Wall clock time and date at job start Tue Mar 31 2020 22:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46500 * 109.47495 * 2 1 4 4 C 1.34770 * 119.99977 * 295.02873 * 3 2 1 5 5 O 1.21548 * 120.00415 * 359.97438 * 4 3 2 6 6 C 1.47895 * 120.00246 * 179.97438 * 4 3 2 7 7 C 1.39921 * 120.02179 * 359.72973 * 6 4 3 8 8 C 1.38325 * 120.35500 * 179.71823 * 7 6 4 9 9 C 1.37756 * 120.41492 * 0.55319 * 8 7 6 10 10 C 1.40750 * 120.03301 * 359.72572 * 9 8 7 11 11 C 1.41444 * 120.17411 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99779 * 26.08255 * 11 10 9 13 13 C 1.39938 * 119.99981 * 206.09054 * 11 10 9 14 14 N 1.30835 * 119.99819 * 13.19370 * 13 11 10 15 15 Si 1.86798 * 120.00000 * 193.19826 * 13 11 10 16 16 H 1.48497 * 109.47300 * 59.99465 * 15 13 11 17 17 H 1.48499 * 109.47053 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46899 * 299.99619 * 15 13 11 19 19 C 1.38987 * 120.02556 * 179.97438 * 6 4 3 20 20 C 1.50695 * 109.47271 * 239.99860 * 2 1 3 21 21 N 1.34778 * 119.99972 * 155.00130 * 20 2 1 22 22 O 1.21280 * 119.99969 * 335.00014 * 20 2 1 23 23 C 1.50701 * 109.47122 * 119.99718 * 2 1 3 24 24 C 1.38247 * 119.99816 * 85.41681 * 23 2 1 25 25 C 1.38228 * 120.00019 * 179.81272 * 24 23 2 26 26 C 1.38236 * 120.00061 * 0.39758 * 25 24 23 27 27 C 1.38237 * 120.00116 * 359.85144 * 26 25 24 28 28 C 1.38231 * 120.00775 * 265.69269 * 23 2 1 29 29 H 1.08998 * 109.47316 * 179.97438 * 1 2 3 30 30 H 1.09011 * 109.47062 * 300.00117 * 1 2 3 31 31 H 1.09004 * 109.47084 * 59.99519 * 1 2 3 32 32 H 0.97004 * 120.00077 * 115.02775 * 3 2 1 33 33 H 1.08002 * 119.82250 * 359.97173 * 7 6 4 34 34 H 1.08000 * 119.79165 * 180.25683 * 8 7 6 35 35 H 1.07989 * 119.98293 * 179.74484 * 9 8 7 36 36 H 0.96999 * 119.99261 * 180.02562 * 14 13 11 37 37 H 1.08001 * 120.20486 * 359.97438 * 19 6 4 38 38 H 0.96995 * 120.00235 * 0.02562 * 21 20 2 39 39 H 0.97006 * 119.99482 * 179.72363 * 21 20 2 40 40 H 1.07998 * 119.99260 * 359.97438 * 24 23 2 41 41 H 1.08000 * 120.00228 * 180.22993 * 25 24 23 42 42 H 1.07997 * 120.00215 * 179.84013 * 26 25 24 43 43 H 1.07995 * 120.00364 * 179.97438 * 27 26 25 44 44 H 1.08004 * 119.99566 * 359.97438 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.7775 2.1811 -1.0575 5 8 1.1554 1.7565 -2.0116 6 6 2.2700 3.5756 -1.0574 7 6 2.9813 4.0667 0.0430 8 6 3.4502 5.3680 0.0480 9 6 3.2128 6.1990 -1.0248 10 6 2.4941 5.7244 -2.1380 11 6 2.2491 6.5749 -3.2413 12 1 2.9185 7.3966 -3.4487 13 6 1.1393 6.3516 -4.0640 14 7 0.1934 5.5340 -3.6787 15 14 1.0086 7.2208 -5.7123 16 1 2.1668 6.8461 -6.5627 17 1 -0.2513 6.8165 -6.3864 18 1 1.0065 8.6903 -5.4981 19 6 2.0224 4.4008 -2.1480 20 6 2.0323 -0.7104 -1.2304 21 7 3.2543 -0.4246 -1.7218 22 8 1.3370 -1.5394 -1.7784 23 6 2.0323 -0.7104 1.2305 24 6 2.1725 -2.0857 1.2258 25 6 2.6369 -2.7369 2.3532 26 6 2.9534 -2.0138 3.4880 27 6 2.8083 -0.6391 3.4945 28 6 2.3475 0.0125 2.3658 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 2.5151 1.7200 0.7612 33 1 3.1688 3.4250 0.8912 34 1 4.0017 5.7364 0.9003 35 1 3.5785 7.2150 -1.0117 36 1 -0.5757 5.3790 -4.2491 37 1 1.4707 4.0271 -2.9979 38 1 3.8106 0.2381 -1.2834 39 1 3.5792 -0.8848 -2.5115 40 1 1.9216 -2.6509 0.3404 41 1 2.7500 -3.8110 2.3483 42 1 3.3138 -2.5228 4.3697 43 1 3.0552 -0.0741 4.3811 44 1 2.2341 1.0866 2.3708 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355379667.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:00 Heat of formation + Delta-G solvation = -46.262995 kcal Electronic energy + Delta-G solvation = -29034.734964 eV Core-core repulsion = 25108.553895 eV Total energy + Delta-G solvation = -3926.181069 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.25750 -40.33146 -39.66245 -38.77553 -36.55076 -35.58768 -34.60935 -33.26637 -31.91913 -31.52436 -31.23696 -30.21072 -27.23124 -26.10731 -24.67652 -23.57882 -22.98208 -22.77694 -21.39416 -20.67413 -19.72786 -18.80769 -18.53752 -17.98050 -17.43990 -16.91281 -16.61785 -16.42443 -15.89138 -15.85350 -15.73863 -15.38657 -15.20302 -15.06785 -14.95371 -14.48852 -14.31115 -14.19677 -13.84006 -13.55247 -13.44295 -13.22262 -13.13424 -12.89278 -12.80249 -12.53699 -12.27001 -12.20762 -12.01187 -11.87298 -11.52167 -11.35447 -11.09531 -10.80866 -10.74561 -10.38174 -9.88623 -9.74634 -9.47290 -9.35068 -8.62614 -6.39105 0.27094 0.36382 0.43570 1.02981 1.35768 1.40617 1.47359 1.48847 1.95376 2.08272 2.18815 2.44093 2.79189 2.82118 3.36977 3.68108 3.73531 3.89475 3.99812 4.03283 4.11775 4.28143 4.44306 4.52327 4.54940 4.59258 4.63084 4.67992 4.91324 4.94348 5.05716 5.08282 5.10249 5.18058 5.20750 5.33471 5.51195 5.52620 5.53723 5.58579 5.75019 5.86407 5.92735 6.02502 6.08003 6.24046 6.30462 6.44774 6.64699 6.89341 6.95870 7.14808 7.22359 8.31688 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.017764 B = 0.003167 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.873572 B = 8838.154096 C = 9853.279089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.209 3.791 3 N -0.707 5.707 4 C 0.566 3.434 5 O -0.567 6.567 6 C -0.137 4.137 7 C -0.191 4.191 8 C -0.095 4.095 9 C -0.212 4.212 10 C 0.065 3.935 11 C -0.496 4.496 12 H 0.083 0.917 13 C 0.027 3.973 14 N -0.829 5.829 15 Si 0.981 3.019 16 H -0.261 1.261 17 H -0.275 1.275 18 H -0.253 1.253 19 C -0.124 4.124 20 C 0.532 3.468 21 N -0.833 5.833 22 O -0.579 6.579 23 C -0.097 4.097 24 C -0.122 4.122 25 C -0.116 4.116 26 C -0.111 4.111 27 C -0.109 4.109 28 C -0.114 4.114 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.044 0.956 32 H 0.418 0.582 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.107 0.893 36 H 0.284 0.716 37 H 0.100 0.900 38 H 0.409 0.591 39 H 0.407 0.593 40 H 0.108 0.892 41 H 0.143 0.857 42 H 0.154 0.846 43 H 0.156 0.844 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.981 -11.578 15.772 21.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.119 3.881 3 N -0.365 5.365 4 C 0.357 3.643 5 O -0.446 6.446 6 C -0.141 4.141 7 C -0.210 4.210 8 C -0.113 4.113 9 C -0.232 4.232 10 C 0.063 3.937 11 C -0.526 4.526 12 H 0.101 0.899 13 C -0.187 4.187 14 N -0.456 5.456 15 Si 0.802 3.198 16 H -0.185 1.185 17 H -0.200 1.200 18 H -0.177 1.177 19 C -0.145 4.145 20 C 0.316 3.684 21 N -0.395 5.395 22 O -0.458 6.458 23 C -0.098 4.098 24 C -0.141 4.141 25 C -0.134 4.134 26 C -0.129 4.129 27 C -0.127 4.127 28 C -0.132 4.132 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.064 0.936 32 H 0.260 0.740 33 H 0.158 0.842 34 H 0.159 0.841 35 H 0.125 0.875 36 H 0.094 0.906 37 H 0.118 0.882 38 H 0.239 0.761 39 H 0.238 0.762 40 H 0.126 0.874 41 H 0.161 0.839 42 H 0.172 0.828 43 H 0.174 0.826 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.746 -12.457 14.813 20.497 hybrid contribution -0.072 0.745 -1.316 1.514 sum 6.674 -11.712 13.497 19.076 Atomic orbital electron populations 1.21983 0.91979 1.03312 1.02802 1.19142 0.95602 0.81486 0.91833 1.46026 1.58734 1.10412 1.21377 1.18787 0.77938 0.86009 0.81609 1.90754 1.41438 1.76046 1.36405 1.19657 1.04288 0.92171 0.97946 1.20881 1.04870 0.97287 0.97985 1.20931 0.99100 0.93516 0.97770 1.21446 1.07430 0.99590 0.94730 1.17937 0.91190 0.91553 0.93020 1.19844 1.09302 1.13223 1.10252 0.89911 1.26806 0.94043 0.95088 1.02717 1.69872 1.07312 1.30762 1.37611 0.85264 0.78403 0.79465 0.76710 1.18493 1.20027 1.17658 1.21496 1.01676 0.93424 0.97877 1.20646 0.81371 0.81270 0.85144 1.43605 1.17862 1.44937 1.33091 1.90675 1.57180 1.36627 1.61319 1.19305 1.02763 0.94230 0.93471 1.21065 0.99980 0.93364 0.99650 1.21380 0.98297 1.01172 0.92512 1.21618 0.98225 0.94431 0.98597 1.21499 0.97856 0.95039 0.98261 1.21111 0.99152 1.00656 0.92318 0.90606 0.89762 0.93638 0.73999 0.84184 0.84133 0.87464 0.90582 0.88238 0.76095 0.76199 0.87411 0.83908 0.82849 0.82614 0.84436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.63 7.99 71.98 0.57 -4.06 16 2 C 0.21 6.14 0.83 2.11 0.00 6.14 16 3 N -0.71 -20.56 4.21 -432.58 -1.82 -22.38 16 4 C 0.57 22.98 6.79 86.80 0.59 23.57 16 5 O -0.57 -28.25 13.64 -3.87 -0.05 -28.30 16 6 C -0.14 -6.01 5.87 -20.13 -0.12 -6.12 16 7 C -0.19 -6.66 9.55 22.70 0.22 -6.44 16 8 C -0.10 -3.43 10.01 22.18 0.22 -3.20 16 9 C -0.21 -9.36 9.78 22.77 0.22 -9.14 16 10 C 0.07 3.42 5.57 -21.32 -0.12 3.30 16 11 C -0.50 -26.54 9.07 23.47 0.21 -26.33 16 12 H 0.08 4.16 7.88 -2.91 -0.02 4.14 16 13 C 0.03 1.43 5.22 85.25 0.45 1.88 16 14 N -0.83 -46.26 10.80 21.83 0.24 -46.03 16 15 Si 0.98 39.75 29.58 68.60 2.03 41.78 16 16 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 17 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 18 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 19 C -0.12 -6.62 8.22 23.01 0.19 -6.43 16 20 C 0.53 18.07 4.13 87.66 0.36 18.43 16 21 N -0.83 -23.38 8.47 -173.54 -1.47 -24.85 16 22 O -0.58 -23.68 16.34 -3.03 -0.05 -23.73 16 23 C -0.10 -2.17 4.80 -19.86 -0.10 -2.27 16 24 C -0.12 -2.67 9.15 22.27 0.20 -2.46 16 25 C -0.12 -1.82 10.05 22.27 0.22 -1.59 16 26 C -0.11 -1.34 10.05 22.27 0.22 -1.12 16 27 C -0.11 -1.36 10.05 22.27 0.22 -1.13 16 28 C -0.11 -1.92 9.05 22.27 0.20 -1.72 16 29 H 0.08 2.38 7.87 -2.39 -0.02 2.36 16 30 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 31 H 0.04 1.84 6.54 -2.38 -0.02 1.82 16 32 H 0.42 9.26 4.31 -92.71 -0.40 8.86 16 33 H 0.14 3.42 6.38 -2.91 -0.02 3.40 16 34 H 0.14 3.81 8.06 -2.91 -0.02 3.78 16 35 H 0.11 4.39 8.06 -2.92 -0.02 4.37 16 36 H 0.28 14.82 8.30 -92.71 -0.77 14.05 16 37 H 0.10 6.04 5.68 -2.91 -0.02 6.02 16 38 H 0.41 10.00 8.07 -92.71 -0.75 9.25 16 39 H 0.41 10.34 8.93 -92.70 -0.83 9.51 16 40 H 0.11 2.78 6.76 -2.91 -0.02 2.76 16 41 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 42 H 0.15 0.95 8.06 -2.91 -0.02 0.92 16 43 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 44 H 0.14 1.94 6.36 -2.91 -0.02 1.92 16 Total: -1.00 -74.57 366.03 1.76 -72.81 By element: Atomic # 1 Polarization: 50.29 SS G_CDS: -0.89 Total: 49.40 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: 3.78 Total: -18.70 kcal Atomic # 7 Polarization: -90.20 SS G_CDS: -3.05 Total: -93.26 kcal Atomic # 8 Polarization: -51.93 SS G_CDS: -0.10 Total: -52.03 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 2.03 Total: 41.78 kcal Total: -74.57 1.76 -72.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355379667.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.544 kcal (2) G-P(sol) polarization free energy of solvation -74.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds