3475 0.0125 2.3658 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 2.5151 1.7200 0.7612 33 1 3.1688 3.4250 0.8912 34 1 4.0017 5.7364 0.9003 35 1 3.5785 7.2150 -1.0117 36 1 -0.5757 5.3790 -4.2491 37 1 1.4707 4.0271 -2.9979 38 1 3.8106 0.2381 -1.2834 39 1 3.5792 -0.8848 -2.5115 40 1 1.9216 -2.6509 0.3404 41 1 2.7500 -3.8110 2.3483 42 1 3.3138 -2.5228 4.3697 43 1 3.0552 -0.0741 4.3811 44 1 2.2341 1.0866 2.3708 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355379667.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:01 Heat of formation + Delta-G solvation = -25.787398 kcal Electronic energy + Delta-G solvation = -29033.847075 eV Core-core repulsion = 25108.553895 eV Total energy + Delta-G solvation = -3925.293180 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.00018 -38.98474 -38.51050 -37.08201 -35.19262 -33.80339 -33.35090 -31.92014 -31.06779 -30.14048 -29.52474 -28.98463 -25.44037 -24.83073 -23.42380 -22.46767 -21.99711 -21.03515 -20.01972 -19.30298 -18.21339 -17.45984 -17.23134 -16.71367 -16.09094 -15.56172 -15.23357 -14.93660 -14.76658 -14.47681 -14.28656 -14.24877 -13.91577 -13.73334 -13.46902 -13.24512 -12.87838 -12.82635 -12.59519 -12.34231 -12.06798 -11.88747 -11.70076 -11.35120 -11.26512 -11.18498 -11.13340 -10.82423 -10.54999 -10.08543 -10.03607 -9.78364 -9.49130 -9.29597 -9.21058 -9.15623 -9.07018 -8.73707 -7.72477 -7.57489 -6.81490 -4.48871 1.05198 1.16436 2.08790 2.70745 2.76434 3.05049 3.06788 3.11176 3.34192 3.47014 3.67771 3.77868 3.88516 4.40624 4.58126 4.67252 4.77827 4.91345 4.97594 5.17327 5.24645 5.35145 5.52884 5.56515 5.67557 5.78114 5.86750 5.91406 5.99135 6.17374 6.20834 6.24694 6.28054 6.42897 6.61491 6.63623 6.72771 6.89113 6.92987 6.93864 7.15773 7.30273 7.44753 7.60330 7.65118 7.83178 7.95327 8.11307 8.38932 8.43779 8.73223 8.76129 8.79350 10.11634 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.017764 B = 0.003167 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.873572 B = 8838.154096 C = 9853.279089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.204 3.796 3 N -0.734 5.734 4 C 0.563 3.437 5 O -0.526 6.526 6 C -0.130 4.130 7 C -0.218 4.218 8 C -0.097 4.097 9 C -0.209 4.209 10 C 0.098 3.902 11 C -0.458 4.458 12 H 0.080 0.920 13 C 0.071 3.929 14 N -0.786 5.786 15 Si 0.913 3.087 16 H -0.263 1.263 17 H -0.277 1.277 18 H -0.265 1.265 19 C -0.086 4.086 20 C 0.540 3.460 21 N -0.843 5.843 22 O -0.541 6.541 23 C -0.083 4.083 24 C -0.106 4.106 25 C -0.115 4.115 26 C -0.118 4.118 27 C -0.114 4.114 28 C -0.110 4.110 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.403 0.597 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.285 0.715 37 H 0.138 0.862 38 H 0.401 0.599 39 H 0.400 0.600 40 H 0.129 0.871 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.126 0.874 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.717 -11.351 11.759 17.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.114 3.886 3 N -0.394 5.394 4 C 0.354 3.646 5 O -0.402 6.402 6 C -0.133 4.133 7 C -0.239 4.239 8 C -0.116 4.116 9 C -0.229 4.229 10 C 0.095 3.905 11 C -0.487 4.487 12 H 0.099 0.901 13 C -0.148 4.148 14 N -0.411 5.411 15 Si 0.737 3.263 16 H -0.188 1.188 17 H -0.202 1.202 18 H -0.190 1.190 19 C -0.107 4.107 20 C 0.323 3.677 21 N -0.406 5.406 22 O -0.417 6.417 23 C -0.083 4.083 24 C -0.125 4.125 25 C -0.133 4.133 26 C -0.136 4.136 27 C -0.132 4.132 28 C -0.128 4.128 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.242 0.758 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.097 0.903 37 H 0.155 0.845 38 H 0.230 0.770 39 H 0.231 0.769 40 H 0.147 0.853 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.144 0.856 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.420 -12.242 10.743 16.877 hybrid contribution 0.503 0.815 -0.333 1.014 sum 4.922 -11.427 10.411 16.223 Atomic orbital electron populations 1.22034 0.90808 1.03477 1.03961 1.19199 0.96374 0.82175 0.90839 1.46369 1.59890 1.10616 1.22485 1.18966 0.78375 0.86131 0.81114 1.90755 1.39612 1.75399 1.34433 1.19404 1.04337 0.91572 0.97994 1.20317 1.08480 0.96864 0.98191 1.20428 0.99805 0.93869 0.97458 1.21133 1.08589 0.98459 0.94755 1.17613 0.89840 0.91370 0.91649 1.19578 1.08330 1.12235 1.08566 0.90139 1.25970 0.94734 0.94585 0.99496 1.69747 1.06553 1.28492 1.36278 0.86280 0.78597 0.80175 0.81215 1.18764 1.20186 1.18954 1.21729 0.99418 0.92331 0.97182 1.20266 0.81100 0.81572 0.84770 1.43677 1.18508 1.45255 1.33122 1.90703 1.56052 1.34794 1.60123 1.19547 1.00537 0.94102 0.94159 1.21125 0.98615 0.93498 0.99227 1.21128 0.99120 1.00023 0.93000 1.21213 0.99886 0.94323 0.98223 1.21134 0.99340 0.94656 0.98071 1.20962 0.99147 1.00137 0.92557 0.90842 0.91631 0.89689 0.75848 0.89375 0.88854 0.88579 0.90337 0.84460 0.77030 0.76919 0.85348 0.85765 0.85911 0.85575 0.85496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 7.99 37.15 0.30 -2.00 16 2 C 0.20 3.04 0.83 -134.13 -0.11 2.93 16 3 N -0.73 -11.25 4.21 -50.69 -0.21 -11.46 16 4 C 0.56 11.35 6.79 -12.31 -0.08 11.27 16 5 O -0.53 -12.43 13.64 5.32 0.07 -12.36 16 6 C -0.13 -2.86 5.87 -105.04 -0.62 -3.47 16 7 C -0.22 -4.22 9.55 -38.92 -0.37 -4.59 16 8 C -0.10 -1.94 10.01 -39.73 -0.40 -2.34 16 9 C -0.21 -4.74 9.78 -38.81 -0.38 -5.12 16 10 C 0.10 2.49 5.57 -106.87 -0.60 1.89 16 11 C -0.46 -11.70 9.07 -37.73 -0.34 -12.04 16 12 H 0.08 1.95 7.88 -52.49 -0.41 1.53 16 13 C 0.07 1.76 5.22 -17.34 -0.09 1.67 16 14 N -0.79 -20.47 10.80 55.55 0.60 -19.87 16 15 Si 0.91 18.55 29.58 -169.99 -5.03 13.52 16 16 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 17 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 18 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 19 C -0.09 -2.20 8.22 -38.45 -0.32 -2.52 16 20 C 0.54 8.95 4.13 -10.99 -0.05 8.91 16 21 N -0.84 -11.74 8.47 31.22 0.26 -11.48 16 22 O -0.54 -10.53 16.34 5.56 0.09 -10.44 16 23 C -0.08 -1.01 4.80 -104.62 -0.50 -1.51 16 24 C -0.11 -1.23 9.15 -39.58 -0.36 -1.59 16 25 C -0.11 -1.07 10.05 -39.59 -0.40 -1.47 16 26 C -0.12 -1.00 10.05 -39.58 -0.40 -1.39 16 27 C -0.11 -1.00 10.05 -39.58 -0.40 -1.40 16 28 C -0.11 -1.14 9.05 -39.59 -0.36 -1.50 16 29 H 0.07 1.11 7.87 -51.93 -0.41 0.70 16 30 H 0.06 0.93 8.14 -51.92 -0.42 0.50 16 31 H 0.08 1.63 6.54 -51.93 -0.34 1.29 16 32 H 0.40 5.22 4.31 -40.82 -0.18 5.04 16 33 H 0.09 1.36 6.38 -52.49 -0.33 1.03 16 34 H 0.09 1.57 8.06 -52.49 -0.42 1.14 16 35 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 36 H 0.29 6.91 8.30 -40.82 -0.34 6.57 16 37 H 0.14 3.84 5.68 -52.49 -0.30 3.54 16 38 H 0.40 5.07 8.07 -40.82 -0.33 4.74 16 39 H 0.40 4.97 8.93 -40.82 -0.36 4.61 16 40 H 0.13 1.62 6.76 -52.49 -0.35 1.26 16 41 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 42 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 44 H 0.13 1.21 6.36 -52.48 -0.33 0.87 16 LS Contribution 366.03 15.07 5.52 5.52 Total: -1.00 -30.93 366.03 -9.19 -40.12 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: -5.02 Total: 20.73 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -5.47 Total: -14.28 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: 0.65 Total: -42.81 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: 0.16 Total: -22.79 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.52 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.93 -9.19 -40.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355379667.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.332 kcal (2) G-P(sol) polarization free energy of solvation -30.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds